View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10468_high_25 (Length: 276)
Name: NF10468_high_25
Description: NF10468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10468_high_25 |
 | |
|
| [»] scaffold0264 (1 HSPs) |
| | |
|
| [»] scaffold0074 (1 HSPs) |
| | |
|
| [»] scaffold0007 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 257; Significance: 1e-143; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 22205016 - 22205284
Alignment:
| Q |
1 |
ttttataggtctattaatgctccttcgccaaatgagcttgttcctcaaacaaatcattcaacccaagattctagattttcacaagatccattttatcttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
22205016 |
ttttataggtctattaatgctccttcaccaaatgagcttgttcctcaaacaaatcattcaacccaagattctagattttcacaagatccattttatcttt |
22205115 |
T |
|
| Q |
101 |
cctataattgctcaagaaaccacagtaaaatcactaacaaaaacttcaaattacttctctcttatttgtcctccaacgccacaaatggcggaaatttcca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22205116 |
cctataattgctcaagaaaccacagtaaaatcactaacaaaaacttcaaattacttctctcttatttgtcctccaacgccacaaatggcggaaatttcca |
22205215 |
T |
|
| Q |
201 |
aaaagtaaaagtggaagaaatggtgtacggcctcttcttgtgtcgaggtgaccttcccgttcgcctctg |
269 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |
|
|
| T |
22205216 |
aaaagtaaaagtggaagaaatggtgtacggcctcttcatgtgtcgaggtgaccttcccgttcacctctg |
22205284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 20086147 - 20085877
Alignment:
| Q |
1 |
ttttataggtctattaatgctccttcgccaaatgagcttgttcctcaaacaaatcattcaacccaagattctagattttcacaagatccattttatcttt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |
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|
| T |
20086147 |
ttttataggtctattaatgctccttcgccaaatgagcttgttcctcaaacaaatcattcaaaccaagattctagattttcacaagatccaatttatcttt |
20086048 |
T |
|
| Q |
101 |
cctataattgctcaagaaaccacagtaaaatcactaacaaaaacttcaaattacttctctcttatttgtcctccaacgccacaaatggcggaaatttcca |
200 |
Q |
| |
|
|||||||||||||||||||| |||||| |||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| ||| || | |
|
|
| T |
20086047 |
cctataattgctcaagaaacaacagtacaatcactaacaataacttcaaattacttctctcttatctgtcctccaacgccacaaatggcgaaaaatttta |
20085948 |
T |
|
| Q |
201 |
aaaagtaaaagtggaagaaatggtgtacggcctcttcttgtgtcgaggtgaccttcccgttcgcctctgtg |
271 |
Q |
| |
|
| || |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
20085947 |
tactgttaaagtggatgaaatggtgtacggcctcttcttgtgtcgaggtgaccttcctgttcgcctctgtg |
20085877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 24385228 - 24385498
Alignment:
| Q |
1 |
ttttataggtctattaatgctccttcgccaaatgagcttgttcctcaaacaaatcattcaacccaagattctagattttcacaagatccattttatcttt |
100 |
Q |
| |
|
||||||| ||||||| ||||||||| |||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
24385228 |
ttttataaatctattattgctccttcatcaaatgagcttgttcctcaaacaaatgattcaaaacaagattctagattttcacaagatccaatttatcttt |
24385327 |
T |
|
| Q |
101 |
cctataattgctcaagaaaccacagtaaaatcactaacaaaaacttcaaattacttctctcttatttgtcctccaacgccacaaatggcggaaatttcca |
200 |
Q |
| |
|
