View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10468_high_3 (Length: 453)

Name: NF10468_high_3
Description: NF10468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10468_high_3
NF10468_high_3
[»] chr8 (2 HSPs)
chr8 (1-437)||(11063311-11063747)
chr8 (60-106)||(28431383-28431429)
[»] chr5 (4 HSPs)
chr5 (62-166)||(17890717-17890821)
chr5 (63-147)||(42910450-42910534)
chr5 (74-121)||(40516775-40516822)
chr5 (80-120)||(19192067-19192107)
[»] chr1 (3 HSPs)
chr1 (78-165)||(5276945-5277032)
chr1 (60-120)||(34634146-34634206)
chr1 (108-164)||(44167589-44167645)
[»] chr7 (6 HSPs)
chr7 (335-427)||(29764260-29764352)
chr7 (82-148)||(23822869-23822935)
chr7 (60-98)||(36522526-36522564)
chr7 (42-78)||(26526614-26526650)
chr7 (33-120)||(36729542-36729629)
chr7 (131-167)||(44426043-44426079)
[»] chr4 (2 HSPs)
chr4 (31-173)||(32028192-32028334)
chr4 (29-166)||(33290860-33290997)
[»] chr2 (2 HSPs)
chr2 (27-166)||(12702846-12702986)
chr2 (71-124)||(5296842-5296895)
[»] chr6 (6 HSPs)
chr6 (33-141)||(32695412-32695520)
chr6 (82-165)||(30808440-30808523)
chr6 (71-166)||(33944756-33944851)
chr6 (33-148)||(32234436-32234553)
chr6 (132-166)||(34197875-34197909)
chr6 (114-166)||(32234500-32234552)
[»] chr3 (5 HSPs)
chr3 (84-146)||(810771-810833)
chr3 (80-147)||(23944565-23944632)
chr3 (71-152)||(14222651-14222732)
chr3 (131-168)||(31215818-31215855)
chr3 (71-123)||(27664089-27664141)
[»] scaffold0020 (1 HSPs)
scaffold0020 (60-112)||(172515-172567)
[»] scaffold0045 (1 HSPs)
scaffold0045 (98-165)||(58600-58667)


Alignment Details
Target: chr8 (Bit Score: 388; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 1 - 437
Target Start/End: Original strand, 11063311 - 11063747
Alignment:
Q  1 gaaatagatttagttatgattataagttagcatatgtttggtatcatggtgagtatataagaatcacgacgatccaccatgattttttaaaagttacact 100  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  11063311 gaaatagatttacttatgattataagttagcatatgtttggtatcatggtgagtatataagaatcacgacgatccaccataattttttaaaagttacact 11063410  T
Q  101 ttatagtttctataaaatcatgatggattaccgtgattctgacatatccaccttgatatcaaacatgtacttagaattttgaatttgctaaagagagtaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |||||||||||||| |||||||||||||||||||||||||    
T  11063411 ttatagtttctataaaatcatgatggattaccgtgattctgacctatccaccgtgatatgaaacatgtacttaggattttgaatttgctaaagagagtaa 11063510  T
Q  201 aataaagcatgatacatagattcaatgtatattcaactagagttagtaaacattaggaattggaattcaaacttttatgggtagcacatgtttgctgaaa 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11063511 aataaagcatgatacatagattcaatgtatattcaactagagttagtaaacattaggaattggaattcaaacttttatgggtagcacatgtttgctgaaa 11063610  T
Q  301 atgttacaccaaccctaaactactatcnnnnnnncatacctgtgacaataacattagtgaggtttgttccaaaaatgaggctggtgtgccttccagctgc 400  Q
    |||||||||||||||||||||||||||       |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  11063611 atgttacaccaaccctaaactactatctttttttcatacctgtgacaataacatcagtgaggtttgttccaaaaatgaggctggtgtgccttccagctgc 11063710  T
Q  401 tgcatctcttcctctaccgtaggatgggagtggtttg 437  Q
    |||||||||||||||||||||||||||||||||||||    
T  11063711 tgcatctcttcctctaccgtaggatgggagtggtttg 11063747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 60 - 106
