View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10468_low_19 (Length: 346)
Name: NF10468_low_19
Description: NF10468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10468_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 16 - 201
Target Start/End: Original strand, 43241263 - 43241448
Alignment:
| Q |
16 |
cttatttctcctaaggatgtgcttctatactgggaatacattcattgctgcagcatttccttttatgggtgactttgtaaacttgctaggctcattttca |
115 |
Q |
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| T |
43241263 |
cttatttctcctaaggatgtgcttctatactgggaatacattcattgctgcagcatttccttttatgggtgactttgtaaacttgctaggctcattttca |
43241362 |
T |
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| Q |
116 |
ctagttcctcttaccttcatgttcccaagcatgatcttccttaaggtactatctccgtccataaatataagataagtctctggaac |
201 |
Q |
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| T |
43241363 |
ctagttcctcttaccttcatgttcccaagcatgatctttcttaaggtactatctccgtccataaatataagataagtctctggaac |
43241448 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 237 - 336
Target Start/End: Original strand, 43241481 - 43241580
Alignment:
| Q |
237 |
acgactaatttgtttatacttctgttttaatcgaagataaagggaaaaacggctagaacagagaagaaggtgtggcattggatcaacattgtcgtttcat |
336 |
Q |
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||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43241481 |
acgactaatttgtttatacttttgttttaatcaaagataaagggaaaaactgctagaacagagaagaaggtgtggcattggatcaacattgtcgtttcat |
43241580 |
T |
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