View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10468_high_39 (Length: 240)

Name: NF10468_high_39
Description: NF10468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10468_high_39
NF10468_high_39
[»] chr5 (6 HSPs)
chr5 (18-240)||(4829039-4829262)
chr5 (180-226)||(7212340-7212386)
chr5 (177-224)||(37518128-37518175)
chr5 (179-209)||(40740372-40740402)
chr5 (186-223)||(26636879-26636916)
chr5 (180-224)||(34255233-34255277)
[»] chr3 (7 HSPs)
chr3 (179-225)||(46354791-46354837)
chr3 (180-227)||(38074635-38074682)
chr3 (180-227)||(43132594-43132641)
chr3 (179-212)||(45010832-45010865)
chr3 (180-212)||(24565864-24565896)
chr3 (180-224)||(50970607-50970651)
chr3 (180-224)||(51073743-51073787)
[»] chr8 (2 HSPs)
chr8 (180-227)||(33058612-33058659)
chr8 (180-224)||(4937554-4937598)
[»] chr6 (2 HSPs)
chr6 (180-211)||(24265554-24265585)
chr6 (180-212)||(4976326-4976358)
[»] chr7 (2 HSPs)
chr7 (180-214)||(6622591-6622625)
chr7 (177-225)||(47140233-47140281)
[»] chr4 (3 HSPs)
chr4 (186-224)||(39078931-39078969)
chr4 (180-212)||(29910642-29910674)
chr4 (179-211)||(45096607-45096639)
[»] chr2 (2 HSPs)
chr2 (178-215)||(33284752-33284789)
chr2 (186-234)||(24765642-24765690)
[»] chr1 (2 HSPs)
chr1 (181-221)||(15285471-15285511)
chr1 (177-209)||(37921684-37921716)