|||||||||||||||||||||||| || |||||| ||| | |||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||| | |
|
|
| T |
24385328 |
cctataattgctcaagaaaccacaatataatcacaaacgataacttcaaattacttctctcttatctgtcctccaacgccacaaatggcaaaaaattcta |
24385427 |
T |
|
| Q |
201 |
aaaagtaaaagtggaagaaatggtgtacggcctcttcttgtgtcgaggtgaccttcccgttcgcctctgtg |
271 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |
|
|
| T |
24385428 |
tactgtaaaagtggaagaaatggtgtacggcctcttcatgtgtcgaggtgaccttcccgttcgtctctgtg |
24385498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 20238060 - 20237790
Alignment:
| Q |
1 |
ttttataggtctattaatgctccttcgccaaatgagcttgttcctcaaacaaatcattcaacccaagattctagattttcacaagatccattttatcttt |
100 |
Q |
| |
|
|||||||| |||| |||||||||||| | ||||||||||||||||||||||||| |||||| |||||||||| ||| ||||||||||| ||||||||| |
|
|
| T |
20238060 |
ttttatagatctactaatgctccttcactaaatgagcttgttcctcaaacaaatgattcaaaacaagattctaattttacacaagatccagtttatcttt |
20237961 |
T |
|
| Q |
101 |
cctataattgctcaagaaaccacagtaaaatcactaacaaaaacttcaaattacttctctcttatttgtcctccaacgccacaaatggcggaaatttcca |
200 |
Q |
| |
|
|| |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || ||||| |
|
|
| T |
20237960 |
ccgataattgcccaagaaaccacagtacaatcactaacaaaaacttcaaattacttctctcttatttgtcttccaacgccacaaatggcacaacattcca |
20237861 |
T |
|
| Q |
201 |
aaaagtaaaagtggaagaaatggtgtacggcctcttcttgtgtcgaggtgaccttcccgttcgcctctgtg |
271 |
Q |
| |
|
| | ||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
20237860 |
tattgctaaagtggaagaaaaggtgtacggcctcttcttgtgtcgaggtgaccttcctaatcgcctctgtg |
20237790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 22132044 - 22131774
Alignment:
| Q |
1 |
ttttataggtctattaatgctccttcgccaaatgagcttgttcctcaaacaaatcattcaacccaagattctagattttcacaagatccattttatcttt |
100 |
Q |
| |
|
|||||||| |||| |||||||||||| | ||||||||||||||||||||||||| |||||| |||||||||| ||| ||||||||||| ||||||||| |
|
|
| T |
22132044 |
ttttatagatctactaatgctccttcactaaatgagcttgttcctcaaacaaatgattcaaaacaagattctaattttacacaagatccagtttatcttt |
22131945 |
T |
|
| Q |
101 |
cctataattgctcaagaaaccacagtaaaatcactaacaaaaacttcaaattacttctctcttatttgtcctccaacgccacaaatggcggaaatttcca |
200 |
Q |
| |
|
|| |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || ||||| |
|
|
| T |
22131944 |
ccgataattgcccaagaaaccacagtacaatcactaacaaaaacttcaaattacttctctcttatttgtcttccaacgccacaaatggcacaacattcca |
22131845 |
T |
|
| Q |
201 |
aaaagtaaaagtggaagaaatggtgtacggcctcttcttgtgtcgaggtgaccttcccgttcgcctctgtg |
271 |
Q |
| |
|
| | ||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
22131844 |
tattgctaaagtggaagaaaaggtgtacggcctcttcttgtgtcgaggtgaccttcctaatcgcctctgtg |
22131774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 20205467 - 20205211
Alignment:
| Q |
1 |
ttttataggtctattaatgctccttcgccaaatgagcttgttcctcaaacaaatcattcaacccaagattctagattttcacaagatccattttatcttt |
100 |
Q |
| |
|
|||||||||||||||| || || ||| ||||||||||| | ||||| ||||||| |||| | |||||||||| | ||||| |||| |||||||||||| |
|
|
| T |
20205467 |
ttttataggtctattactgttctttcaccaaatgagctagctcctcgaacaaatgattccaaacaagattctaaactttcagaagaatcattttatcttt |
