View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10468_low_36 (Length: 252)
Name: NF10468_low_36
Description: NF10468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10468_low_36 |
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| [»] chr6 (4 HSPs) |
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| [»] scaffold0202 (1 HSPs) |
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| [»] scaffold0018 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 201; Significance: 1e-110; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 13 - 252
Target Start/End: Complemental strand, 31080577 - 31080344
Alignment:
| Q |
13 |
agaagaaactccaatttttgaaggaaataatcatccaattccaaatccaacaagctgtatgaaggtttatctctctcacacacacaaataataatttttg |
112 |
Q |
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| T |
31080577 |
agaagaaactccaatttttgaaggaaacaatcatccaattccaaatccaacaagctgtacgaaggtttatctctctcacacacacaaataataatttttg |
31080478 |
T |
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| Q |
113 |
cagttactgcacttgggtatgtttcaaatcagattttgctgaaactaatagtctccctcaccctctttaattgttcatcagtgacagcagcaaccaaaga |
212 |
Q |
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| T |
31080477 |
caactactgcacttgggtatgtttcaaatcagattttgctgaaactaatagtctccctcaccctc------tgttcatcagtgacagcagcaaccaaaga |
31080384 |
T |
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| Q |
213 |
ttcacttgatctttataaaaggaaagacaattaacaacta |
252 |
Q |
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| T |
31080383 |
ttcacttgatctttataaaaggaaagacaattaacaacta |
31080344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 13 - 72
Target Start/End: Complemental strand, 31027054 - 31026995
Alignment:
| Q |
13 |
agaagaaactccaatttttgaaggaaataatcatccaattccaaatccaacaagctgtat |
72 |
Q |
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| T |
31027054 |
agaagaaactccaatatttgaagcaaatattaatccaattccaaatccaacaagttgtat |
31026995 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 33 - 96
Target Start/End: Complemental strand, 31045890 - 31045827
Alignment:
| Q |
33 |
aaggaaataatcatccaattccaaatccaacaagctgtatgaaggtttatctctctcacacaca |
96 |
Q |
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| T |
31045890 |
aaggaaatactaatccaattccaaatccaacaagttgcaggaaggtttatctctctctcacaca |
31045827 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 96
Target Start/End: Complemental strand, 31069932 - 31069852
Alignment:
| Q |
16 |
agaaactccaatttttgaaggaaataatcatccaattccaaatccaacaagctgtatgaaggtttatctctctcacacaca |
96 |
Q |
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| T |
31069932 |
agaaactccaatatctgaagcaaatactaatccaattccaaatccaacaagtttcaggaaggtctatctctcacacacaca |
31069852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0202 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0202
Description:
Target: scaffold0202; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 131 - 188
Target Start/End: Original strand, 16967 - 17023
Alignment:
| Q |
131 |
atgtttcaaatcagattttgctgaaactaatagtctccctcaccctctttaattgttc |
188 |
Q |
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| T |
16967 |
atgtttcaaattagattttgctgcaa-taatagtctccctaacgctcttcaattgttc |
17023 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 49 - 94
Target Start/End: Original strand, 170853 - 170898
Alignment:
| Q |
49 |
aattccaaatccaacaagctgtatgaaggtttatctctctcacaca |
94 |
Q |
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| T |
170853 |
aattccaaatccaacaagctgcagaaaggtttatctctctcgcaca |
170898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 139 - 192
Target Start/End: Complemental strand, 33535368 - 33535316
Alignment:
| Q |
139 |
aatcagattttgctgaaactaatagtctccctcaccctctttaattgttcatca |
192 |
Q |
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| T |
33535368 |
aatcagattttactgaa-ctaatagactccctcaccatcttcaattgttcatca |
33535316 |
T |
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