Alignment Details
Target: chr5 (Bit Score: 147; Significance: 1e-77; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 4829262 - 4829039
Alignment:
Q  18 cataacctacaaacacccaccatcatttgatttaaagtatgtcttctactccgattttcctatttcatattcttttggcctttttaaaagnnnnnnncaa 117  Q
    ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||       |||    
T  4829262 cataacctataaacacctaccatcatttgatttaaagtatgtcttctactccgattttcctatatcatattcttttggcctttttaaaagaaaaaaacaa 4829163  T
Q  118 attagaagcaatatttatacatatatatttcttcaagtcactgttttaaac-nnnnnnnnttattttttagatttattaaataattgatgtatctaaacc 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||         || |||||||||||||||||||||||||||||||||||||    
T  4829162 attagaagcaatatttatacatatatatttcttcaagtcactgttttaaacaaaaatttttttttttttagatttattaaataattgatgtatctaaacc 4829063  T
Q  217 atattataattgtgatacgtcaat 240  Q
    || |||||||| ||||||||||||    
T  4829062 atgttataattttgatacgtcaat 4829039  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 180 - 226
Target Start/End: Complemental strand, 7212386 - 7212340
Alignment:
Q  180 ttttttagatttattaaataattgatgtatctaaaccatattataat 226  Q
    ||||||||||| ||||||||||||||||||||||| |||| ||||||    
T  7212386 ttttttagattcattaaataattgatgtatctaaaacataatataat 7212340  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 224
Target Start/End: Complemental strand, 37518175 - 37518128
Alignment:
Q  177 ttattttttagatttattaaataattgatgtatctaaaccatattata 224  Q
    |||||||||| ||| |||||||||||||||||||||||  ||||||||    
T  37518175 ttattttttatattcattaaataattgatgtatctaaattatattata 37518128  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 209
Target Start/End: Original strand, 40740372 - 40740402
Alignment:
Q  179 attttttagatttattaaataattgatgtat 209  Q
    |||||||||||||||||||||||||||||||    
T  40740372 attttttagatttattaaataattgatgtat 40740402  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 223
Target Start/End: Complemental strand, 26636916 - 26636879
Alignment:
Q  186 agatttattaaataattgatgtatctaaaccatattat 223  Q
    ||||||||||||||| |||||||||||||| |||||||    
T  26636916 agatttattaaataagtgatgtatctaaactatattat 26636879  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 224
Target Start/End: Complemental strand, 34255277 - 34255233
Alignment:
Q  180 ttttttagatttattaaataattgatgtatctaaaccatattata 224  Q
    ||||||||||| ||||||||| ||||||||||| || ||||||||    
T  34255277 ttttttagattcattaaataagtgatgtatctagactatattata 34255233  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 179 - 225
Target Start/End: Original strand, 46354791 - 46354837
Alignment:
Q  179 attttttagatttattaaataattgatgtatctaaaccatattataa 225  Q
    ||||| ||||||||||||| ||||||||||||||||| |||||||||    
T  46354791 attttatagatttattaaacaattgatgtatctaaactatattataa 46354837  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 227
Target Start/End: Original strand, 38074635 - 38074682
Alignment:
Q  180 ttttttagatttattaaataattgatgtatctaaaccatattataatt 227  Q
    |||||||||| ||||||||||||||||||| | ||| |||||||||||    
T  38074635 ttttttagatatattaaataattgatgtatttgaactatattataatt 38074682  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 227
Target Start/End: Original strand, 43132594 - 43132641
Alignment:
Q  180 ttttttagatttattaaataattgatgtatctaaaccatattataatt 227  Q
    ||||| ||||||||||||||| |||||||||| ||| |||||||||||    
T  43132594 tttttcagatttattaaataagtgatgtatctgaactatattataatt 43132641  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 212
Target Start/End: Complemental strand, 45010865 - 45010832
Alignment:
Q  179 attttttagatttattaaataattgatgtatcta 212  Q
    |||||||||||||||| |||||||||||||||||    
T  45010865 attttttagatttattgaataattgatgtatcta 45010832  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 212
Target Start/End: Original strand, 24565864 - 24565896
Alignment:
Q  180 ttttttagatttattaaataattgatgtatcta 212  Q
    ||||||||||||||||||||||| |||||||||    
T  24565864 ttttttagatttattaaataattaatgtatcta 24565896  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 224
Target Start/End: Complemental strand, 50970651 - 50970607
Alignment:
Q  180 ttttttagatttattaaataattgatgtatctaaaccatattata 224  Q
    ||||| ||||| ||||||||||||||||||||||||  |||||||    
T  50970651 tttttcagattcattaaataattgatgtatctaaactttattata 50970607  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 224
Target Start/End: Complemental strand, 51073787 - 51073743
Alignment:
Q  180 ttttttagatttattaaataattgatgtatctaaaccatattata 224  Q
    ||||| ||||| ||||||||||||||||||||||||  |||||||    
T  51073787 tttttcagattcattaaataattgatgtatctaaactttattata 51073743  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 227
Target Start/End: Original strand, 33058612 - 33058659
Alignment:
Q  180 ttttttagatttattaaataattgatgtatctaaaccatattataatt 227  Q
    ||||| ||||| |||||||||||||||||||| ||| |||||||||||    
T  33058612 tttttcagattcattaaataattgatgtatctgaactatattataatt 33058659  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 224
Target Start/End: Original strand, 4937554 - 4937598
Alignment:
Q  180 ttttttagatttattaaataattgatgtatctaaaccatattata 224  Q
    ||||||||||| ||||||||||| |||||| ||||| ||||||||    
T  4937554 ttttttagattcattaaataatttatgtatataaactatattata 4937598  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 211
Target Start/End: Complemental strand, 24265585 - 24265554
Alignment:
Q  180 ttttttagatttattaaataattgatgtatct 211  Q
    ||||||||||||||||||||||||||||||||    
T  24265585 ttttttagatttattaaataattgatgtatct 24265554  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 212
Target Start/End: Original strand, 4976326 - 4976358
Alignment:
Q  180 ttttttagatttattaaataattgatgtatcta 212  Q
    |||||||| ||||||||||||||||||||||||    
T  4976326 ttttttaggtttattaaataattgatgtatcta 4976358  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 214
Target Start/End: Original strand, 6622591 - 6622625
Alignment:
Q  180 ttttttagatttattaaataattgatgtatctaaa 214  Q
    ||||||||||||| |||||||||||||||||||||    
T  6622591 ttttttagatttaataaataattgatgtatctaaa 6622625  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 225
Target Start/End: Original strand, 47140233 - 47140281
Alignment:
Q  177 ttattttttagatttattaaataattgatgtatctaaaccatattataa 225  Q
    |||||||| ||||||||| ||||||||||| |||| ||| |||||||||    
T  47140233 ttatttttcagatttattgaataattgatgcatctgaactatattataa 47140281  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 224
Target Start/End: Original strand, 39078931 - 39078969
Alignment:
Q  186 agatttattaaataattgatgtatctaaaccatattata 224  Q
    |||||||||||||||||||||||| ||||| ||||||||    
T  39078931 agatttattaaataattgatgtatttaaactatattata 39078969  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 212
Target Start/End: Complemental strand, 29910674 - 29910642
Alignment:
Q  180 ttttttagatttattaaataattgatgtatcta 212  Q
    ||||||||||||||| |||||||||||||||||    
T  29910674 ttttttagatttattgaataattgatgtatcta 29910642  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 211
Target Start/End: Original strand, 45096607 - 45096639
Alignment:
Q  179 attttttagatttattaaataattgatgtatct 211  Q
    |||||||||||||||| ||||||||||||||||    
T  45096607 attttttagatttattgaataattgatgtatct 45096639  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 215
Target Start/End: Original strand, 33284752 - 33284789
Alignment:
Q  178 tattttttagatttattaaataattgatgtatctaaac 215  Q
    ||||||||||||||||| ||||| ||||||||||||||    
T  33284752 tattttttagatttattgaataaatgatgtatctaaac 33284789  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 234
Target Start/End: Complemental strand, 24765690 - 24765642
Alignment:
Q  186 agatttattaaataattgatgtatctaaaccatattataattgtgatac 234  Q
    ||||||||||||||| |||||||||| ||| |||||||| ||| |||||    
T  24765690 agatttattaaataaatgatgtatctgaactatattatacttgagatac 24765642  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 221
Target Start/End: Original strand, 15285471 - 15285511
Alignment:
Q  181 tttttagatttattaaataattgatgtatctaaaccatatt 221  Q
    |||||||||||||| |||||||||||||||| | |||||||    
T  15285471 tttttagatttattgaataattgatgtatctgatccatatt 15285511  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 209
Target Start/End: Original strand, 37921684 - 37921716
Alignment:
Q  177 ttattttttagatttattaaataattgatgtat 209  Q
    |||||||| ||||||||||||||||||||||||    
T  37921684 ttatttttcagatttattaaataattgatgtat 37921716  T

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