View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10468_high_29 (Length: 252)
Name: NF10468_high_29
Description: NF10468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10468_high_29 |
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| [»] scaffold0955 (1 HSPs) |
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| [»] scaffold0070 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 25384109 - 25383868
Alignment:
| Q |
1 |
aaatttccaatagttaatcaaataacattaatatgatnnnnnnnnnttacctgttgatggagcaatcccacccagaatggttggctgcttctcccaaagc |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
25384109 |
aaatttccaatagttaatcaaataacattaatatgataaaaaacaattacctgttgatggagcaatctcacccagaatggttggctgcttctcccaaagc |
25384010 |
T |
|
| Q |
101 |
atccctccatttttgcaaaatattcattgtacttccaaaacgctgctcatgtttaatgaatgcctcggcataacttcctaattggtgtcgaacatggaaa |
200 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
25384009 |
atccctccatttttgcaaaacattcattgtacttccaaaacgctgctcatgtttaatgaatgcctcggcataacttcctaattggtgtcgaacatgaaaa |
25383910 |
T |
|
| Q |
201 |
ggatcaacttcatagaaaactggaagtatcatttgccctttg |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
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| T |
25383909 |
ggatcaacttcatagaaaactggaagtatcatttgccctttg |
25383868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 47 - 242
Target Start/End: Complemental strand, 25692387 - 25692192
Alignment:
| Q |
47 |
ttacctgttgatggagcaatcccacccagaatggttggctgcttctcccaaagcatccctccatttttgcaaaatattcattgtacttccaaaacgctgc |
146 |
Q |
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||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |
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| T |
25692387 |
ttacctgttgatggagcaatcccaccctgaatggttggcttcttctcccaaagcatccctccatttttgcacaatattcattgtactttcaaaacgctgc |
25692288 |
T |
|
| Q |
147 |
tcatgtttaatgaatgcctcggcataacttcctaattggtgtcgaacatggaaaggatcaacttcatagaaaactggaagtatcatttgccctttg |
242 |
Q |
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||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |
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| T |
25692287 |
tcatgcttaacaaatgcctcggcataacttcctaattggtgtcgaacatggaaaggatcaacttcatagaaaactggaagtataatttgccgtttg |
25692192 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 47 - 223
Target Start/End: Complemental strand, 25645937 - 25645761
Alignment:
| Q |
47 |
ttacctgttgatggagcaatcccacccagaatggttggctgcttctcccaaagcatccctccatttttgcaaaatattcattgtacttccaaaacgctgc |
146 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||| | |||||||||||||| |||||||||||||| |||||||||||||||| |||||| |||| |
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| T |
25645937 |
ttacctgttgattgagcaatcccacccagaatggttggcaggttctcccaaagcatacctccatttttgcacaatattcattgtacttgcaaaacactgc |
25645838 |
T |
|
| Q |
147 |
tcatgtttaatgaatgcctcggcataacttcctaattggtgtcgaacatggaaaggatcaacttcatagaaaactgg |
223 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |
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| T |
25645837 |
tcatgtttaatgaatgcctcagcataacttcctaattggtgtcgaacatggaaaggatcgacttcataaaaaactgg |
25645761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 70 - 242
Target Start/End: Complemental strand, 25388697 - 25388525
Alignment:
| Q |
70 |
acccagaatggttggctgcttctcccaaagcatccctccatttttgcaaaatattcattgtacttccaaaacgctgctcatgtttaatgaatgcctcggc |
169 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |||||||| | |
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| T |
25388697 |
acccaaaatggttggctgcttctcccaaagcatccctccatttttgcacaatattcattgtacttccaaaacgctgctcatgcttaacaaatgcctcaac |
25388598 |
T |
|
| Q |
170 |
ataacttcctaattggtgtcgaacatggaaaggatcaacttcatagaaaactggaagtatcatttgccctttg |
242 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||| |||||||| | ||| |||||||||||| |
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| T |
25388597 |
ataacttcctaattggtgtcaaacatggaaaggatcaacttcataaaaaactgggaatataatttgccctttg |
