View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10468_low_15 (Length: 378)
Name: NF10468_low_15
Description: NF10468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10468_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 175; Significance: 4e-94; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 6444638 - 6444851
Alignment:
| Q |
1 |
actaacgattttttgtgtgtatgaaatagactgtagtagtagtttagtttctattactatcatttcttttcgttttcaaactttctaaatctttcatcat |
100 |
Q |
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| T |
6444638 |
actaacgattttgtgtgtgtacgaaatagactgtagtagtaggttaggttctattactatcatttcttttcgttttgaaactttctaaatctttcatcat |
6444737 |
T |
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| Q |
101 |
agtcaacatttcaagcttatctaattggaattcgtgtgcagaagcacaagatcaatttcttgttcacaattttaaaccaaccaattgtggaatttgcatg |
200 |
Q |
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| T |
6444738 |
agtcaacatttcaagcttatctaattggaattggtgtgcagaagcacaa---taatttcttgttcacaattttaaaccaaccaattgtggaatttgcatg |
6444834 |
T |
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| Q |
201 |
tgattatcatatatata |
217 |
Q |
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| T |
6444835 |
tgattatcatatatata |
6444851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 310 - 364
Target Start/End: Original strand, 6444998 - 6445052
Alignment:
| Q |
310 |
aaggaatataaatagagtatttggtggttatctttaagagatggttgcaaaacat |
364 |
Q |
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| T |
6444998 |
aaggaatataaatagagtatttggtggttatctttaagagatggttgcaaaacat |
6445052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 243 - 299
Target Start/End: Original strand, 6444919 - 6444975
Alignment:
| Q |
243 |
gaatatgcacaaccaatttaaactaattttacattgacgttcaatataaatcgagta |
299 |
Q |
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| T |
6444919 |
gaatatgcaaaatcaatttaaactaattttacactgacgttcaatataaatcgagta |
6444975 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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