View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10468_low_26 (Length: 317)
Name: NF10468_low_26
Description: NF10468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10468_low_26 |
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Alignment Details
Target: chr2 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 33 - 304
Target Start/End: Complemental strand, 3434092 - 3433821
Alignment:
| Q |
33 |
aaaccatggcatctatctcacctatttcctttatatccacaatcaacttttcccattcttcctccatgtatccattttcacaaaaacaacagaaatcttc |
132 |
Q |
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| T |
3434092 |
aaaccatggcatctatctcacctatttcctttatatccacaatcaacttttcccattcttcttccatgtatccattttcacaaaaacaacagaaatcttc |
3433993 |
T |
|
| Q |
133 |
taaacatagaatattaccaagacgccaagtgatcacattgagtggtaataatagtaaccaaaacaaccctaaagaagaagaacaactacaaaacattgtt |
232 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3433992 |
taaacatagaatattaccaagacgccaagtgatcacattgagtggtaataatggtaaccaaaacaaccctaaagaagaagaacaactacaaaacattgtt |
3433893 |
T |
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| Q |
233 |
gtaggaaataggaggaatgttctaattggccttggaggactttgtggtactttcaccactaacccttttgcc |
304 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
3433892 |
gtaggaaataggaggaatgttctagttggccttggaggactttgtggtactttcaccgctaacccttttgcc |
3433821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 101 - 304
Target Start/End: Complemental strand, 3427833 - 3427630
Alignment:
| Q |
101 |
tatccattttcacaaaaacaacagaaatcttctaaacatagaatattaccaagacgccaagtgatcacattgagtggtaataatagtaaccaaaacaacc |
200 |
Q |
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||||||||||||||||||||||| |||| ||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3427833 |
tatccattttcacaaaaacaacaaaaatattctagacatagaaaattatcaagacgccaagtgatcacattgagtggtaataatagtaaccaaaacaacc |
3427734 |
T |
|
| Q |
201 |
ctaaagaagaagaacaactacaaaacattgttgtaggaaataggaggaatgttctaattggccttggaggactttgtggtactttcaccactaacccttt |
300 |
Q |
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| T |
3427733 |
ctaaagaggaacaagaaccacaaaacattgttgtaggaaataggaggaatgttctaattggccttggaggactttgtggtactttcaccactaacccttt |
3427634 |
T |
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| Q |
301 |
tgcc |
304 |
Q |
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|||| |
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| T |
3427633 |
tgcc |
3427630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 33 - 304
Target Start/End: Original strand, 11896381 - 11896652
Alignment:
| Q |
33 |
aaaccatggcatctatctcacctatttcctttatatccacaatcaacttttcccattcttcctccatgtatccattttcacaaaaacaacagaaatcttc |
132 |
Q |
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|
||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||| |||||||||| |||||||||||||||||| |||||||| |
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| T |
11896381 |
aaaccatggcatctatctcacctctttccattatatccacaatcaaaatttcccattcttcttccatgtatcaattttcacaaaaacaacaaaaatcttc |
11896480 |
T |
|
| Q |
133 |
taaacatagaatattaccaagacgccaagtgatcacattgagtggtaataatagtaaccaaaacaaccctaaagaagaagaacaactacaaaacattgtt |
232 |
Q |
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||||||||||| ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| || ||||||||||||||||| |
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| T |
11896481 |
taaacatagaaaattaccaagacgccaagtgatcacattcagtggtaatattagtaaccaaaacaaccctaaagaagaacaagaactacaaaacattgtt |
11896580 |
T |
|
| Q |
233 |
gtaggaaataggaggaatgttctaattggccttggaggactttgtggtactttcaccactaacccttttgcc |
304 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11896581 |
gtaggaaataggagaaatgttctaattggccttggaggactttgtggtactttcaccactaacccttttgcc |
11896652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 33 - 304
Target Start/End: Original strand, 11911681 - 11911952
Alignment:
| Q |
33 |
aaaccatggcatctatctcacctatttcctttatatccacaatcaacttttcccattcttcctccatgtatccattttcacaaaaacaacagaaatcttc |
132 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||| |||||||||| |||||||||||||||||| |||||||| |
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| T |
11911681 |
aaaccatggcatctatctcacctctttccattatatccacaatcaaaatttcccattcttcttccatgtatcaattttcacaaaaacaacaaaaatcttc |
11911780 |
T |
|
| Q |
133 |
taaacatagaatattaccaagacgccaagtgatcacattgagtggtaataatagtaaccaaaacaaccctaaagaagaagaacaactacaaaacattgtt |
232 |
Q |
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||||||||||| ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| || ||||||||||||||||| |
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| T |
11911781 |
taaacatagaaaattaccaagacgccaagtgatcacattcagtggtaatattagtaaccaaaacaaccctaaagaagaacaagaactacaaaacattgtt |
11911880 |
T |
|
| Q |
233 |
gtaggaaataggaggaatgttctaattggccttggaggactttgtggtactttcaccactaacccttttgcc |
304 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11911881 |
gtaggaaataggagaaatgttctaattggccttggaggactttgtggtactttcaccactaacccttttgcc |
11911952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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