View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10467_low_8 (Length: 250)
Name: NF10467_low_8
Description: NF10467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10467_low_8 |
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| [»] scaffold0007 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 17 - 237
Target Start/End: Complemental strand, 40725228 - 40725006
Alignment:
| Q |
17 |
gtaaatgtagttacagattatcacataactaatgtatttcaagtgggtttcctcgaagaaaataaaaaggatttcaaatgggttatttatttgtgcaatc |
116 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40725228 |
gtaaatgtagttacagattatcacataactaatgcatttcaagtgggtttcctcgaagaaaataaaaaggatttcaaatgggttatttatttgtgcaatc |
40725129 |
T |
|
| Q |
117 |
aaagtgattgctattactatactcaaacttaaaaagatcaaaatctctaatatcacgtttgatctaacttgttcaacttaaagctcttttgtaaggc-tt |
215 |
Q |
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|||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || |
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| T |
40725128 |
aaagtgattgatattactatactcaaacttaaaaacatcaaaatctctaatatcacgtttgatctagcttgttcaacttaaagctcttttgtaaggcttt |
40725029 |
T |
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| Q |
216 |
tacttcatcaaaa-tcagtcttc |
237 |
Q |
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||||||||||||| ||||||||| |
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| T |
40725028 |
tacttcatcaaaactcagtcttc |
40725006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 949607 - 949845
Alignment:
| Q |
1 |
ataccacattgatgtagtaaatgtagttacagattatcacataactaatgtatttcaagtgggtttcctcgaagaaaataaaaaggatttcaaatgggtt |
100 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| ||||||||| |
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| T |
949607 |
ataccatattgatgtagtaaatgtagttacagattatcacataactaatgcatttcaagtgggtttccttgaagaaaataaaaaggattttaaatgggtt |
949706 |
T |
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| Q |
101 |
atttatttgtgcaatcaaagtgattgctattactatactcaaacttaaaaagatcaaaatctctaatatcacgtttgatctaacttgttcaacttaaagc |
200 |
Q |
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|||||||||||||||||||||||||| ||||||||||||| |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
949707 |
atttatttgtgcaatcaaagtgattgatattactatactctaacttaaaaacatcaaaatctctaatatcacgtttgatctagcttgttcaacttaaagc |
949806 |
T |
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| Q |
201 |
tcttttgtaaggc-tttacttcatcaaaa-tcagtcttc |
237 |
Q |
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| T |
949807 |
tcttttgtaaggcttttacttcatcaaaactcagtcttc |
949845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 14172190 - 14172418
Alignment:
| Q |
1 |
ataccacattgatgtagtaaatgtagttacagattatcacataactaatgtatttcaagtgggtttcctcgaagaaaataaaaaggatttcaaatgggtt |
100 |
Q |
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|||||| |||||||||||||||||||||| |||||||||||||||||| | ||||||||||| |||||| |||||||||||||||||||||||||||||| |
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| T |
14172190 |
ataccatattgatgtagtaaatgtagttatagattatcacataactaaagcatttcaagtggttttccttgaagaaaataaaaaggatttcaaatgggtt |
14172289 |
T |
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| Q |
101 |
atttatttgtgcaatcaaagtgattgctattactatactcaaacttaaaaagatcaaaatctctaatatcacgtttgatctaacttgttcaacttaaagc |
200 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
14172290 |
atttatttgtgcaatcaaagtgattgatattactatactcaaacataaaaacatcaaaatctctaatatcacgtttgatctagcttgttcaacttaaagc |
14172389 |
T |
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| Q |
201 |
tcttttgtaaggc-tttacttcatcaaaa |
228 |
Q |
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||||||||||||| |||||||||| |||| |
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| T |
14172390 |
tcttttgtaaggcttttacttcattaaaa |
14172418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 255384 - 255156
Alignment:
| Q |
1 |
ataccacattgatgtagtaaatgtagttacagattatcacataactaatgtatttcaagtgggtttcctcgaagaaaataaaaaggatttcaaatgggtt |
100 |
Q |
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|||||| ||||||||||||||||||||| | |||||||||||| ||||| |||| |||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