Target Start/End: Original strand, 28431383 - 28431429
Alignment:
Q  60 agaatcacgacgatccaccatgattttttaaaagttacactttatag 106  Q
    ||||| || ||||||||||||||||||| ||||| ||||||||||||    
T  28431383 agaataacaacgatccaccatgatttttcaaaagctacactttatag 28431429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 62 - 166
Target Start/End: Complemental strand, 17890821 - 17890717
Alignment:
Q  62 aatcacgacgatccaccatgattttttaaaagttacactttatagtttctataaaatcatgatggattaccgtgattctgacatatccaccttgatatca 161  Q
    ||||| ||||||||| | |||||||||||||||||||||||||||||| | ||||||||   ||||| ||||||||||||||||| ||||  ||||| ||    
T  17890821 aatcatgacgatccatcgtgattttttaaaagttacactttatagtttatgtaaaatcacagtggatcaccgtgattctgacatacccacggtgatacca 17890722  T
Q  162 aacat 166  Q
    |||||    
T  17890721 aacat 17890717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 63 - 147
Target Start/End: Complemental strand, 42910534 - 42910450
Alignment:
Q  63 atcacgacgatccaccatgattttttaaaagttacactttatagtttctataaaatcatgatggattaccgtgattctgacatat 147  Q
    |||||||||||||||| |||||||| ||||| | |||||| ||| ||||| |||||||  |||||| ||||||||| || |||||    
T  42910534 atcacgacgatccaccgtgatttttcaaaagctgcactttgtagcttctacaaaatcacaatggatcaccgtgattttggcatat 42910450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 74 - 121
Target Start/End: Original strand, 40516775 - 40516822
Alignment:
Q  74 ccaccatgattttttaaaagttacactttatagtttctataaaatcat 121  Q
    |||||||||||||| ||||| |||||||| ||| ||||||||||||||    
T  40516775 ccaccatgatttttcaaaagctacactttgtagcttctataaaatcat 40516822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 120
Target Start/End: Original strand, 19192067 - 19192107
Alignment:
Q  80 tgattttttaaaagttacactttatagtttctataaaatca 120  Q
    ||||||||||||||||| |||||||||||| | ||||||||    
T  19192067 tgattttttaaaagttatactttatagtttttgtaaaatca 19192107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 78 - 165
Target Start/End: Complemental strand, 5277032 - 5276945
Alignment:
Q  78 catgattttttaaaagttacactttatagtttctataaaatcatgatggattaccgtgattctgacatatccaccttgatatcaaaca 165  Q
    |||||||||| ||||  |||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||  ||||| ||||||    
T  5277032 catgatttttcaaaaaatacactttgtagtttctacaaaatcatgatggatcaccgtgattctgacatatccactgtgataccaaaca 5276945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 60 - 120
Target Start/End: Original strand, 34634146 - 34634206
Alignment:
Q  60 agaatcacgacgatccaccatgattttttaaaagttacactttatagtttctataaaatca 120  Q
    |||||||| |||||||||| | |||||||||||  ||| | |||||||||||| |||||||    
T  34634146 agaatcacaacgatccaccgtaattttttaaaatctacgccttatagtttctacaaaatca 34634206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 164
Target Start/End: Original strand, 44167589 - 44167645
Alignment:
Q  108 ttctataaaatcatgatggattaccgtgattctgacatatccaccttgatatcaaac 164  Q
    ||||| ||||| ||||||||| |||||||||||||||||  | | ||||||||||||    
T  44167589 ttctacaaaattatgatggatcaccgtgattctgacatactctctttgatatcaaac 44167645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 7e-19; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 335 - 427
Target Start/End: Complemental strand, 29764352 - 29764260
