View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10468_low_2 (Length: 571)
Name: NF10468_low_2
Description: NF10468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10468_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 427; Significance: 0; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 17 - 553
Target Start/End: Complemental strand, 17606714 - 17606173
Alignment:
| Q |
17 |
aaaagtaaaattgaaatgggagttcagggaattacattaccacaagtcatgttactggtttcaaacatagaatagaaatcaaaccaaaactaactatcac |
116 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |
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| T |
17606714 |
aaaagtaaaattgaaatgggagttcagggaattacattaccacaagtcatgttactggtttcaaacatagaatagaaatcaaacctaaactaactctcac |
17606615 |
T |
|
| Q |
117 |
gaacttataattaaacttagaaatgtaatattagtatagaatataagcaaatttaattgatatctctatcttaaaccaataatgtgatatgccaatccat |
216 |
Q |
| |
|
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||| ||||||| |
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|
| T |
17606614 |
gaacttataactaaacatagaaatgtaatattagtatagaatataagcaaatttaattgatatcttgatgtttaaccaataatgtgatatgcaaatccat |
17606515 |
T |
|
| Q |
217 |
gtactttgaaaatctataaatatgtcgatacattcaattttaaaaatctagctattctaatctgacttaagactttctaagagtgcacaat--atatttt |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
17606514 |
gtactttgaaaatctataaatatgtcgatacattcaattttaaaaatctagctattctaatctgacttaagactttctaagagtgcacaatatatatttt |
17606415 |
T |
|
| Q |
315 |
aaggaaacgtct----taaaatagtagtattcttgatttcttaaaataaattttagtacctacacactttttgtctactatatcatgaaaacataaataa |
410 |
Q |
| |
|
|||||||||||| |||||||||| |||||||||||| | ||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||| |
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| T |
17606414 |
aaggaaacgtcttaaataaaatagtactattcttgatttgtcaaaataaattttagt-gctacacactttttgtctactatatcaggaaaacatcaataa |
17606316 |
T |
|
| Q |
411 |
ttcctaatatgttgattccatttattaaaatatataaaccaaaataatgctaggcaattccctcaaatttagtacaaaagttatattttttattattcct |
510 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||||||||||||| | |
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| T |
17606315 |
ttcctaatatgttgattccatttattaaaatatataaaccaaattaatgctaggaaattcactcaaatttagtacaaaagttatattttttattattctt |
17606216 |
T |
|
| Q |
511 |
ttcttccatccacgttagcaaacaaaatcatccaaaacaacct |
553 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
17606215 |
ttcttccattcacgttagcaaacaaaatcatccaaaacaacct |
17606173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 46 - 539
Target Start/End: Original strand, 16474353 - 16474836
Alignment:
| Q |
46 |
aattacattaccacaagtcatgttactggtttcaaacatagaatagaaatcaaaccaaaactaactatcacgaacttataattaaacttagaaatgtaat |
145 |
Q |
| |
|
|||||||||||||||||| |||| |||||| ||||| ||||||||||||||||||||| || | |||| ||||||||| |||||| | ||||||||| |
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|
| T |
16474353 |
aattacattaccacaagttgagttattggttttaaacaaagaatagaaatcaaaccaaaaaaaattgtcacaaacttataactaaactcacaaatgtaat |
16474452 |
T |
|
| Q |
146 |
attagtatagaatataagcaaatttaattgatatctctatcttaaaccaataatgtgatatgccaatccatgtactttgaaaatctataaatatgtcgat |
245 |
Q |
| |
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| ||| |||||| ||||| |||||||||||||||||| || || ||||||| |||| | ||||| ||||||||||||| ||||||||||||| | |
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|
| T |
16474453 |
