View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10468_low_3 (Length: 493)
Name: NF10468_low_3
Description: NF10468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10468_low_3 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 120; Significance: 3e-61; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 363 - 493
Target Start/End: Original strand, 6444574 - 6444705
Alignment:
| Q |
363 |
ccactctgcttcattatattgctgttgagtt-acaccttctcttccctttatgtctgctgtcccactaacgattttgtgtgtgtacgaaatagactgtag |
461 |
Q |
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| T |
6444574 |
ccactctgcttcattatattgctgttgagtttacaccttctcttccctttatgtctgctgtcccactaacgattttgtgtgtgtacgaaatagactgtag |
6444673 |
T |
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| Q |
462 |
tagtaggttaggttctattactataatttctt |
493 |
Q |
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| T |
6444674 |
tagtaggttaggttctattactatcatttctt |
6444705 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 213 - 357
Target Start/End: Original strand, 6444363 - 6444515
Alignment:
| Q |
213 |
tagttcttctgtgtgaaaccagtttgcactgcaatgtccactgtgacatttccaacaaacaaacactgatcgtaggcacatgat----tttctacttaga |
308 |
Q |
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| T |
6444363 |
tagttcttgtgtgtgaaaccagtttgcactgcaatgtccactgtgacatttccaacaaacaaacactgatcgtatgcacatgattttctttctacttaga |
6444462 |
T |
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| Q |
309 |
gagtggtcctgtccttttt----cacacccatgtagtccttgcaatgttccat |
357 |
Q |
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| T |
6444463 |
gagtggtcctgtcctttgtcacacacacacatgtagtccttgcaatgttccat |
6444515 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 80 - 185
Target Start/End: Original strand, 6444259 - 6444349
Alignment:
| Q |
80 |
taatcttagattatttttcacctcctacttggtggcggggcctgaatgaatgggttgagaagaacaggaaaatattattttagtggtcacgcaacatgat |
179 |
Q |
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| T |
6444259 |
taatcttagattatttttcacctcctacttggtggcggg---------------ttgagaagaacaggaaaatattattttagtggtcacgcaacatgat |
6444343 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 69 - 164
Target Start/End: Complemental strand, 29731343 - 29731252
Alignment:
| Q |
69 |
cataacacaactaatcttagattatttttcacctcctacttggtggcggggcctgaatgaatgggttgagaagaacaggaaaatattattttagtg |
164 |
Q |
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| T |
29731343 |
cataacacaattaatcatggattatttctcacctcctccttggtggcggggcctg----aatgggttgagaagaacagaaaaatattattttagtg |
29731252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 71 - 168
Target Start/End: Original strand, 6653707 - 6653800
Alignment:
| Q |
71 |
taacacaactaatcttagattatttttcacctcctacttggtggcggggcctgaatgaatgggttgagaagaacaggaaaatattattttagtggtca |
168 |
Q |
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| T |
6653707 |
taacacaattaatcatggattatttttcacctcctccttagtggcggggcc----tgaatgggttgagaagaactgaaaaatattattttaatggtca |
6653800 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 71 - 168
Target Start/End: Original strand, 6734107 - 6734200
Alignment:
| Q |
71 |
taacacaactaatcttagattatttttcacctcctacttggtggcggggcctgaatgaatgggttgagaagaacaggaaaatattattttagtggtca |
168 |
Q |
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| T |
6734107 |
taacacaattaatcatggattatttttcacctcctcctttgtggcggggcc----tgaatgggttgagaagaactgaaaaatattattttaatggtca |
6734200 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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