View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10468_low_13 (Length: 400)
Name: NF10468_low_13
Description: NF10468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10468_low_13 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 186; Significance: 1e-100; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 46 - 390
Target Start/End: Complemental strand, 7822001 - 7821665
Alignment:
| Q |
46 |
attcacagcgggaaaagctttgggtttccatcagcagcaccatgcatta-------ataagaagtttcatatttgagaaacaatgcataaagtagctcat |
138 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7822001 |
attcacagcgggaaaagctttgggtttccatcagcagcaccatgcattatattataataagaagtttcatatttgagaaacaatgcataaagtagctcat |
7821902 |
T |
|
| Q |
139 |
tccttgtatcaggtacaccaggaagacaccagtggcttcaatcttggcgatttgtagttgcattaggacccaaataatatttagatagatgtccatcttt |
238 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
7821901 |
tccatgtatcaggtacaccaggaagacaccagtggcttcaatcttggcgatttgaagttgcattaggacccaaataatatttacatagatgtccatcttt |
7821802 |
T |
|
| Q |
239 |
tctc-----tgttacattcaataccttaaaaaccttggaagtgtttttatgtgctaatattgcggaattggcaattttgaactgtaaccaactatcctta |
333 |
Q |
| |
|
|||| ||| | || ||| || || ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
7821801 |
tctctgacttgtcatctttgttacattcaataccttggaagtgtttttgtgtgctaatattgcagaattggcaattttgaactgtaa------------- |
7821715 |
T |
|
| Q |
334 |
ggtactgatgcggacccctgttctggcattgtttccaaatgtcattttccacctttg |
390 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
7821714 |
-------atgcggacccctgttctggcattgtttccaaatgacattttccacctttg |
7821665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 98 - 244
Target Start/End: Complemental strand, 7812411 - 7812265
Alignment:
| Q |
98 |
agaagtttcatatttgagaaacaatgcataaagtagctcattccttgtatcaggtacaccaggaagacaccagtggcttcaatcttggcgatttgtagtt |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| ||||| |||||||| |||| || | || |
|
|
| T |
7812411 |
agaagtttcatatttgagaaacaatgcataaagtagctcattccatgtatcaggtacaccgggaagacaccaatggctacaatcttgacgatgtggattt |
7812312 |
T |
|
| Q |
198 |
gcattaggacccaaataatatttagatagatgtccatcttttctctg |
244 |
Q |
| |
|
||||||| |||||||||||||||||| |||||||||||||||||| |
|
|
| T |
7812311 |
tcattagggcccaaataatatttagatgaatgtccatcttttctctg |
7812265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 271 - 389
Target Start/End: Complemental strand, 7812218 - 7812100
Alignment:
| Q |
271 |
gaagtgtttttatgtgctaatattgcggaattggcaattttgaactgtaaccaactatccttaggtactgatgcggacccctgttctggcattgtttcca |
370 |
Q |
| |
|
||||||||| | ||| ||||||||| ||||||||||||||||||||| |||| |||| |||||||| || |||||| | ||||| | |||||||| |
|
|
| T |
7812218 |
gaagtgtttgtgtgttttaatattgcagaattggcaattttgaactgtgaccagttatctttaggtaccattgaggacccaagctctggtagtgtttcca |
7812119 |
T |
|
| Q |
371 |
aatgtcattttccaccttt |
389 |
Q |
| |
|
|||| || |||||| |||| |
|
|
| T |
7812118 |
aatgacagtttccatcttt |
7812100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 123 - 175
Target Start/End: Complemental strand, 52614699 - 52614647
Alignment:
| Q |
123 |
gcataaagtagctcattccttgtatcaggtacaccaggaagacaccagtggct |
175 |
Q |
| |
|
||||||| ||||||||||| || |||||| || |||||||||||||| ||||| |
|
|
| T |
52614699 |
gcataaattagctcattccatgcatcagggaccccaggaagacaccaatggct |
52614647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University