View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10468_low_30 (Length: 298)

Name: NF10468_low_30
Description: NF10468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10468_low_30
NF10468_low_30
[»] chr2 (2 HSPs)
chr2 (34-279)||(12335800-12336045)
chr2 (118-279)||(604160-604321)
[»] chr5 (2 HSPs)
chr5 (34-279)||(7955168-7955413)
chr5 (34-184)||(1592661-1592810)
[»] chr8 (4 HSPs)
chr8 (41-279)||(15362482-15362719)
chr8 (34-279)||(18166361-18166606)
chr8 (48-279)||(20266219-20266450)
chr8 (48-279)||(21052848-21053079)
[»] chr7 (2 HSPs)
chr7 (34-279)||(21868019-21868264)
chr7 (90-279)||(47023003-47023191)
[»] chr4 (5 HSPs)
chr4 (34-279)||(27366216-27366461)
chr4 (34-279)||(30200561-30200806)
chr4 (34-279)||(48944797-48945050)
chr4 (142-279)||(45113227-45113364)
chr4 (236-279)||(1838749-1838792)
[»] chr1 (2 HSPs)
chr1 (34-279)||(34024823-34025068)
chr1 (111-279)||(34917416-34917584)
[»] chr3 (2 HSPs)
chr3 (34-279)||(34147490-34147741)
chr3 (59-136)||(28983852-28983929)
[»] chr6 (1 HSPs)
chr6 (231-279)||(28888171-28888219)


Alignment Details
Target: chr2 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 34 - 279
Target Start/End: Complemental strand, 12336045 - 12335800
Alignment:
Q  34 agcagagaggggtttatatatatgtgggtttctattaatttagaaaacgcgtgggaaaaattaggagggaataagcgcgggtaaaataggggtatgggtg 133  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  12336045 agcaaagaggggtttatatatatgtgggtttctattaatttagaaaacgcgtgggaaaaattaggagggaagaagcgcgggtaaaataggggtatgggtg 12335946  T
Q  134 ggttttcgccatgaatgtggagatttcatttccagggattgaagattccagnnnnnnnnnnnngggaataaaaatagagagtcaacaggtaaataagatt 233  Q
    |||||||||||||||||||||||||||||| ||||| ||||||||||||||            ||||||||||||||||||||||| |||||||||||||    
T  12335945 ggttttcgccatgaatgtggagatttcattcccaggaattgaagattccagccccccacccccgggaataaaaatagagagtcaacgggtaaataagatt 12335846  T
Q  234 cctgggaatcatttattcctgggtatattatttttgttccattcta 279  Q
    |||||||||||||||||||||||||||||||||||||||| |||||    
T  12335845 cctgggaatcatttattcctgggtatattatttttgttcccttcta 12335800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 118 - 279
Target Start/End: Original strand, 604160 - 604321
Alignment:
Q  118 aataggggtatgggtgggttttcgccatgaatgtggagatttcatttccagggattgaagattccagnnnnnnnnnnnngggaataaaaatagagagtca 217  Q
    ||||| ||||||||||||||||| |||||||||||||||||||||| ||||| |||||||||||||             |  ||||||||||||||||||    
T  604160 aatagaggtatgggtgggttttcaccatgaatgtggagatttcattcccaggaattgaagattccaaccccccacccccgaaaataaaaatagagagtca 604259  T
Q  218 acaggtaaataagattcctgggaatcatttattcctgggtatattatttttgttccattcta 279  Q
    ||||||||||||||||||||  ||||||||||||||| |||||||||||||||||| |||||    
T  604260 acaggtaaataagattcctgaaaatcatttattcctgagtatattatttttgttcccttcta 604321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 34 - 279
Target Start/End: Complemental strand, 7955413 - 7955168
Alignment:
Q  34 agcagagaggggtttatatatatgtgggtttctattaatttagaaaacgcgtgggaaaaattaggagggaataagcgcgggtaaaataggggtatgggtg 133  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  7955413 agcaaagaggggtttatatatatgtgggtttctattaatttagaaaacgcgtgggaaaaattaggagggaagaagcgtgggtaaaataggggtatgggtg 7955314  T
Q  134 ggttttcgccatgaatgtggagatttcatttccagggattgaagattccagnnnnnnnnnnnngggaataaaaatagagagtcaacaggtaaataagatt 233  Q
    |||||||| |||||||||||||||||||||  |||| ||||||||||||||            ||||||||||||||||||||||| |||||||||||||    
T  7955313 ggttttcgtcatgaatgtggagatttcattctcaggaattgaagattccagccccccacccccgggaataaaaatagagagtcaacgggtaaataagatt 7955214  T
Q  234 cctgggaatcatttattcctgggtatattatttttgttccattcta 279  Q
