View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10467_low_5 (Length: 250)
Name: NF10467_low_5
Description: NF10467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10467_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 42 - 230
Target Start/End: Complemental strand, 18679134 - 18678931
Alignment:
| Q |
42 |
tttgtttacttgagggacaagttatgcctcataagcttgtatgattatggattaaagggtgtttattagaatattaatccataatcatatggtagttagt |
141 |
Q |
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| T |
18679134 |
tttgtttacttgagggacaagttaggtcacataagcttgtatgattatggattaaagagggtgtattaaaatattaatccataatcatatggtagttagt |
18679035 |
T |
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| Q |
142 |
tacataatcg-ttttcggactttggtg--------------aacttgcatcacaaatcaagtgtatataactagttgtaatgctctttttcaacaatcaa |
226 |
Q |
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| T |
18679034 |
tacataaccgtttttcggactttgaggagttagttactaataacttacatcacaaatcaagtgtatacagctagttgtgatactctttttcatcaatcaa |
18678935 |
T |
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| Q |
227 |
tgaa |
230 |
Q |
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|||| |
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| T |
18678934 |
tgaa |
18678931 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 107 - 230
Target Start/End: Complemental strand, 30808145 - 30808009
Alignment:
| Q |
107 |
ttagaatattaatccataatcatatggtagttagttacataatcgttttcggactttggtga-------------acttgcatcacaaatcaagtgtata |
193 |
Q |
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| T |
30808145 |
ttagaatattaatccataatcatagggtagttagttacataaccatttctggactttgctgagtagttactgataacttgcataacaagtcaagtgtata |
30808046 |
T |
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| Q |
194 |
taactagttgtaatgctctttttcaacaatcaatgaa |
230 |
Q |
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| T |
30808045 |
taactaattgcaatgctctttttcatcaatcaatgaa |
30808009 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 168 - 230
Target Start/End: Complemental strand, 8543775 - 8543712
Alignment:
| Q |
168 |
aacttgcatcacaaatcaagtgtatataactagttgtaatgc-tctttttcaacaatcaatgaa |
230 |
Q |
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| T |
8543775 |
aacttgcatcacaagtcaagtgtatataactagttgtaatgcttttttttcatcaatcaatgaa |
8543712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 168 - 230
Target Start/End: Complemental strand, 40197536 - 40197475
Alignment:
| Q |
168 |
aacttgcatcacaaatcaagtgtatataactagttgtaatgctctttttcaacaatcaatgaa |
230 |
Q |
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| T |
40197536 |
aacttgcatcacaagtcaagtgtatataactagttgtaatgct-tctttcatcaatcaatgaa |
40197475 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 41 - 100
Target Start/End: Original strand, 18508541 - 18508600
Alignment:
| Q |
41 |
atttgtttacttgagggacaagttatgcctcataagcttgtatgattatggattaaaggg |
100 |
Q |
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| T |
18508541 |
atttgtttacttgagggacaaattaggtctcataagcttgtaggattatagattaaaggg |
18508600 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 48 - 131
Target Start/End: Complemental strand, 33704597 - 33704514
Alignment:
| Q |
48 |
tacttgagggacaagttatgcctcataagcttgtatgattatggattaaagggtgtttattagaatattaatccataatcatat |
131 |
Q |
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||||| |||||||||||| | |||||||||||||| ||||||||||||||||| | ||||| | | |||||||||||||||| |
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| T |
33704597 |
tacttaagggacaagttaggtctcataagcttgtaagattatggattaaaggggttgtattaaatgactaatccataatcatat |
33704514 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 54 - 131
Target Start/End: Complemental strand, 33716928 - 33716852
Alignment:
| Q |
54 |
agggacaagttatgcctcataagcttgtatgattatggattaaagggtgtttattagaatattaatccataatcatat |
131 |
Q |
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| T |
33716928 |
agggacaagtta-gtctcataagcttgtaagattgtggattaaaggggttgtattaaatgactaatccataatcatat |
33716852 |
T |
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