actagaatagaaaataagaaaatttaattgatatctcgattttgaaccaat-----gataggacaatcaatgtactttgaaatcttataaatatgtcggt |
16474547 |
T |
|
| Q |
246 |
acattcaattttaaaaatctagctattctaatctgacttaagactttctaagagtgcacaatatattttaaggaaacgtcttaaaatagtagtattcttg |
345 |
Q |
| |
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| ||||||||| |||||||||||||||| ||| | | ||||||| |||||||||| | |||||| | | |||||| | | | ||||||||| ||||| || |
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|
| T |
16474548 |
agattcaatttgaaaaatctagctattccaatttaatttaagacattctaagagtacccaatatttataaaggaatcttataaaaatagtaatattcctg |
16474647 |
T |
|
| Q |
346 |
atttcttaaaataaattttagtacctacacactttttgtctactatatcatgaaaacataaat-aattcctaatatgttgattccatttattaaaatata |
444 |
Q |
| |
|
||||| |||||| |||||| ||||||||||||||||||| |||| |||||||||||| |||| ||||||||| |||| ||||||| ||||||| |
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|
| T |
16474648 |
atttcataaaatgtattttaatacctacacactttttgtc------atcaggaaaacataaataaattgttaatatgttcattcgatttattcaaatata |
16474741 |
T |
|
| Q |
445 |
taaaccaaaataatgctaggcaattccctcaaatttagtacaaaagttatattttttattattcctttcttccatccacgttagcaaacaaaatc |
539 |
Q |
| |
|
||||| |||| || ||||| |||| | ||||||||| |||||||||||||| ||||| |||||| |||| || | || |||||||||||||||| |
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|
| T |
16474742 |
taaacgaaaagaaggctagtcaatgcactcaaatttggtacaaaagttataattttttttattcttttcctcggttcatgttagcaaacaaaatc |
16474836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 17 - 393
Target Start/End: Complemental strand, 17633199 - 17632824
Alignment:
| Q |
17 |
aaaagtaaaattgaaatgggagttcagggaattacattaccacaagtcatgttactggtttcaaacatagaatagaaatcaaaccaaaactaactatcac |
116 |
Q |
| |
|
|||||||||||||| | ||||| ||||||||||||||||||| | | |||||||||||||||||||| |||||||||||| ||||||||| || ||| |
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|
| T |
17633199 |
aaaagtaaaattgagaggggagctcagggaattacattaccaaaggccatgttactggtttcaaacaaagaatagaaatctaaccaaaacaaatcttcaa |
17633100 |
T |
|
| Q |
117 |
gaacttataattaaacttagaaatgtaatattagtatagaatataagcaaatttaattgatatctctatcttaaaccaataatgtgatatgccaatccat |
216 |
Q |
| |
|
||||||||| |||||| |||||| ||||| ||||||| || ||||||||||||||| |||||||| || || ||||||||||| ||| | || |||| |
|
|
| T |
17633099 |
aaacttataactaaactcagaaatttaatactagtataaaaaataagcaaatttaatcgatatctcaattttgaaccaataatgcaata-ggtaaaccat |
17633001 |
T |
|
| Q |
217 |
gtactttgaaaatctataaatatgtcgatacattcaattttaaaaatctagctattctaatctgacttaagactttctaagagtgcacaatatattttaa |
316 |
Q |
| |
|
| | ||||||||||||||||||||| | || ||||||||| |||||||||| ||||| ||| | | ||||||||||||||| |||||||||||| | || |
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|
| T |
17633000 |
gcattttgaaaatctataaatatgttggtagattcaatttgaaaaatctagatattccaatttaatttaagactttctaagcgtgcacaatatacataaa |
17632901 |
T |
|
| Q |
317 |
ggaaacgtcttaaaatagtagtattcttgatttcttaaaataaattttagtacctacacactttttgtctactatat |
393 |
Q |
| |
|
|||| ||||| ||||||||| || |||| |||| |||||| | | ||||||||| ||||||||||||||||||||| |
|
|
| T |
17632900 |
ggaatcgtctaaaaatagtacaatccttgctttcataaaatgattgttagtacctgcacactttttgtctactatat |
17632824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 17 - 241
Target Start/End: Original strand, 17662933 - 17663157
Alignment:
| Q |
17 |
aaaagtaaaattgaaatgggagttcagggaattacattaccacaagtcatgttactggtttcaaacatagaatagaaatcaaaccaaaactaactatcac |
116 |
Q |
| |
|
