View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10468_high_33 (Length: 247)
Name: NF10468_high_33
Description: NF10468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10468_high_33 |
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Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 3427445 - 3427203
Alignment:
| Q |
1 |
atctacaaaagtacaaaaaagccattgcactcatgaaagccttaccttccagtgatccacgtagtttcatacaacaagcaaatattcattgtgcttattg |
100 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||| |||| |||||||||||||||||||||||||||||| || |||||||||||||| |
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| T |
3427445 |
atctacaaaagtacaaaaaagccattgaactcatgaaagccttaccatccaatgatccacgtagtttcatacaacaagcaaacatccattgtgcttattg |
3427346 |
T |
|
| Q |
101 |
tgatggtgcatattcccaagttggtttccctaaccttgatcttcaagttcatagttcttggctcttttttccttttcatagatggtatctttatttctat |
200 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3427345 |
tgatggtgcatattcccaagttggtttccctaatcttgatcttcaagttcataattcttggctcttttttccttttcatagatggtatctttatttctat |
3427246 |
T |
|
| Q |
201 |
gaaagaatcttgggtagcttgatcaatgatccaacctttgctt |
243 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3427245 |
gaaagaatcttgggtagcttgatcaatgatccaacctttgctt |
3427203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 3433636 - 3433394
Alignment:
| Q |
1 |
atctacaaaagtacaaaaaagccattgcactcatgaaagccttaccttccagtgatccacgtagtttcatacaacaagcaaatattcattgtgcttattg |
100 |
Q |
| |
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|||||||||| |||||||||||||||| |||||||||||||||||| |||| ||||||||||| |||||||||||||||||| || |||||||||||||| |
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| T |
3433636 |
atctacaaaaatacaaaaaagccattgaactcatgaaagccttaccatccaatgatccacgtaatttcatacaacaagcaaacatccattgtgcttattg |
3433537 |
T |
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| Q |
101 |
tgatggtgcatattcccaagttggtttccctaaccttgatcttcaagttcatagttcttggctcttttttccttttcatagatggtatctttatttctat |
200 |
Q |
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||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3433536 |
tgatggtgcatattcccaagttggttttcctaatcttgatcttcaagttcatagttcttggctcttttttccttttcatagatggtatctttatttctat |
3433437 |
T |
|
| Q |
201 |
gaaagaatcttgggtagcttgatcaatgatccaacctttgctt |
243 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3433436 |
gaaagaatcttgggtagcttgatcaatgatccaacctttgctt |
3433394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 175; Significance: 2e-94; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 11896831 - 11897073
Alignment:
| Q |
1 |
atctacaaaagtacaaaaaagccattgcactcatgaaagccttaccttccagtgatccacgtagtttcatacaacaagcaaatattcattgtgcttattg |
100 |
Q |
| |
|
|||| ||||| |||||||||||||||| |||||||||||||||||| |||| |||||||||||||||||| ||||||||||| | || ||||||||||| |
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| T |
11896831 |
atcttcaaaaatacaaaaaagccattgaactcatgaaagccttaccatccaatgatccacgtagtttcatgcaacaagcaaacgtccactgtgcttattg |
11896930 |
T |
|
| Q |
101 |
tgatggtgcatattcccaagttggtttccctaaccttgatcttcaagttcatagttcttggctcttttttccttttcatagatggtatctttatttctat |
200 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||| | |||||||||||||||||||||||||| ||||| |||||||||||| |
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| T |
11896931 |
tgatggtgcatattcccaagttggcttccctaaccttgatcttcaagttcatggctcttggctcttttttccttttcataggtggtacctttatttctat |
11897030 |
T |
|
| Q |
201 |
gaaagaatcttgggtagcttgatcaatgatccaacctttgctt |
243 |
Q |
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||||| ||||| ||||||||||||||||||||||||||||||| |
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| T |
11897031 |
gaaaggatcttaggtagcttgatcaatgatccaacctttgctt |
11897073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 11912164 - 11912406
Alignment:
| Q |
1 |
atctacaaaagtacaaaaaagccattgcactcatgaaagccttaccttccagtgatccacgtagtttcatacaacaagcaaatattcattgtgcttattg |
100 |
Q |
| |
|
|||| ||||| ||||| |||||||||| |||| |||||| ||||| |||| |||||||||||||||||||||||||||||| || |||||||||||||| |
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| T |
11912164 |
atcttcaaaaatacaagaaagccattgagctcacgaaagcattaccatccaatgatccacgtagtttcatacaacaagcaaacatccattgtgcttattg |
11912263 |
T |
|
| Q |
101 |
tgatggtgcatattcccaagttggtttccctaaccttgatcttcaagttcatagttcttggctcttttttccttttcatagatggtatctttatttctat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| || |
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| T |
11912264 |
tgatggtgcatattcccaagttggtttccctaaccttgatcttcaagttcataactcttggctcttttttccttttcatagatggtacctttatttccat |
11912363 |
T |
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| Q |
201 |
gaaagaatcttgggtagcttgatcaatgatccaacctttgctt |
243 |
Q |
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|| |||||||||||||| ||||||||||||||| ||||||||| |
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| T |
11912364 |
gagagaatcttgggtagtttgatcaatgatccagcctttgctt |
11912406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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