View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10468_low_12 (Length: 423)
Name: NF10468_low_12
Description: NF10468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10468_low_12 |
 | |
|
| [»] scaffold0182 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 380; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 18 - 413
Target Start/End: Complemental strand, 48025371 - 48024976
Alignment:
| Q |
18 |
tattatcaacaacaaaagcataacttataaactaattcaactcaactcaaaaaacaatagaaaattgacacactatggcaatttcccagatcgaaaaatt |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48025371 |
tattatcaacaacaaaagcataacttataaactaattcaactcaactcaaaaaacgatagaaaattgacacactatggcaatttcccagatcgaaaaatt |
48025272 |
T |
|
| Q |
118 |
gagaatttagaagcaacagagtatgaataatcaatttcattctccttcaaaaactcctccagaatccgtttagcttcttcaggatcagaactctcacact |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48025271 |
gagaatttagaagcaacagagtatgaataatcaatttcattctccttcaaaaactcctccagaatccgtttagcttcttcaggatcagaactctcacact |
48025172 |
T |
|
| Q |
218 |
caatctcaaacaaagtcccaaaatcaaaaccagtttcatcaacttccaatttcaaacctttccattcataaacattcctcacattcctaaaatcccctaa |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48025171 |
caatctcaaacaaagtcccaaaatcaaaaccagtttcatctacttccaatttcaaacctttccattcataaacattcctcacattcctaaaatcccctaa |
48025072 |
T |
|
| Q |
318 |
acccacaaacccatttttaccaaccacgccaaattcctccttcactctccccataatcctcgaatccacaaaacccaacaacttccccggttcatc |
413 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
48025071 |
acccacaaacccatttttaccaaccaccccaaattcctccttcactctccccataatcctggaatccacaaaacccaacaacttccccggttcatc |
48024976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 19 - 395
Target Start/End: Complemental strand, 48020586 - 48020205
Alignment:
| Q |
19 |
attatcaacaacaaaagc-ataacttataaactaattcaactcaactcaa----aaaacaatagaaaattgacacactatggcaatttcccagatcgaaa |
113 |
Q |
| |
|
||||||||| |||||| | ||||||||||||||| |||| ||||||||| ||||||||||||||| || ||||||||||||||||||| |||||| |
|
|
| T |
48020586 |
attatcaactacaaaaaccataacttataaactagttcatttcaactcaattgaaaaacaatagaaaatccactcactatggcaatttcccagctcgaaa |
48020487 |
T |
|
| Q |
114 |
aattgagaatttagaagcaacagagtatgaataatcaatttcattctccttcaaaaactcctccagaatccgtttagcttcttcaggatcagaactctca |
213 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| ||||| ||||| |||||||||||||||||||| ||| |
|
|
| T |
48020486 |
aattgcaaatttagaagcaacagagtatgaataatcaattccattctccttcaagaactcctcaagaatgcgtttggcttcttcaggatcagaactttca |
48020387 |
T |
|
| Q |
214 |
cactcaatctcaaacaaagtcccaaaatcaaaaccagtttcatcaacttccaatttcaaacctttccattcataaacattcctcacattcctaaaatccc |
313 |
Q |
| |
|
|| ||||||||||||||||| |||||||||||| ||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||| | | |
|
|
| T |
48020386 |
cattcaatctcaaacaaagttccaaaatcaaaatgagtctcatccacttccaatttcaaacctttccaatcataaacattcctcacattcttaaaacctc |
48020287 |
T |
|
| Q |
314 |
ctaaacccacaaacccatttttaccaaccacgccaaattcctccttcactctccccataatcctcgaatccacaaaacccaa |
395 |
Q |
| |
|
| ||||||||||||||||||| ||| ||||| ||||||||||||||||| ||||||||||||||||| ||||| || ||||| |
|
|
| T |
48020286 |
ccaaacccacaaacccattttcacccaccaccccaaattcctccttcaccctccccataatcctcgactccaccaaccccaa |
48020205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0182 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: scaffold0182
Description:
Target: scaffold0182; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 17 - 396
Target Start/End: Complemental strand, 14143 - 13764
Alignment:
| Q |
17 |
atattatcaacaacaaaagcataacttataaactaattcaactcaactcaaaaaacaatagaaaattgacacactatggcaatttcccagatcgaaaaat |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14143 |
atattatcaacaacaaaagcataacttataaactaattcaactcaactcaaaaaatgatagaaaattgacacactatggcaatttcccagatcgaaaaat |
14044 |
T |
|
| Q |
117 |
tgagaatttagaagcaacagagtatgaataatcaatttcattctccttcaaaaactcctccagaatccgtttagcttcttcaggatcagaactctcacac |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || |||||| |
|
|
| T |
14043 |
tgagaatttagaagcaacagagtatgaataatcaatttcattctccttcaaaaactcctccagaatctgtttagcttcttcaggatcagagctttcacac |
13944 |
T |
|
| Q |
217 |
tcaatctcaaacaaagtcccaaaatcaaaaccagtttcatcaacttccaatttcaaacctttccattcataaacattcctcacattcctaaaatccccta |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |
|
|
| T |
13943 |
tcaatctcaaacaaagtcccaaaatcaaaaccagtttcatcaacttccaatttcaaacctttccattcataaacattcctcacattcctaaacttcccta |
13844 |
T |
|
| Q |
317 |
aacccacaaacccatttttaccaaccacgccaaattcctccttcactctccccataatcctcgaatccacaaaacccaac |
396 |
Q |
| |
|
| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13843 |
atcccacaaacccatttttacccaccaccccaaattcctccttcactctccccataatcctcgaatccacaaaacccaac |
13764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 17 - 396
Target Start/End: Complemental strand, 51934973 - 51934594
Alignment:
| Q |
17 |
atattatcaacaacaaaagcataacttataaactaattcaactcaactcaaaaaacaatagaaaattgacacactatggcaatttcccagatcgaaaaat |
116 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51934973 |
atattatcaacaacaaaaacataacttataaactaattcaactcaactcaaaaaacgatagaaaattgacacactatggcaatttcccagatcgaaaaat |
51934874 |
T |
|
| Q |
117 |
tgagaatttagaagcaacagagtatgaataatcaatttcattctccttcaaaaactcctccagaatccgtttagcttcttcaggatcagaactctcacac |
216 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51934873 |
tgagaatttagaagcaaaagagtatgaataatcaatatcattctccttcaaaaactcctccagaatccgtttagcttcttcaggatcagaactctcacac |
51934774 |
T |
|
| Q |
217 |
tcaatctcaaacaaagtcccaaaatcaaaaccagtttcatcaacttccaatttcaaacctttccattcataaacattcctcacattcctaaaatccccta |
316 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |
|
|
| T |
51934773 |
tcaatctcaaacaaagtctcaaaatcaaaaccagtttcatcaacttccaatttcaaacctttccattcataaacattcatcacattcctaaaatcctcta |
51934674 |
T |
|
| Q |
317 |
aacccacaaacccatttttaccaaccacgccaaattcctccttcactctccccataatcctcgaatccacaaaacccaac |
396 |
Q |
| |
|
| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51934673 |
atcccacaaacccatttttacccaccaccccaaattcctccttcactctccccataatcctcgaatccacaaaacccaac |
51934594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University