20205368 |
T |
|
| Q |
101 |
cctataattgctcaagaaaccacagtaaaatcactaacaaaaacttcaaattacttctctcttatttgtcctccaacgccacaaatggcggaaatttcca |
200 |
Q |
| |
|
|||||||||||||||||||||||| | ||||||| |||||||| ||||||||||||| |||||||||| || |||||||| | ||| ||| || || |
|
|
| T |
20205367 |
cctataattgctcaagaaaccacaacacaatcactgacaaaaacatcaaattacttctgtcttatttgttgtcgaacgccaccatcggcaaaaaatttca |
20205268 |
T |
|
| Q |
201 |
aaaagtaaaagtggaagaaatggtgtacggcctcttcttgtgtcgaggtgaccttcc |
257 |
Q |
| |
|
| | |||||||||||||| ||||| || |||||| ||||||||||||| ||||| |
|
|
| T |
20205267 |
tagccttaaagtggaagaaattgtgtatggtctcttcatgtgtcgaggtgatcttcc |
20205211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 22099490 - 22099234
Alignment:
| Q |
1 |
ttttataggtctattaatgctccttcgccaaatgagcttgttcctcaaacaaatcattcaacccaagattctagattttcacaagatccattttatcttt |
100 |
Q |
| |
|
|||||||||||||||| || || ||| ||||||||||| | ||||| ||||||| |||| | |||||||||| | ||||| |||| |||||||||||| |
|
|
| T |
22099490 |
ttttataggtctattactgttctttcaccaaatgagctagctcctcgaacaaatgattccaaacaagattctaaactttcagaagaatcattttatcttt |
22099391 |
T |
|
| Q |
101 |
cctataattgctcaagaaaccacagtaaaatcactaacaaaaacttcaaattacttctctcttatttgtcctccaacgccacaaatggcggaaatttcca |
200 |
Q |
| |
|
|||||||||||||||||||||||| | ||||||| |||||||| ||||||||||||| |||||||||| || |||||||| | ||| ||| || || |
|
|
| T |
22099390 |
cctataattgctcaagaaaccacaacacaatcactgacaaaaacatcaaattacttctgtcttatttgttgtcgaacgccaccatcggcaaaaaatttca |
22099291 |
T |
|
| Q |
201 |
aaaagtaaaagtggaagaaatggtgtacggcctcttcttgtgtcgaggtgaccttcc |
257 |
Q |
| |
|
| | |||||||||||||| ||||| || |||||| ||||||||||||| ||||| |
|
|
| T |
22099290 |
tagccttaaagtggaagaaattgtgtatggtctcttcatgtgtcgaggtgatcttcc |
22099234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 21972031 - 21971847
Alignment:
| Q |
1 |
ttttataggtctattaatgctccttcgccaaatgagcttgttcctcaaacaaatcattcaacccaagattctagatt---ttcacaagatccattttatc |
97 |
Q |
| |
|
||||||||||||| | ||| || ||| ||||||||||||| ||||||||||||| |||| | |||||||||| | | |||| ||||||||||||||| |
|
|
| T |
21972031 |
ttttataggtctacttatgttctttccccaaatgagcttgctcctcaaacaaatgattccatacaagattctaaaatactttcagaagatccattttatc |
21971932 |
T |
|
| Q |
98 |
tttcctataattgctcaagaaaccacagtaaaatcactaacaaaaacttcaaattacttctctcttatttgtcctccaacgccac |
182 |
Q |
| |
|
|||||||||||||||||||||| ||| || ||||||| |||||||| ||||| ||||||| |||||||||| || |||||||| |
|
|
| T |
21971931 |
tttcctataattgctcaagaaattacaatacaatcactgacaaaaacatcaaactacttctgtcttatttgttgtcgaacgccac |
21971847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0264 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: scaffold0264
Description:
Target: scaffold0264; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 16096 - 15829
Alignment:
| Q |
1 |
ttttataggtctattaatgctccttcgccaaatgagcttgttcctcaaacaaatcattcaacccaagattctagattttcacaagatccattttatcttt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
16096 |