|||||||||| | | ||||||||||| ||||||||||| |||||||||||||||| |||| | |||||||| |||||||||| |||||||| | | || |
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|
| T |
17662933 |
aaaagtaaaactaagatgggagttcaaagaattacattatcacaagtcatgttacttgtttgacacatagaacagaaatcaaattaaaactaaatttgac |
17663032 |
T |
|
| Q |
117 |
gaacttataattaaacttagaaatgtaatattagtatagaatataagcaaatttaattgatatctctatcttaaaccaataatgtgatatgccaatccat |
216 |
Q |
| |
|
||||| || | |||| || | |||||||| |||| | |||||||||||||||||||||| || || || |||||||||| | || ||| ||| |
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|
| T |
17663033 |
aaacttctagctgaactcagtatggtaatattgatataacaaataagcaaatttaattgatatcaagatattgaataaataatgtgagaggctaatacat |
17663132 |
T |
|
| Q |
217 |
gtactttgaaaatctataaatatgt |
241 |
Q |
| |
|
||||||||||||||| ||||||||| |
|
|
| T |
17663133 |
gtactttgaaaatctgtaaatatgt |
17663157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 137 - 236
Target Start/End: Complemental strand, 17646680 - 17646581
Alignment:
| Q |
137 |
aaatgtaatattagtatagaatataagcaaatttaattgatatctctatcttaaaccaataatgtgatatgccaatccatgtactttgaaaatctataaa |
236 |
Q |
| |
|
|||||||||||| |||| || |||||||||||||||||||||||| || || |||||||||| | | | |||||| |||||||||| |||||||||||| |
|
|
| T |
17646680 |
aaatgtaatattgatatacaaaataagcaaatttaattgatatctcgatgttgaaccaataatattagaggccaatgcatgtactttcaaaatctataaa |
17646581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 472 - 547
Target Start/End: Complemental strand, 17632745 - 17632670
Alignment:
| Q |
472 |
ctcaaatttagtacaaaagttatattttttattattcctttcttccatccacgttagcaaacaaaatcatccaaaa |
547 |
Q |
| |
|
||||||||| ||||||||||||| ||||| |||||| |||| | || || |||||||||||||||||||||||| |
|
|
| T |
17632745 |
ctcaaatttgctacaaaagttataatttttcttattcttttccacaattcatgttagcaaacaaaatcatccaaaa |
17632670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 379 - 448
Target Start/End: Complemental strand, 17646422 - 17646353
Alignment:
| Q |
379 |
ttttgtctactatatcatgaaaacataaataattcctaatatgttgattccatttatt-aaaatatataaa |
448 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| ||| | |||||||||||| |||||| ||||| |
|
|
| T |
17646422 |
ttttgtctgatatatcatgaaaacataaataattcctaaaatg-tcattccatttattgaaaatacataaa |
17646353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 101 - 239
Target Start/End: Original strand, 17674636 - 17674774
Alignment:
| Q |
101 |
caaaactaactatcacgaacttataattaaacttagaaatgtaatattagtatagaatataagcaaatttaattgatatctctatcttaaaccaataatg |
200 |
Q |
| |
|
||||||||| | | || |||||||| |||||||| | ||||||||| |||||| | ||||| ||||||||||||||| || || ||| ||||||| |
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|
| T |
17674636 |
caaaactaaatttgacaaacttatagctaaacttattattgtaatattggtataggaaataagaaaatttaattgatattaagatattgaacaaataatg |
17674735 |
T |
|
| Q |
201 |
tgatatgccaatccatgtactttgaaaatctataaatat |
239 |
Q |
| |
|
||| | || ||| || ||||||| ||||||||||||||| |
|
|
| T |
17674736 |
tgagacgctaattcacgtacttttaaaatctataaatat |
17674774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 72 - 108
Target Start/End: Complemental strand, 17646724 - 17646688
Alignment:
| Q |
72 |
tggtttcaaacatagaatagaaatcaaaccaaaacta |
108 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
17646724 |
tggtttcaaacatagaatataaatcaaaccaaaacta |
17646688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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