View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10468_low_4 (Length: 484)
Name: NF10468_low_4
Description: NF10468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10468_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 1 - 466
Target Start/End: Original strand, 25787229 - 25787691
Alignment:
| Q |
1 |
aatccttcacaatatctataatttttattcataaagttacactgtttcataatttatatagactacatcctggagcctt-tttatattgannnnnnnaat |
99 |
Q |
| |
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||||||||||||||||||||| |||||| || ||||||| | | |||||||||||||| ||||||| ||||| |||| ||| |||||| ||| |
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| T |
25787229 |
aatccttcacaatatctataaattttatgca---agttacattatctcataatttatataaactacatgctggaaccttctttttattgattttat-aat |
25787324 |
T |
|
| Q |
100 |
ctgccctctctctccaaccttttgcagtttaagctttgcaaggtacgatctgttcagtttggtcagaaagggataccctatctgaacacctatgatgggc |
199 |
Q |
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|||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25787325 |
ctgccctccctcttcaaccttttgcagtttaagctttgcaaggtacgatctgttcagtttggtcagaaagggataccctatctgaacacctatgatgggc |
25787424 |
T |
|
| Q |
200 |
gtacaatccgctatcctgatccccttattaaggccaatgacacaatcaaactagacttggaacaaaacaagataaccgatttcatcaaatttgatgtggg |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
25787425 |
gtacaatccgctatcctgatccccttattaaggccaatgacacaatcaaactagacttggaacagaacaagataaccgatttcatcaaatttgatgtggg |
25787524 |
T |
|
| Q |
300 |
gaatattgttatggtgactggaggaaggaacagaggtcgtgttggtttcatcaagaacagagagaaacacatgggcacttttgagaccattcatgtccag |
399 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |
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| T |
25787525 |
gaatgttgttatggtgactggaggaaggaacagaggtcgtgttggtttcatcaagaacagaaagaaacacatgggcacttttgagacgattcatgtccag |
25787624 |
T |
|
| Q |
400 |
gatgctgctggtcatgagtttgcaacccgattgggtaatgtcttcaccattggcagagggccgaaac |
466 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25787625 |
gatgctgctggtcatgagtttgcaacccgattgggtaatgtcttcaccattggcagagggccgaaac |
25787691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 132; Significance: 2e-68; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 123 - 422
Target Start/End: Complemental strand, 4139870 - 4139571
Alignment:
| Q |
123 |
gcagtttaagctttgcaaggtacgatctgttcagtttggtcagaaagggataccctatctgaacacctatgatgggcgtacaatccgctatcctgatccc |
222 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||| || || ||||| || || ||||||||||||||||||||||| || || ||||| ||||| ||||| |
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| T |
4139870 |
gcagtttaagctctgcaaggttcgatctgttcaattcggacagaagggcattccctatctgaacacctatgatggtcgcaccatccgttatccagatcca |
4139771 |
T |
|
| Q |
223 |
cttattaaggccaatgacacaatcaaactagacttggaacaaaacaagataaccgatttcatcaaatttgatgtggggaatattgttatggtgactggag |
322 |
Q |
| |
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|| |||||||| |||||||| |||||||| ||| | ||| | |||||||| || ||||| ||||| ||||||||||||||| |||| ||||| || |||| |
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| T |
4139770 |
ctaattaaggctaatgacaccatcaaacttgaccttgaaaacaacaagatcactgattttatcaagtttgatgtggggaatgttgtcatggttaccggag |
4139671 |
T |
|
| Q |
323 |
gaaggaacagaggtcgtgttggtttcatcaagaacagagagaaacacatgggcacttttgagaccattcatgtccaggatgctgctggtcatgagtttgc |
422 |
Q |
| |
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||||||| ||||||||||||||| |||||||||||||||||||||| | || ||||||||||| ||||| || |||||||| ||||||||||||||| |
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| T |
4139670 |
gaaggaatagaggtcgtgttggtgtcatcaagaacagagagaaacataaaggaacttttgagactattcacgttcaggatgcaagtggtcatgagtttgc |
