View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10468_low_10 (Length: 429)
Name: NF10468_low_10
Description: NF10468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10468_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 329; Significance: 0; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 19 - 401
Target Start/End: Original strand, 44692381 - 44692763
Alignment:
| Q |
19 |
gaatcgtctcaacaggctatgcccgcttatggatatgaaattgttcaaacactgattactgatatagagccagatcagcatgtgaagacggctatgaatg |
118 |
Q |
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|||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
44692381 |
gaatcgtcgcaacaggctatgtccgcttatggatatgaaattgttcaaacactgattactgatatagagccagatcagcatgtgaagacggccatgaatg |
44692480 |
T |
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| Q |
119 |
aaatcaatgctggtaagttattttaaaaccatgagatatatgtccccacaacatt----gctattatatttatatgagttaaacttggtatgctcagttt |
214 |
Q |
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| T |
44692481 |
aaatcaatgctggtaagtttttttaaaaccatgagat----gtccccacaacatatatagctattatatttatatgagttaaacttggtatgctcagttt |
44692576 |
T |
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| Q |
215 |
ctgttcataatttacattaattattctccaaaagaggtcaataagtgtttaagaaagcctacctttttccttacggtacgtcttacatgtatcgaaaaac |
314 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44692577 |
ctgttcataatttacatgaattattctccaaaagaggtcaataagtgtttaagaaagcctacctttttccttacggtacgtcttacatgtatcgaaaaac |
44692676 |
T |
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| Q |
315 |
tatgtagggatgcttgtaatatacaagctcttgttattaagcatctgatcctaagtctaattttgttgcaaaatttattttggaatt |
401 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44692677 |
tatgtagggatgcttgtaatatacaagctcttgttattaagcatctgatcctaagtctaattttgttgcaaaatttattttggaatt |
44692763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 26 - 125
Target Start/End: Original strand, 44632216 - 44632315
Alignment:
| Q |
26 |
ctcaacaggctatgcccgcttatggatatgaaattgttcaaacactgattactgatatagagccagatcagcatgtgaagacggctatgaatgaaatcaa |
125 |
Q |
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|||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |
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| T |
44632216 |
ctcaacaggctatgtcagcttatggatatgaaattgttcaaacactgattactgatatagagccagatgagcatgtgaagcgggctatgaatgaaatcaa |
44632315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 19 - 133
Target Start/End: Original strand, 44653682 - 44653796
Alignment:
| Q |
19 |
gaatcgtctcaacaggctatgcccgcttatggatatgaaattgttcaaacactgattactgatatagagccagatcagcatgtgaagacggctatgaatg |
118 |
Q |
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||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |
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| T |
44653682 |
gaatcatctcaacaggctatgtcagcttatggatatgaaattgttcaaacactgattactgatatagagccagatgtccatgtgaagcgggctatgaatg |
44653781 |
T |
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| Q |
119 |
aaatcaatgctggta |
133 |
Q |
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| T |
44653782 |
aaatcaatgcaggta |
44653796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 19 - 133
Target Start/End: Original strand, 44682690 - 44682804
Alignment:
| Q |
19 |
gaatcgtctcaacaggctatgcccgcttatggatatgaaattgttcaaacactgattactgatatagagccagatcagcatgtgaagacggctatgaatg |
118 |
Q |
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||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |
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| T |
44682690 |
gaatcatctcaacaggctatgtcagcttatggatatgaaattgttcaaacactgattactgatatagagccagatgtccatgtgaagcgggctatgaatg |
44682789 |
T |
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| Q |
119 |
aaatcaatgctggta |
133 |
Q |
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|||||||||| |||| |
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| T |
44682790 |
aaatcaatgcaggta |
44682804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 21 - 155
Target Start/End: Complemental strand, 44636676 - 44636542
Alignment:
| Q |
21 |
atcgtctcaacaggctatgcccgcttatggatatgaaattgttcaaacactgattactgatatagagccagatcagcatgtgaagacggctatgaatgaa |
120 |
Q |
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||||||| ||||||||||| | |||||||| |||||||||||||||||||||||| ||||||||||||||| |||||||||| ||||||||||||| |
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| T |
44636676 |
atcgtcttaacaggctatgtcagcttatggctatgaaattgttcaaacactgattgttgatatagagccagacgagcatgtgaaacgggctatgaatgaa |
44636577 |
T |
|
| Q |
121 |
atcaatgctggtaagttattttaaaaccatgagat |
155 |
Q |
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|||||||| |||| ||| |||||| |||||||||| |
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| T |
44636576 |
atcaatgccggtatgtttttttaagaccatgagat |
44636542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 310 - 394
Target Start/End: Complemental strand, 44636496 - 44636412
Alignment:
| Q |
310 |
aaaactatgtagggatgcttgtaatatacaagctcttgttattaagcatctgatcctaagtctaattttgttgcaaaatttattt |
394 |
Q |
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||||||||| ||||| ||||||||||||||| ||| |||||||| || ||||||||| |||||||||||||||||| |||||| |
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| T |
44636496 |
aaaactatgcggggatacttgtaatatacaagttctaattattaagtatttgatcctaaatctaattttgttgcaaaaattattt |
44636412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 257 - 355
Target Start/End: Original strand, 44654120 - 44654217
Alignment:
| Q |
257 |
aagtgtttaagaaagcctacctttttccttacggtacgtcttacatgtatcgaaaaactatgtagggatgcttgtaatatacaagctcttgttattaag |
355 |
Q |
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|||||||| |||| ||||||| ||||||| ||||| |||| | ||||||| ||||| ||||| |||||||| |||||||||||||||| |||||||| |
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| T |
44654120 |
aagtgtttgagaatgcctacccttttcctcacggttcgtcatgcatgtattgaaaa-ctatgagaggatgcttttaatatacaagctcttattattaag |
44654217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 322 - 378
Target Start/End: Original strand, 44682965 - 44683021
Alignment:
| Q |
322 |
ggatgcttgtaatatacaagctcttgttattaagcatctgatcctaagtctaatttt |
378 |
Q |
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|||||||| |||||||||||||||| |||||||| || ||||| ||| |||| |||| |
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| T |
44682965 |
ggatgcttttaatatacaagctcttattattaagtatttgatcgtaaatctattttt |
44683021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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