Alignment:
Q  335 catacctgtgacaataacattagtgaggtttgttccaaaaatgaggctggtgtgccttccagctgctgcatctcttcctctaccgtaggatgg 427  Q
    ||||||||||||||||||||  ||||||||||||||||| ||||||||  ||   ||||| |||| ||||||||||||||||||||| |||||    
T  29764352 catacctgtgacaataacatccgtgaggtttgttccaaatatgaggcttctgaatcttcctgctggtgcatctcttcctctaccgtatgatgg 29764260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 82 - 148
Target Start/End: Original strand, 23822869 - 23822935
Alignment:
Q  82 attttttaaaagttacactttatagtttctataaaatcatgatggattaccgtgattctgacatatc 148  Q
    ||||||||||||||| ||||| |||||||||||||||||   ||||||| ||| |||||||||||||    
T  23822869 attttttaaaagttaaactttgtagtttctataaaatcacagtggattatcgtaattctgacatatc 23822935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 60 - 98
Target Start/End: Complemental strand, 36522564 - 36522526
Alignment:
Q  60 agaatcacgacgatccaccatgattttttaaaagttaca 98  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  36522564 agaatcacgacgatccatcatgattttttaaaagttaca 36522526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 42 - 78
Target Start/End: Original strand, 26526614 - 26526650
Alignment:
Q  42 tatcatggtgagtatataagaatcacgacgatccacc 78  Q
    ||||||||||||||||| |||||||||||||||||||    
T  26526614 tatcatggtgagtatatcagaatcacgacgatccacc 26526650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 33 - 120
Target Start/End: Original strand, 36729542 - 36729629
Alignment:
Q  33 tatgtttggtatcatggtgagtatataagaatcacgacgatccaccatgattttttaaaagttacactttatagtttctataaaatca 120  Q
    ||||||||||||| |||||  | | ||||||||||||| || ||||||||||||  ||||| |||||||| ||| || | ||||||||    
T  36729542 tatgtttggtatcttggtggttgtgtaagaatcacgactatgcaccatgattttgcaaaagctacactttgtaggttttgtaaaatca 36729629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 131 - 167
Target Start/End: Original strand, 44426043 - 44426079
Alignment:
Q  131 ccgtgattctgacatatccaccttgatatcaaacatg 167  Q
    |||||||||||||| ||||||| ||||||||||||||    
T  44426043 ccgtgattctgacaaatccaccatgatatcaaacatg 44426079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 31 - 173
Target Start/End: Original strand, 32028192 - 32028334
Alignment:
Q  31 catatgtttggtatcatggtgagtatataagaatcacgacgatccaccatgattttttaaaagttacactttatagtttctataaaatcatgatggatta 130  Q
    |||||||||||||||| |||   ||| | |||||||||| ||||||| ||||||||| ||||| |||||||||||| || |  ||||||| | || || |    
T  32028192 catatgtttggtatcacggtagatatgtcagaatcacgatgatccactatgatttttcaaaagctacactttatagcttatgcaaaatcacggtgaatca 32028291  T
Q  131 ccgtgattctgacatatccaccttgatatcaaacatgtactta 173  Q
    | ||||||| ||||| |||||| ||||| |||||||| |||||    
T  32028292 ctgtgattcagacatctccaccgtgataccaaacatgcactta 32028334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 29 - 166
Target Start/End: Complemental strand, 33290997 - 33290860
Alignment:
Q  29 agcatatgtttggtatcatggtgagtatataagaatcacgacgatccaccatgattttttaaaagttacactttatagtttctataaaatcatgatggat 128  Q
    |||||||||||| ||||| |||| || | | | ||||||||||||||||  ||| |||| ||||||| |||| | ||| || |  ||||||| | ||| |    
T  33290997 agcatatgtttgatatcacggtgggtgtgtcaaaatcacgacgatccactgtgaattttcaaaagtttcactctctagcttatgcaaaatcacggtgggt 33290898  T
