View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10468_low_25 (Length: 324)
Name: NF10468_low_25
Description: NF10468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10468_low_25 |
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Alignment Details
Target: chr6 (Bit Score: 255; Significance: 1e-142; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 15 - 309
Target Start/End: Original strand, 17155790 - 17156089
Alignment:
| Q |
15 |
agcacagatggaatttgaagtgtttgtgaggtattgaaacaaataacacaaagccactggaagtgctatcttccatatcttcactgtctcactccacaaa |
114 |
Q |
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| T |
17155790 |
agcatagatggaagttgaagtgtttgtgaggtattgaaacaaataacacaaagccactggaagtgctatcttccatatcttcactgtctcactccacaaa |
17155889 |
T |
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| Q |
115 |
acatgtttaacatccttcaaacttttcactgccaagtaatcattttctgaagtaaatcttttggttagcaatggtgtttccatattgatatag-ctaata |
213 |
Q |
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| T |
17155890 |
acatgtttaacatccttcaaacttttcactgccaagtaatcattttctgaagtaaatcttttggtcagcaatggtgtttccatattgatatagactaata |
17155989 |
T |
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| Q |
214 |
c----tcctactcaatggtgtgttatttatacagataagattagtagtactattgcgtaagaatttgtgtttagggaaatgtaattgcatggtctttatt |
309 |
Q |
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| T |
17155990 |
ctccttcctactcaatggtgtattatttatacagataagattagtagtactattgcgtaggaatttgtgtttagggaaatgtaattgcatggtctttatt |
17156089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 29 - 199
Target Start/End: Original strand, 17143633 - 17143803
Alignment:
| Q |
29 |
ttgaagtgtttgtgaggtattgaaacaaataacacaaagccactggaagtgctatcttccatatcttcactgtctcactccacaaaacatgtttaacatc |
128 |
Q |
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| T |
17143633 |
ttgaagagtttgtgaggaactgaaacagtgaacacaaggccactggaagtgctatcttccatatcttcactgtctcactccacaaaacatgtttaacatc |
17143732 |
T |
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| Q |
129 |
cttcaaacttttcactgccaagtaatcattttctgaagtaaatcttttggttagcaatggtgtttccatat |
199 |
Q |
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| T |
17143733 |
cttcaaacttttcactgccaagtaatcattttctgaagtaaagcttttgattaacaatggtgtttccatat |
17143803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 62 - 199
Target Start/End: Original strand, 17170332 - 17170469
Alignment:
| Q |
62 |
acaaagccactggaagtgctatcttccatatcttcactgtctcactccacaaaacatgtttaacatccttcaaacttttcactgccaagtaatcattttc |
161 |
Q |
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||||||||||||||| |||||||||||||||||||| ||||||| |||||||||||| ||| ||||| ||||| |||||| | |||||||||||||| |
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| T |
17170332 |
acaaagccactggaattgctatcttccatatcttcaatgtctcattccacaaaacatatttcacatctttcaagtttttcaaaggtaagtaatcattttc |
17170431 |
T |
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| Q |
162 |
tgaagtaaatcttttggttagcaatggtgtttccatat |
199 |
Q |
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| T |
17170432 |
tgaagtaaagcttttaatcaacaatggtgtttccatat |
17170469 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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