    |||||||||||||||||||||||||||||||||||||||| |||||    
T  7955213 cctgggaatcatttattcctgggtatattatttttgttcccttcta 7955168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 34 - 184
Target Start/End: Complemental strand, 1592810 - 1592661
Alignment:
Q  34 agcagagaggggtttatatatatgtgggtttctattaatttagaaaacgcgtgggaaaaattaggagggaataagcgcgggtaaaataggggtatgggtg 133  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||    
T  1592810 agcaaagaggggtttatatatatgtgggtttctattaatttagaaaacgcgtgggaaaaatgaggagggaagaagcgcgagtaaaataggggtatgggtg 1592711  T
Q  134 ggttttcgccatgaatgtggagatttcatttccagggattgaagattccag 184  Q
    | |||||||||||||||||||||||||| |||| || ||||||||||||||    
T  1592710 gattttcgccatgaatgtggagatttca-ttcccggaattgaagattccag 1592661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 171; Significance: 7e-92; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 41 - 279
Target Start/End: Complemental strand, 15362719 - 15362482
Alignment:
Q  41 aggggtttatatatatgtgggtttctattaatttagaaaacgcgtgggaaaaattaggagggaataagcgcgggtaaaataggggtatgggtgggttttc 140  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  15362719 aggggtttatatatatgtgggtttctattaatttagaaaacgcgtgggaaaaattaggagggaagaagcgcgggtaaaataggggtatgggtgggttttc 15362620  T
Q  141 gccatgaatgtggagatttcatttccagggattgaagattccagnnnnnnnnnnnngggaataaaaatagagagtcaacaggtaaataagattcctggga 240  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||             |||||||||||||||||||||| | ||||||||||||||||||    
T  15362619 gccatgaatgtggagatttcattcccaggaattgaagattccagccccccacccct-ggaataaaaatagagagtcaacggataaataagattcctggga 15362521  T
Q  241 atcatttattcctgggtatattatttttgttccattcta 279  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  15362520 atcatttattcctgggtatattatttttgttcccttcta 15362482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 34 - 279
Target Start/End: Complemental strand, 18166606 - 18166361
Alignment:
Q  34 agcagagaggggtttatatatatgtgggtttctattaatttagaaaacgcgtgggaaaaattaggagggaataagcgcgggtaaaataggggtatgggtg 133  Q
    |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||    
T  18166606 agcaaagaggggtttatatatacgtgggtttctattaatttagaaaacgcgtgggaaaaattaggagggaagaagcgcgggtaaaatagcggtatgggtg 18166507  T
Q  134 ggttttcgccatgaatgtggagatttcatttccagggattgaagattccagnnnnnnnnnnnngggaataaaaatagagagtcaacaggtaaataagatt 233  Q
    |||||||||||||||||||||||||||||| ||||| ||||||||||||||            | ||||||||||||||||||||| |||||||||||||    
T  18166506 ggttttcgccatgaatgtggagatttcattcccaggaattgaagattccagcccaccacccccgagaataaaaatagagagtcaacgggtaaataagatt 18166407  T
Q  234 cctgggaatcatttattcctgggtatattatttttgttccattcta 279  Q
    |||| ||||||||||||| ||||||||||||||||||||| |||||    
T  18166406 cctgtgaatcatttattcttgggtatattatttttgttcccttcta 18166361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 48 - 279
Target Start/End: Complemental strand, 20266450 - 20266219
Alignment:
Q  48 tatatatatgtgggtttctattaatttagaaaacgcgtgggaaaaattaggagggaataagcgcgggtaaaataggggtatgggtgggttttcgccatga 147  Q
    ||||||||| || ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||    
T  20266450 tatatatatatgagtttctattaatttagaaaacgcatgggaaaaattaggagggaagaagcgcgggtaaaataggggtatgggtgggttttcaccatga 20266351  T
Q  148 atgtggagatttcatttccagggattgaagattccagnnnnnnnnnnnngggaataaaaatagagagtcaacaggtaaataagattcctgggaatcattt 247  Q
    ||||||||||||||||  |||| ||||||||||||||            ||||||||||||||||||||||| |||||||||||||||||||||||| ||    
T  20266350 atgtggagatttcattctcaggaattgaagattccagccccccaccctcgggaataaaaatagagagtcaacgggtaaataagattcctgggaatcaatt 20266251  T