Q  129 taccgtgattctgacatatccaccttgatatcaaacat 166  Q
    || |||||||||  || ||||||| |||||||||||||    
T  33290897 tatcgtgattctagcacatccaccgtgatatcaaacat 33290860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 27 - 166
Target Start/End: Original strand, 12702846 - 12702986
Alignment:
Q  27 ttagcatatgtttggtatcatggtgagtatataagaatcacgacgatccaccatgattttttaaaagt-tacactttatagtttctataaaatcatgatg 125  Q
    |||||||||||||||  ||| ||||  ||||| | |||||||| || |||| |||||||| ||||||  |||||||| ||||||||  ||||||||||||    
T  12702846 ttagcatatgtttggcttcacggtggatatatcataatcacgatgacccacaatgattttgtaaaaggctacactttgtagtttctgcaaaatcatgatg 12702945  T
Q  126 gattaccgtgattctgacatatccaccttgatatcaaacat 166  Q
      | ||||||||||| | ||||||||| | ||| |||||||    
T  12702946 agtcaccgtgattcttagatatccaccataataccaaacat 12702986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 71 - 124
Target Start/End: Original strand, 5296842 - 5296895
Alignment:
Q  71 gatccaccatgattttttaaaagttacactttatagtttctataaaatcatgat 124  Q
    ||||||||| ||||||||||||| |||||||||||||||||  |||||| ||||    
T  5296842 gatccaccacgattttttaaaagctacactttatagtttctgcaaaatcgtgat 5296895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 33 - 141
Target Start/End: Original strand, 32695412 - 32695520
Alignment:
Q  33 tatgtttggtatcatggtgagtatataagaatcacgacgatccaccatgattttttaaaagttacactttatagtttctataaaatcatgatggattacc 132  Q
    |||||||||||||| ||| | ||| | |||||||| |  ||||| | |||||||||||||| |||||||||||  ||||| |||||||||  ||||||||    
T  32695412 tatgtttggtatcacggttaatatgtcagaatcacaataatccatcgtgattttttaaaagctacactttataacttctacaaaatcatggcggattacc 32695511  T
Q  133 gtgattctg 141  Q
     | ||||||    
T  32695512 ataattctg 32695520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 82 - 165
Target Start/End: Complemental strand, 30808523 - 30808440
Alignment:
Q  82 attttttaaaagttacactttatagtttctataaaatcatgatggattaccgtgattctgacatatccaccttgatatcaaaca 165  Q
    |||||| |||||||||| ||| ||| || |  ||||||| ||||||| ||||||||||||| ||||||||| ||||| ||||||    
T  30808523 atttttcaaaagttacattttgtagctttttcaaaatcacgatggatcaccgtgattctgatatatccaccatgataccaaaca 30808440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 71 - 166
Target Start/End: Complemental strand, 33944851 - 33944756
Alignment:
Q  71 gatccaccatgattttttaaaagttacactttatagtttctataaaatcatgatggattaccgtgattctgacatatccaccttgatatcaaacat 166  Q
    |||||| | ||||| |||||||| || |||||  || ||||  ||||||| ||||||| ||||||||||| ||| ||||||| |||||||||||||    
T  33944851 gatccatcgtgattctttaaaagctaaactttgcagcttctgcaaaatcacgatggatcaccgtgattctaacacatccaccgtgatatcaaacat 33944756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 33 - 148
Target Start/End: Complemental strand, 32234553 - 32234436
Alignment:
Q  33 tatgtttggtatcatggtgagtatataagaatcacgacgatccaccatgattttttaaaagttacactttatagtttctataaaatcatgatg--gatta 130  Q
    |||||||||||||||||||  ||| | ||||||||   |||||||||| ||||| || ||| |||||||| ||| |||||| |||||| | ||   || |    
T  32234553 tatgtttggtatcatggtggatatgtcagaatcacagtgatccaccataattttctataagctacactttgtagcttctatgaaatcacggtgatcatca 32234454  T
Q  131 ccgtgattctgacatatc 148  Q
    ||||||||||||||||||    