255384 |
ataccatattgatgtagtaaatgtagttgaatattatcacataaataatgcattttaagtgggtttcctccaagaaaataaaaaggatttcaaatgggtt |
255285 |
T |
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| Q |
101 |
atttatttgtgcaatcaaagtgattgctattactatactcaaacttaaaaagatcaaaatctctaatatcacgtttgatctaacttgttcaacttaaagc |
200 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
255284 |
atttatttgtgcaatcaaagtgattgatattactatactcaaacttaaaaacatcaaaatctctaatatcacgtttgatctagcttgttcaacttaaagc |
255185 |
T |
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| Q |
201 |
tcttttgtaaggc-tttacttcatcaaaa |
228 |
Q |
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||||||||||||| |||||||||| |||| |
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| T |
255184 |
tcttttgtaaggcttttacttcattaaaa |
255156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 12 - 228
Target Start/End: Original strand, 7573900 - 7574117
Alignment:
| Q |
12 |
atgtagtaaatgtagttacagattatcacataactaatgtatttcaagtgggtttcctcgaagaaaataaaaaggatttcaaatgggttatttatttgtg |
111 |
Q |
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|||||| |||||||||||||||||||||||||||||||| |||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |
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| T |
7573900 |
atgtagcaaatgtagttacagattatcacataactaatgcatttcaagtgggtttcttcaaagaaaataaaaaggatttcaaatgggttatttatttgtg |
7573999 |
T |
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| Q |
112 |
caatcaaagtgattgctattactatactcaaacttaaaaagatcaaaatctctaatatcacgtttgatctaacttgttcaacttaaagctcttttgtaag |
211 |
Q |
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||||||||||||||| || ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||| |
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| T |
7574000 |
caatcaaagtgattgatactactatactcaaacttaaaaacatcaaaatctctaatatcacgtttgatctagcttgttcaactgaaagctcttttttaag |
7574099 |
T |
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| Q |
212 |
gc-tttacttcatcaaaa |
228 |
Q |
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|| ||||||||||||||| |
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| T |
7574100 |
gcttttacttcatcaaaa |
7574117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 85 - 160
Target Start/End: Original strand, 51383324 - 51383399
Alignment:
| Q |
85 |
ggatttcaaatgggttatttatttgtgcaatcaaagtgattgctattactatactcaaacttaaaaagatcaaaat |
160 |
Q |
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|||||| || |||||||||| ||||||||||||||||||||| || | ||||||||||||||| || |||||||| |
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| T |
51383324 |
ggatttaaagtgggttatttgtttgtgcaatcaaagtgattgatactgttatactcaaacttaagaacatcaaaat |
51383399 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 51383275 - 51383339
Alignment:
| Q |
1 |
ataccacattgatgtagtaaatgtagttacagattatcacataactaatgtatttcaagtgggtt |
65 |
Q |
| |
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|||||| |||||||||| || | |||||| |||||||||||||||||||| |||| ||||||||| |
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| T |
51383275 |
ataccatattgatgtaggaattttagttaaagattatcacataactaatggatttaaagtgggtt |
51383339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 97 - 148
Target Start/End: Complemental strand, 23262585 - 23262534
Alignment:
| Q |
97 |
ggttatttatttgtgcaatcaaagtgattgctattactatactcaaacttaa |
148 |
Q |
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|||||||| ||| ||||||||||||||||| ||||| ||||||||||||||| |
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| T |
23262585 |
ggttatttgtttatgcaatcaaagtgattgatattattatactcaaacttaa |
23262534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 97 - 148
Target Start/End: Original strand, 56477360 - 56477411
Alignment:
| Q |
97 |
ggttatttatttgtgcaatcaaagtgattgctattactatactcaaacttaa |
148 |
Q |
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|||||||| ||| |||||||| |||||||| ||||| ||||||||||||||| |
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| T |
56477360 |
ggttatttgtttatgcaatcatagtgattgatattattatactcaaacttaa |
56477411 |
T |
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