Q  248 attcctgggtatattatttttgttccattcta 279  Q
    |||||||||||||||||||||||||| |||||    
T  20266250 attcctgggtatattatttttgttcccttcta 20266219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 48 - 279
Target Start/End: Complemental strand, 21053079 - 21052848
Alignment:
Q  48 tatatatatgtgggtttctattaatttagaaaacgcgtgggaaaaattaggagggaataagcgcgggtaaaataggggtatgggtgggttttcgccatga 147  Q
    ||||||||| || ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||    
T  21053079 tatatatatatgagtttctattaatttagaaaacgcatgggaaaaattaggagggaagaagcgcgggtaaaataggggtatgggtgggttttcaccatga 21052980  T
Q  148 atgtggagatttcatttccagggattgaagattccagnnnnnnnnnnnngggaataaaaatagagagtcaacaggtaaataagattcctgggaatcattt 247  Q
    ||||||||||||||||  |||| ||||||||||||||            ||||||||||||||||||||||| |||||||||||||||||||||||| ||    
T  21052979 atgtggagatttcattctcaggaattgaagattccagccccccaccctcgggaataaaaatagagagtcaacgggtaaataagattcctgggaatcaatt 21052880  T
Q  248 attcctgggtatattatttttgttccattcta 279  Q
    |||||||||||||||||||||||||| |||||    
T  21052879 attcctgggtatattatttttgttcccttcta 21052848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 170; Significance: 3e-91; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 34 - 279
Target Start/End: Original strand, 21868019 - 21868264
Alignment:
Q  34 agcagagaggggtttatatatatgtgggtttctattaatttagaaaacgcgtgggaaaaattaggagggaataagcgcgggtaaaataggggtatgggtg 133  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  21868019 agcaaagaggggtttatatatatgtgggtttctattaatttagaaaacgcatgggaaaaattaggagggaagaagcgcgggtaaaataggggtatgggtg 21868118  T
Q  134 ggttttcgccatgaatgtggagatttcatttccagggattgaagattccagnnnnnnnnnnnngggaataaaaatagagagtcaacaggtaaataagatt 233  Q
     ||||||||||||||||||||||||||||| ||||| ||||||||||||||            ||||||||||||||||||||||| |||||||||||||    
T  21868119 agttttcgccatgaatgtggagatttcattcccaggaattgaagattccagcccaccacccccgggaataaaaatagagagtcaacgggtaaataagatt 21868218  T
Q  234 cctgggaatcatttattcctgggtatattatttttgttccattcta 279  Q
    ||| |||||||||||||||| ||||||||||||||||||| |||||    
T  21868219 cctaggaatcatttattcctaggtatattatttttgttcccttcta 21868264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 90 - 279
Target Start/End: Complemental strand, 47023191 - 47023003
Alignment:
Q  90 aaaattaggagggaataagcgcgggtaaaataggggtatgggtgggttttcgccatgaatgtggagatttcatttccagggattgaagattccagnnnnn 189  Q
    ||||||||||||||| ||||||||||||||||| ||||||||||||||||   |||||||||| |||||||||||||||| ||||||||||||||         
T  47023191 aaaattaggagggaagaagcgcgggtaaaatagaggtatgggtgggtttttagcatgaatgtgaagatttcatttccaggaattgaagattccag-cccc 47023093  T
Q  190 nnnnnnngggaataaaaatagagagtcaacaggtaaataagattcctgggaatca-tttattcctgggtatattatttttgttccattcta 279  Q
           | ||||||||||||||||||||| | | ||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||    
T  47023092 cacccccgagaataaaaatagagagtcaacggattaataagatt-ctgggaatcattttattcctgggtatattatttttgttcccttcta 47023003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 170; Significance: 3e-91; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 34 - 279
Target Start/End: Original strand, 27366216 - 27366461
Alignment:
Q  34 agcagagaggggtttatatatatgtgggtttctattaatttagaaaacgcgtgggaaaaattaggagggaataagcgcgggtaaaataggggtatgggtg 133  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  27366216 agcaaagaggggtttatatatatgtgggtttctattaatttagaaaacgcatgggaaaaattaggagggaagaagcgcgggtaaaataggggtatgggtg 27366315  T
Q  134 ggttttcgccatgaatgtggagatttcatttccagggattgaagattccagnnnnnnnnnnnngggaataaaaatagagagtcaacaggtaaataagatt 233  Q