25388525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0955 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: scaffold0955
Description:
Target: scaffold0955; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 4 - 242
Target Start/End: Complemental strand, 3442 - 3202
Alignment:
| Q |
4 |
tttccaatagttaatcaaataacattaatatgatnnnnnnnnn-ttacctgttgatggagcaatcccacccagaatggttggctgcttctcccaaagcat |
102 |
Q |
| |
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|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3442 |
tttctaatagttaatcaaataacattaatatgataataaaaaagttacctgttgatggagcaatcccacccagaatggttggctgcttctcccaaagcat |
3343 |
T |
|
| Q |
103 |
ccctccatttttgcaaaatattcattgtacttccaaaacgctgctcatgtttaatgaatgcctcggcat-aacttcctaattggtgtcgaacatggaaag |
201 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |||| |||||||||||||||||||||||||||||| |
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| T |
3342 |
ccctctatttttgcaaaatattcattgtacttccaaaacgctgctcatgcttaacaaatgcctcagcataaacttcctaattggtgtcgaacatggaaag |
3243 |
T |
|
| Q |
202 |
gatcaacttcatagaaaactggaagtatcatttgccctttg |
242 |
Q |
| |
|
||||||||||||| ||| |||| | ||| |||||| ||||| |
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| T |
3242 |
gatcaacttcataaaaatctggcaatataatttgctctttg |
3202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0070 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: scaffold0070
Description:
Target: scaffold0070; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 9 - 223
Target Start/End: Original strand, 39008 - 39224
Alignment:
| Q |
9 |
aatagttaatcaaataacattaatatgatnnnnnnnnn-ttacctgttgatggagcaatcccacccagaatggttggctgcttctcccaaagcatccctc |
107 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
39008 |
aatagttaatcaaataacattaatatgataatagaaaagttacctgttgatggagcaatgccacccagaatggttggctgcttctcccaaagcatccctc |
39107 |
T |
|
| Q |
108 |
catttttgcaaaatattcattgtacttccaaaacgctgctcatgtttaatgaatgcctcggcat-aacttcctaattggtgtcgaacatggaaaggatca |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |||| ||||||||||||||||||||||||||||||||||| |
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| T |
39108 |
catttttgcaaaatattcattgtacttccaaaacgctgctcatgcttaacaaatgcctcagcataaacttcctaattggtgtcgaacatggaaaggatca |
39207 |
T |
|
| Q |
207 |
acttcatagaaaactgg |
223 |
Q |
| |
|
|||||||| |||||||| |
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| T |
39208 |
acttcataaaaaactgg |
39224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0070; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 49 - 242
Target Start/End: Original strand, 19535 - 19728
Alignment:
| Q |
49 |
acctgttgatggagcaatcccacccagaatggttggctgcttctcccaaagcatccctccatttttgcaaaatattcattgtacttccaaaacgctgctc |
148 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |
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| T |
19535 |
acctgttgatggagcaatcccacccagaatggttggctgcttttcccaaagcatccctccatttttgcacaatattcattgtacttgcaaaacgctgctc |
19634 |
T |
|
| Q |
149 |
atgtttaatgaatgcctcggcataacttcctaattggtgtcgaacatggaaaggatcaacttcatagaaaactggaagtatcatttgccctttg |
242 |
Q |
| |
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||| |||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | ||| |||| ||||||| |
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| T |
19635 |
atgcttaacaaatgcctcagcataacttcctaattggtgtcgaacatggaaaggatcgacttcatagaaaactggcactataatttaccctttg |
19728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 117
Target Start/End: Original strand, 16499479 - 16499549
Alignment:
| Q |
47 |
ttacctgttgatggagcaatcccacccagaatggttggctgcttctcccaaagcatccctccatttttgca |
117 |
Q |
| |
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|||||| ||| | ||||||||||| ||||| | ||||||||||||| |||||| |||||||| ||||||| |
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| T |
16499479 |
ttacctattggtagagcaatcccagccagagagattggctgcttctctcaaagcctccctccacttttgca |
16499549 |
T |
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