View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10467_low_2 (Length: 337)
Name: NF10467_low_2
Description: NF10467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10467_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 321
Target Start/End: Complemental strand, 32727355 - 32727025
Alignment:
| Q |
1 |
caagtctaaacaaaagcattgaatttggaatgtgacacatagagtgaagaccacaca-tcatttttataagaatacaactctatacatgcatattgttca |
99 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |||||||||||||||||| ||||||||||||||||||||||| |
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| T |
32727355 |
caagtctaaacaaaagcattgaatttcgaatgtgacacatagagtgaaggccacacagtcatttttataagaatactactctatacatgcatattgttca |
32727256 |
T |
|
| Q |
100 |
tgttggtaggcttaagattcgagattaagggatatgcattgtctatcaaaagttattttacactaacatttaatcgcaactcttcaattcgctacatcat |
199 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||||||| |||||||||| |
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| T |
32727255 |
tgttggtaggtttaagattcgagattaagggatatgcattgtcactcaaaagttattttacactaacattcaattgcaactcttcaatttgctacatcat |
32727156 |
T |
|
| Q |
200 |
attctacgatttctaactaagcagttatgtaattgact----------attctgattacactatacatataagttattcatttaaggtttatcataagca |
289 |
Q |
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||| |||||||| |||||||||||| |||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||| |
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| T |
32727155 |
attttacgatttttaactaagcagtcatgtaattgactgttattggcagttctgattacactatacttataatttattcatttaaggtttatcataagca |
32727056 |
T |
|
| Q |
290 |
aacatgaaatagttttatatggataataacct |
321 |
Q |
| |
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|||||||||||| ||||||||||||||||||| |
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| T |
32727055 |
aacatgaaatag-tttatatggataataacct |
32727025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 321
Target Start/End: Complemental strand, 44188228 - 44187897
Alignment:
| Q |
1 |
caagtctaaacaaaagcattgaatttggaatgtgacacatagagtgaagaccacaca-tcatttttataagaatacaactctatacatgcatattgttca |
99 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |||||||||||||||||| ||||||||||| ||||||||||| |
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| T |
44188228 |
caagtctaaacaaaagcattgaatttcgaatgtgacacatagagtgaaggccacacagtcatttttataagaatactactctatacatccatattgttca |
44188129 |
T |
|
| Q |
100 |
tgttggtaggcttaagattcgagattaagggatatgcattgtctatcaaaagttattttacactaacatttaatcgcaactcttcaattcgctacatcat |
199 |
Q |
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| T |
44188128 |
tgttggtaggtttaagattcgagattaagggatatgcattgtcactcaaaagttattttacactaacattcaattgcaactcttcaattcgctacatcat |
44188029 |
T |
|
| Q |
200 |
attctacgatttctaactaagcagttatgtaattgact-----------attctgattacactatacatataagttattcatttaaggtttatcataagc |
288 |
Q |
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||| |||||||| |||||||||||| |||||||||||| ||||||||||||| ||| ||||| |||||||||||||||||||||||||| |
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| T |
44188028 |
attttacgatttttaactaagcagtcatgtaattgactgtttattggcagttctgattacactgtacttataatttattcatttaaggtttatcataagc |
44187929 |
T |
|
| Q |
289 |
aaacatgaaatagttttatatggataataacct |
321 |
Q |
| |
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||||||||||||| ||||||||||||||||||| |
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| T |
44187928 |
aaacatgaaatag-tttatatggataataacct |
44187897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 6094389 - 6094201
Alignment:
| Q |
1 |
caagtctaaacaaaagcattgaatttggaatgtgacacatagagtgaagaccacacatcatttttataagaatacaactctatacatgcatattgttcat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6094389 |
caagtctaaacaaaagcattgaatttggaatgtgacacatagagtgaaggccacacatcatttttataagaatacaactctatacatgcatattgttcat |
6094290 |
T |
|
| Q |
101 |
gttggtaggcttaagattcgagattaagggatatgcattgtctatcaaaagttattttacactaacatttaatcgcaactcttcaattc |
189 |
Q |
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| T |
6094289 |
gttggtaggcttaagattcgagattaagggatatgcattgtctatcaaaagttattttacactaacattcaatcgcaactcttcaattc |
6094201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 62; Significance: 9e-27; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 154 - 319
Target Start/End: Original strand, 43095731 - 43095904
Alignment:
| Q |
154 |
attttacactaacatttaatcgcaactcttcaattcgctacatcatattctacgatttct-aactaag--cagttatgtaattgacta-ttctgattaca |
249 |
Q |
| |
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||||||||||||||||||||| ||||||||||||| |||||||| || | |||| ||| | |||||| || |||||||| || | | || |||||||| |
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| T |
43095731 |
attttacactaacatttaatcacaactcttcaatttgctacatcgtactttacggttttttaactaaaaacaattatgtaaatggcgagttatgattaca |
43095830 |
T |
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| Q |
250 |
ct----atacatataagttattcatttaaggtttatcataagcaaacatgaaatagttttatatggataataac |
319 |
Q |
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|| |||||||||| |||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
43095831 |
cttacaatacatataatttattcctttaagatttatgataagcaaacatgaaatagttttatatggataataac |
43095904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 202
Target Start/End: Original strand, 13897925 - 13898007
Alignment:
| Q |
120 |
gagattaagggatatgcattgtctatcaaaagttattttacactaacatttaatcgcaactcttcaattcgctacatcatatt |
202 |
Q |
| |
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||||||| ||||||||||||||| || | |||||||||||| | | || |||| ||||||||||||| || |||||||||| |
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| T |
13897925 |
gagattacgggatatgcattgtcaatgtatagttattttacattgaaatccaatcacaactcttcaatttgccacatcatatt |
13898007 |
T |
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