    ||||||| |||||||||||||||||||||| ||||| ||||||||||||||            ||||||||||||||||||||||| |||||||||||||    
T  27366316 ggttttcaccatgaatgtggagatttcattcccaggaattgaagattccagccccccacccccgggaataaaaatagagagtcaacgggtaaataagatt 27366415  T
Q  234 cctgggaatcatttattcctgggtatattatttttgttccattcta 279  Q
    ||||  |||||||||||||||||||||||||||||||||| |||||    
T  27366416 cctgaaaatcatttattcctgggtatattatttttgttcccttcta 27366461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 34 - 279
Target Start/End: Original strand, 30200561 - 30200806
Alignment:
Q  34 agcagagaggggtttatatatatgtgggtttctattaatttagaaaacgcgtgggaaaaattaggagggaataagcgcgggtaaaataggggtatgggtg 133  Q
    |||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| ||||||||||||| |||||||    
T  30200561 agcaaagaggggtttaaatatatgtgggtttctattaatttagaaaacgtgtgggaaaaattaggagggaagaagcgcaggtaaaataggggcatgggtg 30200660  T
Q  134 ggttttcgccatgaatgtggagatttcatttccagggattgaagattccagnnnnnnnnnnnngggaataaaaatagagagtcaacaggtaaataagatt 233  Q
    |||||||||||||||||||||||||||||| ||||| |||||||||||||             | ||||||||||||||||||||| |||||||||||||    
T  30200661 ggttttcgccatgaatgtggagatttcattcccaggaattgaagattccatccccccacccccgagaataaaaatagagagtcaacgggtaaataagatt 30200760  T
Q  234 cctgggaatcatttattcctgggtatattatttttgttccattcta 279  Q
    |||| |||||||||||||||| |||||||||||||||||| |||||    
T  30200761 cctgagaatcatttattcctgagtatattatttttgttcccttcta 30200806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 34 - 279
Target Start/End: Original strand, 48944797 - 48945050
Alignment:
Q  34 agcagagaggggtttatatat--atgtgggtttctattaatttagaaaacgcgtgggaaaaattaggagggaataagcgcgggtaaaataggggtatggg 131  Q
    |||| ||||||||||||||||  |||||||||||||||||||| ||||| | ||||||||||||||||||||| ||| | ||||||||||||| ||||||    
T  48944797 agcaaagaggggtttatatatgtatgtgggtttctattaatttggaaaatgagtgggaaaaattaggagggaaaaagtg-gggtaaaatagggatatggg 48944895  T
Q  132 tgggttttcg-------ccatgaatgtggagatttcatttccagggattgaagattccagnnnnnnnnnnnngggaataaaaatagagagtcaacaggta 224  Q
    |||||||||        |||| ||||||||||||||||||||||| ||||||||||||||             |||||||||||||||||||||  |||     
T  48944896 tgggttttcaattttcaccataaatgtggagatttcatttccaggaattgaagattccagccccccaacccaaggaataaaaatagagagtcaatgggtt 48944995  T
Q  225 aataagattcctgggaatcatttattcctgggtatattatttttgttccattcta 279  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  48944996 aataagattcctgggaatcatttattcctgggtatattatttttgttcccttcta 48945050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 142 - 279
Target Start/End: Original strand, 45113227 - 45113364
Alignment:
Q  142 ccatgaatgtggagatttcatttccagggattgaagattccagnnnnnnnnnnnngggaataaaaatagagagtcaacaggtaaataagattcctgggaa 241  Q
    |||||||||||||||||||||| ||||| ||||||||||||||            ||||||||||||||||||||||| |||||||||||||||||| ||    
T  45113227 ccatgaatgtggagatttcattcccaggaattgaagattccagccccccacctccgggaataaaaatagagagtcaacgggtaaataagattcctggaaa 45113326  T
Q  242 tcatttattcctgggtatattatttttgttccattcta 279  Q
    |||||||||||||||||||||||||||||||| |||||    
T  45113327 tcatttattcctgggtatattatttttgttcccttcta 45113364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 236 - 279
Target Start/End: Original strand, 1838749 - 1838792
Alignment:
Q  236 tgggaatcatttattcctgggtatattatttttgttccattcta 279  Q
    |||||||||||||||||||||||||||||||||||||| |||||    
T  1838749 tgggaatcatttattcctgggtatattatttttgttcccttcta 1838792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 162; Significance: 2e-86; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 34 - 279