4139571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 123 - 454
Target Start/End: Complemental strand, 7109538 - 7109207
Alignment:
| Q |
123 |
gcagtttaagctttgcaaggtacgatctgttcagtttggtcagaaagggataccctatctgaacacctatgatgggcgtacaatccgctatcctgatccc |
222 |
Q |
| |
|
|||||||||||| |||||||| || || || || ||||| |||||||| || || || ||||||||||||||||| || || |||||||| ||||| || |
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| T |
7109538 |
gcagtttaagctgtgcaaggtgcgttcagtgcaatttgggcagaaaggtatcccatacctgaacacctatgatggtcgcactatccgctaccctgaccca |
7109439 |
T |
|
| Q |
223 |
cttattaaggccaatgacacaatcaaactagacttggaacaaaacaagataaccgatttcatcaaatttgatgtggggaatattgttatggtgactggag |
322 |
Q |
| |
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| || | ||| |||||||||||||| || ||| | || |||||||||| ||||||||||||||| ||||| |||||| | || ||||| ||||| | |
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| T |
7109438 |
gtcatcagggctaatgacacaatcaagctggaccttgaggaaaacaagattgtcgatttcatcaaattcgatgttgggaatgtagtgatggttactggtg |
7109339 |
T |
|
| Q |
323 |
gaaggaacagaggtcgtgttggtttcatcaagaacagagagaaacacatgggcacttttgagaccattcatgtccaggatgctgctggtcatgagtttgc |
422 |
Q |
| |
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| | ||| || || |||||||| | |||||||||||||| || || | ||| || |||||||| || || || |||||||| |||||||||||||||| |
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| T |
7109338 |
gtaagaatagggggcgtgttggagtgatcaagaacagagaaaagcataagggaacctttgagacaatccacgttcaggatgccactggtcatgagtttgc |
7109239 |
T |
|
| Q |
423 |
aacccgattgggtaatgtcttcaccattggca |
454 |
Q |
| |
|
||| || ||| ||||| ||||| ||||||| |
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| T |
7109238 |
aactcgtctggtcaatgtgttcactattggca |
7109207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 123 - 454
Target Start/End: Complemental strand, 19327018 - 19326687
Alignment:
| Q |
123 |
gcagtttaagctttgcaaggtacgatctgttcagtttggtcagaaagggataccctatctgaacacctatgatgggcgtacaatccgctatcctgatccc |
222 |
Q |
| |
|
|||||| ||||| |||||||| || || || || ||||| |||||||| || || || || |||||||||||||| || || ||||| || || || ||| |
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| T |
19327018 |
gcagttcaagctctgcaaggttcgttcagtgcaatttgggcagaaaggtatcccataccttaacacctatgatggtcgcactatccgttacccagacccc |
19326919 |
T |
|
| Q |
223 |
cttattaaggccaatgacacaatcaaactagacttggaacaaaacaagataaccgatttcatcaaatttgatgtggggaatattgttatggtgactggag |
322 |
Q |
| |
|
| || | ||| |||||||| ||||| || || |||| |||||||||| |||||||||||||||||||| ||||| | |||||||| ||||| | |
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|
| T |
19326918 |
gtcatcagggctaatgacaccatcaagctggatctggaggaaaacaagattgttgatttcatcaaatttgatgttgggaacgtcgttatggttactggtg |
19326819 |
T |
|
| Q |
323 |
gaaggaacagaggtcgtgttggtttcatcaagaacagagagaaacacatgggcacttttgagaccattcatgtccaggatgctgctggtcatgagtttgc |
422 |
Q |
| |
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| | ||| || || |||||||| | || |||||||||||||| || | ||| || || ||||| || || || |||||||| ||||||||||||| || |
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| T |
19326818 |
gtaagaataggggacgtgttggagtgattaagaacagagagaagcataagggaacattcgagacaatccacgttcaggatgccactggtcatgagttcgc |
19326719 |
T |
|
| Q |
423 |
aacccgattgggtaatgtcttcaccattggca |
454 |
Q |
| |
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||| || |||| ||||| || || ||||||| |
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|
| T |
19326718 |
aactcgtttggtcaatgtgtttactattggca |
19326687 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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