View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10468_low_23 (Length: 329)
Name: NF10468_low_23
Description: NF10468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10468_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 145 - 224
Target Start/End: Complemental strand, 49171615 - 49171536
Alignment:
| Q |
145 |
catgccacttaaaataagctcaaaaggtcaagttcatgttaaaacaaactcaaaaggtcaaaattgaaccattagcttcc |
224 |
Q |
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| T |
49171615 |
catgccacttaaaataagctcaataggtcaatttcatgttaaaacaaactcaaaaggtcaaaattgaaccattagcttcc |
49171536 |
T |
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Target: chr3; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 264 - 311
Target Start/End: Complemental strand, 49171496 - 49171449
Alignment:
| Q |
264 |
catcattctactttggacttatttttagtcattcatgcatagtaatac |
311 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
49171496 |
catcattctactttggacttatttttagtcattcatggatagtaatac |
49171449 |
T |
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