View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10468_low_39 (Length: 250)
Name: NF10468_low_39
Description: NF10468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10468_low_39 |
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Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 51406308 - 51406064
Alignment:
| Q |
1 |
tcatagacatgtgtttgcatgcacttaatggatatgagttcagttgtcaaaatacaaagagtcaacacatcaacctaaatgctagaggttttcaatggat |
100 |
Q |
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| T |
51406308 |
tcatagacatgtgtttgcatgcacttaatggatatgagttcagttgtcaaaatacaaagagtcaacacatcaacctatatgctagaggttttcaatggat |
51406209 |
T |
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| Q |
101 |
ttaaatttcctcattttctccatgtgaaatgataacaacaatctctttctctttttgacattttcttcaactctaaagtgttgactctacaataatttca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
51406208 |
ttaaatttcctcattttctccatgtgaaatgataacaacaatctctttctctttttgacattttcttcaactctaaagtggagactctacaataatttca |
51406109 |
T |
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| Q |
201 |
aataataataaaagagtgagtgttagagaaaatgttcatctctct |
245 |
Q |
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| T |
51406108 |
aataataataaaagagtgagtgttagagaaaatgttcatatctct |
51406064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 207 - 238
Target Start/End: Original strand, 13070070 - 13070101
Alignment:
| Q |
207 |
aataaaagagtgagtgttagagaaaatgttca |
238 |
Q |
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| T |
13070070 |
aataaaagagtgagtgttagagaaaatgttca |
13070101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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