View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10467_low_6 (Length: 250)
Name: NF10467_low_6
Description: NF10467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10467_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 171; Significance: 6e-92; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 6094411 - 6094660
Alignment:
| Q |
1 |
atatgaatttccctctacttgattcatttttataggaaaactaaaatggacaattttgtgcatgagcttcaataaaggatatcaaaatctcacaaaattc |
100 |
Q |
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| T |
6094411 |
atatgaatttccctctacttgattcatctttataggaaaaccaaaatggacaattttgtgcatgagcttcaataaaggatatcaaaatctcacaaaattc |
6094510 |
T |
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| Q |
101 |
aatatagt-tttctcatttgtattgaaatccaacattactaaaaaactacgaaa------------------gatgtgttgatgcataagccaaagcatt |
181 |
Q |
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| T |
6094511 |
aatatagtctttctcatttgttttgaaatccaacattactaaaaaactacgaaaagaggtatgctagtacctgatgtgttgatgcataagccaaagcatt |
6094610 |
T |
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| Q |
182 |
ttctcttctcatagcagcaatttgtctggtcaacaattttgcttggattt |
231 |
Q |
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| T |
6094611 |
ttctcttctcatagcagcaatttgtctggtcaacaattttgcttggattt |
6094660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 4 - 240
Target Start/End: Original strand, 44188253 - 44188508
Alignment:
| Q |
4 |
tgaatttccctctacttgattcatttttataggaaaactaaaatggacaattttgtgcatgagcttcaataaaggatatcaaaatctcacaaaattcaat |
103 |
Q |
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| T |
44188253 |
tgaatttccctctaattgattcatttttataggaaaaccaaaatggacaattttgtgcatgagcttcaataaaggatatcaaaatctcacaaaattcaat |
44188352 |
T |
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| Q |
104 |
atagt-tttctcatttgtattgaaatccaacattactaaaaaactacgaaa------------------gatgtgttgatgcataagccaaagcattttc |
184 |
Q |
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| T |
44188353 |
atagtctttctcatttgtattgaaatcctacattactaaaaaactacgaaaagaggtattttagtacctgatgtattgatgcataaatcaaagcctattc |
44188452 |
T |
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| Q |
185 |
tcttctcatagcagcaatttgtctggtcaacaattttgcttggatttgctcctttg |
240 |
Q |
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| T |
44188453 |
acttcgcatagcagcaatttgtctgttcaacaattttgcttggatttgctcctttg |
44188508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 141; Significance: 5e-74; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 4 - 240
Target Start/End: Original strand, 32727380 - 32727635
Alignment:
| Q |
4 |
tgaatttccctctacttgattcatttttataggaaaactaaaatggacaattttgtgcatgagcttcaataaaggatatcaaaatctcacaaaattcaat |
103 |
Q |
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|||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32727380 |
tgaatttccctctaattgattcatttttataggaaaaccaaaatggacaattttgtgcatgagcttcaataaaggatatcaaaatctcacaaaattcaat |
32727479 |
T |
|
| Q |
104 |
atagt-tttctcatttgtattgaaatccaacattactaaaaaactacgaaa------------------gatgtgttgatgcataagccaaagcattttc |
184 |
Q |
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||||| |||||||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||| |||||| | ||| |
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| T |
32727480 |
atagtctttctcatttgtattgaaatcctacattactaaaaaactacgaaaagaggtattttagtacctgatgtattgatgcataaatcaaagcctattc |
32727579 |
T |
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| Q |
185 |
tcttctcatagcagcaatttgtctggtcaacaattttgcttggatttgctcctttg |
240 |
Q |
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|||| ||||||||||||||||||| | |||||||||||||||||||||||||||| |
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| T |
32727580 |
acttcgcatagcagcaatttgtctgttaaacaattttgcttggatttgctcctttg |
32727635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 154 - 240
Target Start/End: Complemental strand, 43095660 - 43095574
Alignment:
| Q |
154 |
gatgtgttgatgcataagccaaagcattttctcttctcatagcagcaatttgtctggtcaacaattttgcttggatttgctcctttg |
240 |
Q |
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| T |
43095660 |
gatgtgttgatgcataagccaaagccttttctcttctcatagcagcaatttgtctattcaacaatcttgcttggatttgctcctttg |
43095574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 148
Target Start/End: Complemental strand, 43095724 - 43095684
Alignment:
| Q |
108 |
ttttctcatttgtattgaaatccaacattactaaaaaacta |
148 |
Q |
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||||||||||||||||||||| || ||||||||||| |||| |
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| T |
43095724 |
ttttctcatttgtattgaaattcagcattactaaaatacta |
43095684 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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