T  32234453 ccgtgattctgacatatc 32234436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 132 - 166
Target Start/End: Original strand, 34197875 - 34197909
Alignment:
Q  132 cgtgattctgacatatccaccttgatatcaaacat 166  Q
    ||||||||||||||||||||| |||||||||||||    
T  34197875 cgtgattctgacatatccaccgtgatatcaaacat 34197909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 114 - 166
Target Start/End: Original strand, 32234500 - 32234552
Alignment:
Q  114 aaaatcatgatggattaccgtgattctgacatatccaccttgatatcaaacat 166  Q
    ||||| ||| ||||| || |||||||||||||||||||| ||||| |||||||    
T  32234500 aaaattatggtggatcactgtgattctgacatatccaccatgataccaaacat 32234552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 84 - 146
Target Start/End: Complemental strand, 810833 - 810771
Alignment:
Q  84 tttttaaaagttacactttatagtttctataaaatcatgatggattaccgtgattctgacata 146  Q
    ||||| |||| |||||||| ||| ||||||||||||||| ||||| ||| |||||||||||||    
T  810833 tttttgaaagctacactttgtagcttctataaaatcatggtggatcaccatgattctgacata 810771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 80 - 147
Target Start/End: Original strand, 23944565 - 23944632
Alignment:
Q  80 tgattttttaaaagttacactttatagtttctataaaatcatgatggattaccgtgattctgacatat 147  Q
    |||||||| |||| |||||||||||| ||| |  ||||||| |||| |||| ||||||||||||||||    
T  23944565 tgatttttaaaaaattacactttataatttttgcaaaatcacgatgaattatcgtgattctgacatat 23944632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 71 - 152
Target Start/End: Original strand, 14222651 - 14222732
Alignment:
Q  71 gatccaccatgattttttaaaagttacactttatagtttctataaaatcatgatggattaccgtgattctgacatatccacc 152  Q
    |||| ||| |||||||| ||||  |||||||||||| |||  |||||||||| ||||| ||| ||||||||| ||| |||||    
T  14222651 gatcgaccgtgatttttgaaaaactacactttatagcttcagtaaaatcatggtggatcaccatgattctgatatagccacc 14222732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 131 - 168
Target Start/End: Original strand, 31215818 - 31215855
Alignment:
Q  131 ccgtgattctgacatatccaccttgatatcaaacatgt 168  Q
    |||||||||||||| ||||||||||||| |||||||||    
T  31215818 ccgtgattctgacacatccaccttgataccaaacatgt 31215855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 71 - 123
Target Start/End: Original strand, 27664089 - 27664141
Alignment:
Q  71 gatccaccatgattttttaaaagttacactttatagtttctataaaatcatga 123  Q
    |||||||| ||||||| ||||||||||||||||||  || || ||||||||||    
T  27664089 gatccaccttgattttgtaaaagttacactttataccttttacaaaatcatga 27664141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 60 - 112
Target Start/End: Original strand, 172515 - 172567
Alignment:
Q  60 agaatcacgacgatccaccatgattttttaaaagttacactttatagtttcta 112  Q
    ||||||||||| |||||||||||||||| ||||| |||||||| ||| |||||    
T  172515 agaatcacgacaatccaccatgatttttcaaaagctacactttgtagcttcta 172567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 98 - 165
Target Start/End: Original strand, 58600 - 58667
Alignment:
Q  98 actttatagtttctataaaatcatgatggattaccgtgattctgacatatccaccttgatatcaaaca 165  Q
    |||||| ||||| | |||||||| ||||||| ||||| ||||||||||| ||||| | ||||||||||    
T  58600 actttaaagtttgtgtaaaatcacgatggatcaccgtaattctgacatacccaccataatatcaaaca 58667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University