View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10468_low_21 (Length: 340)
Name: NF10468_low_21
Description: NF10468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10468_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 17 - 329
Target Start/End: Original strand, 46080598 - 46080909
Alignment:
| Q |
17 |
agaagaataagtagaattaatattgggtatgcatgagagtgatctttaacataatcatgcttattcttgtgctgattataatttataattacatcatgcg |
116 |
Q |
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| T |
46080598 |
agaagaataagtagaattaatattgggtatgcatgagagtgatctttaacataatcatgcttattcttgtggtggttataatttataattacatcacgcg |
46080697 |
T |
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| Q |
117 |
gcttttgctaattaagtgaacgattttcttgttaatatgacgagttacatttgtggtttgatggttttcttcttcttcttctaagttacccgtcaatgaa |
216 |
Q |
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| T |
46080698 |
gcttttgctaattaagtgaacgattttcttgttaacatgacgagttacatttgtggtttcatggttttttttttcttcttctaagttacccgttaatgaa |
46080797 |
T |
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| Q |
217 |
taggggtgatttatctatctctttcnnnnnnnnnntctcattttcttgatttttattcttacaatcgattaccctttttatcttaaaaacatcaaattct |
316 |
Q |
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| T |
46080798 |
tagggatgatttatctatctctttc-aaagaaaaatctcattttcttcatttttattctcagaatcgattaccatttttatcttaagaacatcaaattct |
46080896 |
T |
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| Q |
317 |
tcatctctttcat |
329 |
Q |
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| T |
46080897 |
tcatctctttcat |
46080909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 312
Target Start/End: Original strand, 35956981 - 35957026
Alignment:
| Q |
267 |
ttttattcttacaatcgattaccctttttatcttaaaaacatcaaa |
312 |
Q |
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| T |
35956981 |
ttttattcttacaattaattaccatttttatctcaaaaacatcaaa |
35957026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 315
Target Start/End: Original strand, 43208734 - 43208792
Alignment:
| Q |
257 |
ttttcttgatttttattcttacaatcgattaccctttttatcttaaaaacatcaaattc |
315 |
Q |
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| T |
43208734 |
ttttcttcatctttattcttacaatcaattaccatttttattttaagaatatcaaattc |
43208792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 314
Target Start/End: Complemental strand, 17736970 - 17736929
Alignment:
| Q |
273 |
tcttacaatcgattaccctttttatcttaaaaacatcaaatt |
314 |
Q |
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| T |
17736970 |
tcttacaatcgattaccatttttatcttaagaatatcaaatt |
17736929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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