View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10468_high_40 (Length: 239)
Name: NF10468_high_40
Description: NF10468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10468_high_40 |
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Alignment Details
Target: chr2 (Bit Score: 113; Significance: 2e-57; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 77 - 223
Target Start/End: Original strand, 7822137 - 7822291
Alignment:
| Q |
77 |
ggttcttctgatattatgcttgttgagttgtttacaa------gttaccacggt--atgatattattcaagaatatgggtatcaatgagtttgtttgcta |
168 |
Q |
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| T |
7822137 |
ggttcttctgatattatgcttgttgagttgtttacaattacaagttaccacggtgtatgatattattcaagaatatgggtatcaatgagtttgtttgcta |
7822236 |
T |
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| Q |
169 |
ttctgatttacttctttgcatcaatctatcaactgtcccattgtcaagtaccaat |
223 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |
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| T |
7822237 |
ttctgatttacttctttgcatcaatctatcaactgtcccgttgtgaagtaccaat |
7822291 |
T |
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