View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10468_low_32 (Length: 290)
Name: NF10468_low_32
Description: NF10468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10468_low_32 |
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Alignment Details
Target: chr2 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 24 - 209
Target Start/End: Complemental strand, 39267608 - 39267423
Alignment:
| Q |
24 |
cagaccagggagaaatggttgaagaagagaaagatcttataggtttgaaggaagtgagagagaaatgtaagggtgagagtctcaacgttgtgagtttcag |
123 |
Q |
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| T |
39267608 |
cagaccagggagaaatggttgaagaagagaaacatcttataggtttgaaggaagtgagagagaaatgtaagggtgagagtctcaacgttgtgagtttcag |
39267509 |
T |
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| Q |
124 |
acgctgcattgcaatactagagcctcacacttccttcatgctttcatcaaatatctctcatggaacttcacatttgatatttgtat |
209 |
Q |
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| T |
39267508 |
acgctgcattgcaatactagagcctcacacttccttcatgctttcatcaaatatctctcatggaacttcacatttgatatttgtat |
39267423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 205 - 258
Target Start/End: Complemental strand, 39267405 - 39267352
Alignment:
| Q |
205 |
tgtattattacatttgtttagatgaggataacacttaaggtgacatacttttta |
258 |
Q |
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| T |
39267405 |
tgtattattacatttgtttagatgaggataacacttaaggtgacatacttttta |
39267352 |
T |
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