View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10468_high_26 (Length: 258)
Name: NF10468_high_26
Description: NF10468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10468_high_26 |
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Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 33389615 - 33389412
Alignment:
| Q |
1 |
aaaggtgagtctctttgacgtcgtcgatgacgactctactgccaagatggtgaaaacaaacggtggcttaaccgtcaacaacttcattaaccgttggaac |
100 |
Q |
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| T |
33389615 |
aaaggtgagtctcgttgacgtcgtcgatgacgactctactgccaagatggtgaaaacaaacggtggtttaaccgtcaacaacttcattaaccgttggaac |
33389516 |
T |
|
| Q |
101 |
agaaaaccttactcacaaaggtactatgaaatattggagaagaggaaaacccttccagtttggcaccagaaacaagattttttgcaggttttgaaggata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33389515 |
agaaaaccttactcacaaaggtactatgaaatattggagaagaggaaaacccttccagtttggcaccagaaacaagattttttgcaggttttgaaggata |
33389416 |
T |
|
| Q |
201 |
acca |
204 |
Q |
| |
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|||| |
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| T |
33389415 |
acca |
33389412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 92; Significance: 9e-45; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 84 - 243
Target Start/End: Complemental strand, 38781584 - 38781425
Alignment:
| Q |
84 |
tcattaaccgttggaacagaaaaccttactcacaaaggtactatgaaatattggagaagaggaaaacccttccagtttggcaccagaaacaagatttttt |
183 |
Q |
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|||||||||||||||| ||||||||||||| |||||||| |||| || ||||| ||||||||||||||||| |||||||| |||||| | ||||| || |
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| T |
38781584 |
tcattaaccgttggaatggaaaaccttactcgcaaaggtatcatgagattttggaaaagaggaaaacccttcctgtttggcatcagaaagaggatttctt |
38781485 |
T |
|
| Q |
184 |
gcaggttttgaaggataaccagattttgattcttgttggtgaaactggtagtggtaaaac |
243 |
Q |
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| |||||||||||||||| |||| |||||||||||||||||||||||||||||| ||||| |
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| T |
38781484 |
gaaggttttgaaggataatcagactttgattcttgttggtgaaactggtagtggaaaaac |
38781425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 89 - 243
Target Start/End: Original strand, 20814223 - 20814377
Alignment:
| Q |
89 |
aaccgttggaacagaaaaccttactcacaaaggtactatgaaatattggagaagaggaaaacccttccagtttggcaccagaaacaagattttttgcagg |
188 |
Q |
| |
|
||||| |||||| ||||||||||||| | ||| |||| || || ||||||||||||||||||||||| ||||||||||||||| | |||||||||||| |
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| T |
20814223 |
aaccgctggaacggaaaaccttactctccaagttacttcgagattttggagaagaggaaaacccttccggtttggcaccagaaagatgattttttgcagt |
20814322 |
T |
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| Q |
189 |
ttttgaaggataaccagattttgattcttgttggtgaaactggtagtggtaaaac |
243 |
Q |
| |
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|||| |||||||| |||||||| || || ||||||||||| |||||||| ||||| |
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|
| T |
20814323 |
tttttaaggataatcagattttaatcctcgttggtgaaaccggtagtggcaaaac |
20814377 |
T |
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