ttttataggtctattaatgctccttcgccaaatgagcttgttcctcaaacaaatcattcaaaccaagattctagattttcacaagatccaatttatcttt |
15997 |
T |
|
| Q |
101 |
cctataattgctcaagaaaccacagtaaaatcactaacaaaaacttcaaattacttctctcttatttgtcctccaacgccacaaatggcggaaatttcca |
200 |
Q |
| |
|
|||||||||||||||||||| |||||| |||||||||||| |||||||||||||||||||||||| |||||||||||||||| |||||| |||||||||| |
|
|
| T |
15996 |
cctataattgctcaagaaacaacagtacaatcactaacaataacttcaaattacttctctcttatctgtcctccaacgccac-aatggcagaaatttcca |
15898 |
T |
|
| Q |
201 |
aaaagtaaaagtggaagaaatggtgtacggcctcttcttgtgtcgaggtgaccttcccgttcgcctctg |
269 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |
|
|
| T |
15897 |
aaaagtaaaagtggaagaaatggtgtacggcctcttcatgtgtcgaggtgaccttcccgttcacctctg |
15829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0074 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: scaffold0074
Description:
Target: scaffold0074; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 23 - 271
Target Start/End: Original strand, 47864 - 48112
Alignment:
| Q |
23 |
cttcgccaaatgagcttgttcctcaaacaaatcattcaacccaagattctagattttcacaagatccattttatctttcctataattgctcaagaaacca |
122 |
Q |
| |
|
|||| |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
47864 |
cttcaccaaatgagcttgttcctcaaacaaaacattcaaaacaagattctagattttcacaagatccaatttatctttcctataattgcccaagaaacca |
47963 |
T |
|
| Q |
123 |
cagtaaaatcactaacaaaaacttcaaattacttctctcttatttgtcctccaacgccacaaatggcggaaatttccaaaaagtaaaagtggaagaaatg |
222 |
Q |
| |
|
||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||| | || ||||||||||||||| |
|
|
| T |
47964 |
cagtacaatcactaagaaaaacttcaaattacttctctcttatttgtcctccaacgccacaaatggcgaaaaatcccatactgttaaagtggaagaaatg |
48063 |
T |
|
| Q |
223 |
gtgtacggcctcttcttgtgtcgaggtgaccttcccgttcgcctctgtg |
271 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
48064 |
ctgtatggcctcttcatgtgtcgaggtgaccttcccgttcgcctctgtg |
48112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 23 - 274
Target Start/End: Original strand, 5391 - 5642
Alignment:
| Q |
23 |
cttcgccaaatgagcttgttcctcaaacaaatcattcaacccaagattctagattttcacaagatccattttatctttcctataattgctcaagaaacca |
122 |
Q |
| |
|
|||| |||||||||||||||||||||||||| |||||| |||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
5391 |
cttcaccaaatgagcttgttcctcaaacaaactattcaaaacaagatactagattttcaaaagatcccttttatctttcctataattgctcaagaaacca |
5490 |
T |
|
| Q |
123 |
cagtaaaatcactaacaaaaacttcaaattacttctctcttatttgtcctccaacgccacaaatggcggaaatttccaaaaagtaaaagtggaagaaatg |
222 |
Q |
| |
|
|||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||| | || ||||||||||||| | |
|
|
| T |
5491 |
aagtacaatcactaagaaaaacttcaaattacttctctcttatttgtcctccaacgccacaaatggcgaaaaatcccatactgttaaagtggaagaaacg |
5590 |
T |
|
| Q |
223 |
gtgtacggcctcttcttgtgtcgaggtgaccttcccgttcgcctctgtgctc |
274 |
Q |
| |
|
|||| ||||||||| |||||||||||||||||||||||| ||||||||||| |
|
|
| T |
5591 |
ctgtatggcctcttcatgtgtcgaggtgaccttcccgttcacctctgtgctc |
5642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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