Target Start/End: Complemental strand, 34025068 - 34024823
Alignment:
Q  34 agcagagaggggtttatatatatgtgggtttctattaatttagaaaacgcgtgggaaaaattaggagggaataagcgcgggtaaaataggggtatgggtg 133  Q
    |||| ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||    
T  34025068 agcaaagaggggtttatatatacgtgggtttctattaatttagaaaacgcatgggaaaaattaggagggaagaagcgcgagtaaaataggggtatgggtg 34024969  T
Q  134 ggttttcgccatgaatgtggagatttcatttccagggattgaagattccagnnnnnnnnnnnngggaataaaaatagagagtcaacaggtaaataagatt 233  Q
    |||||||||||||||||||||||||||||| ||||| ||||||||||||||            | ||||||||||||||||||||| |||||||||||||    
T  34024968 ggttttcgccatgaatgtggagatttcattcccaggaattgaagattccagcccaccacccccgagaataaaaatagagagtcaacgggtaaataagatt 34024869  T
Q  234 cctgggaatcatttattcctgggtatattatttttgttccattcta 279  Q
    |||| |||||||||||||||| |||||||||||||||||| |||||    
T  34024868 cctgagaatcatttattcctgagtatattatttttgttcccttcta 34024823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 111 - 279
Target Start/End: Complemental strand, 34917584 - 34917416
Alignment:
Q  111 cgggtaaaataggggtatgggtgggttttcgccatgaatgtggagatttcatttccagggattgaagattccagnnnnnnnnnnnngggaataaaaatag 210  Q
    |||||||||||||||||||||||| ||||| |||||||||||||||||||||| ||||| ||||||||||||||            ||||||||||||||    
T  34917584 cgggtaaaataggggtatgggtggattttcaccatgaatgtggagatttcattcccaggaattgaagattccagccccccacccccgggaataaaaatag 34917485  T
Q  211 agagtcaacaggtaaataagattcctgggaatcatttattcctgggtatattatttttgttccattcta 279  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  34917484 agagtcaacgggtaaataagattcctgggaatcatttattcctgggtatattatttttgttcccttcta 34917416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 99; Significance: 7e-49; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 34 - 279
Target Start/End: Complemental strand, 34147741 - 34147490
Alignment:
Q  34 agcagagaggggtttatatat--atgtgggtttctattaatttagaaaacgcgtgggaaaaattaggagggaataagcgcgggtaaaataggggtatggg 131  Q
    |||| ||||||||||||||||  |||||||||||||||||||| ||||| | ||||||||||||||||||||| ||| | ||||||||||||| ||||||    
T  34147741 agcaaagaggggtttatatatgtatgtgggtttctattaatttggaaaatgagtgggaaaaattaggagggaaaaagtg-gggtaaaatagggatatggg 34147643  T
Q  132 tggg-------ttttcgccatgaatgtggagatttcatttccagggattgaagattccagnnnnnnnnnnnngggaataaaaatagagagtcaacaggta 224  Q
    ||||       ||||| |||| ||||||||||||||||||||||| ||||||||||||||             |||||||||||  ||||||||  |||     
T  34147642 tgggttttcaattttcaccataaatgtggagatttcatttccaggaattgaagattccagccccccaaccccaggaataaaaat--agagtcaatgggtt 34147545  T
Q  225 aataagattcctgggaatcatttattcctgggtatattatttttgttccattcta 279  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||| |||||    
T  34147544 aataagattcctgggaatcatttattcctaggtatattatttttgttcccttcta 34147490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 59 - 136
Target Start/End: Original strand, 28983852 - 28983929
Alignment:
Q  59 gggtttctattaatttagaaaacgcgtgggaaaaattaggagggaataagcgcgggtaaaataggggtatgggtgggt 136  Q
    |||||| ||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||    
T  28983852 gggtttatattaatttggaaaacgcgtgggaaaaattaggagggaagaagcacgggtaaaataggggtatgggtgggt 28983929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 279
Target Start/End: Original strand, 28888171 - 28888219
Alignment:
Q  231 attcctgggaatcatttattcctgggtatattatttttgttccattcta 279  Q
    ||||||||| || |||||||| ||||||||||||||||||||| |||||    
T  28888171 attcctgggtattatttattcttgggtatattatttttgttcctttcta 28888219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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