View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10468_low_43 (Length: 244)

Name: NF10468_low_43
Description: NF10468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10468_low_43
NF10468_low_43
[»] chr8 (8 HSPs)
chr8 (7-206)||(31088731-31088927)
chr8 (200-244)||(2890253-2890297)
chr8 (202-244)||(54703-54745)
chr8 (203-244)||(4245672-4245713)
chr8 (203-244)||(7785869-7785910)
chr8 (203-244)||(7805790-7805831)
chr8 (204-244)||(32211454-32211494)
chr8 (204-244)||(43199445-43199485)
[»] chr7 (9 HSPs)
chr7 (202-244)||(9268753-9268795)
chr7 (202-244)||(1738538-1738580)
chr7 (202-244)||(7240746-7240788)
chr7 (203-244)||(1565820-1565861)
chr7 (203-244)||(46840858-46840899)
chr7 (204-244)||(4790247-4790287)
chr7 (204-244)||(7482224-7482264)
chr7 (204-244)||(28536842-28536882)
chr7 (204-244)||(38064004-38064044)
[»] chr6 (9 HSPs)
chr6 (202-244)||(13853684-13853726)
chr6 (202-244)||(6068563-6068605)
chr6 (202-244)||(8383060-8383102)
chr6 (203-244)||(33052885-33052926)
chr6 (204-244)||(2830334-2830374)
chr6 (200-244)||(6330110-6330154)
chr6 (204-244)||(8099529-8099569)
chr6 (204-244)||(11572236-11572276)
chr6 (204-244)||(35031092-35031132)
[»] chr5 (7 HSPs)
chr5 (22-63)||(16288362-16288403)
chr5 (204-244)||(23359941-23359981)
chr5 (201-244)||(20848070-20848113)
chr5 (202-244)||(582986-583028)
chr5 (202-244)||(37149046-37149088)
chr5 (202-244)||(37641950-37641992)
chr5 (203-244)||(4443958-4443999)
[»] chr3 (12 HSPs)
chr3 (203-244)||(8817477-8817518)
chr3 (203-244)||(9111585-9111626)
chr3 (200-244)||(8437420-8437464)
chr3 (200-244)||(21295417-21295461)
chr3 (202-244)||(4238591-4238633)
chr3 (202-244)||(22721928-22721970)
chr3 (202-244)||(34080121-34080163)
chr3 (215-244)||(36095771-36095800)
chr3 (203-244)||(44785487-44785528)
chr3 (204-244)||(19557143-19557183)
chr3 (77-137)||(40227484-40227544)
chr3 (204-244)||(49823472-49823512)
[»] chr2 (8 HSPs)
chr2 (204-244)||(38917613-38917653)
chr2 (203-244)||(37990104-37990145)
chr2 (203-244)||(41478730-41478771)
chr2 (204-244)||(3055557-3055597)
chr2 (204-244)||(4684023-4684063)
chr2 (204-244)||(15896841-15896881)
chr2 (204-244)||(44397546-44397586)
chr2 (204-244)||(44398685-44398725)
[»] chr1 (9 HSPs)
chr1 (201-244)||(12483719-12483762)
chr1 (201-244)||(26471156-26471199)
chr1 (201-244)||(47588428-47588471)
chr1 (202-244)||(27159449-27159491)
chr1 (202-244)||(44668184-44668226)
chr1 (203-244)||(11795931-11795972)
chr1 (18-63)||(44126464-44126509)
chr1 (204-244)||(9981646-9981686)
chr1 (204-244)||(34042695-34042735)
[»] scaffold0204 (1 HSPs)
scaffold0204 (202-244)||(23782-23824)
[»] chr4 (6 HSPs)
chr4 (202-244)||(3372118-3372160)
chr4 (202-244)||(47833608-47833650)
chr4 (202-244)||(48336260-48336302)
chr4 (202-244)||(51894673-51894715)
chr4 (204-244)||(26231576-26231616)
chr4 (204-244)||(33551200-33551240)
[»] scaffold0482 (1 HSPs)
scaffold0482 (203-244)||(12858-12899)
[»] scaffold0009 (1 HSPs)
scaffold0009 (203-244)||(49503-49544)


Alignment Details
Target: chr8 (Bit Score: 132; Significance: 1e-68; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 7 - 206
Target Start/End: Original strand, 31088731 - 31088927
Alignment:
Q  7 gaggactcaagtttgattctctctaataccaatttgggtaggctaatttaacttcttnnnnnnnnnnnttttgaacataattaaatctttttattcttct 106  Q
    |||| |||| |||||||||||||| |||||||||| |||||||||||||||||||||             ||||| ||||||||||||||||||||||||    
T  31088731 gaggtctcaggtttgattctctctgataccaatttaggtaggctaatttaacttcttcaaaaaaaaa---ttgaaaataattaaatctttttattcttct 31088827  T
Q  107 tagttttatccacaatcttgtttgcaatcaaaatcccgacaagaatttgtttgtccttcgcaaaagtcggctaagttatgtagacaacaccttattaata 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  31088828 tagttttatccacaatcttgtttgcaatcaaaatcccgacaagaatttgtttgtccttcacaaaagtcggctaagttatgtagacaacaccttattaata 31088927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 200 - 244
Target Start/End: Complemental strand, 2890297 - 2890253
Alignment:
Q  200 attaatactacctttggtcctatttataagataaatttaggtcaa 244  Q
    |||||||||||||  |||||||||||||||| |||||||||||||    
T  2890297 attaatactacctccggtcctatttataagagaaatttaggtcaa 2890253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 244
Target Start/End: Complemental strand, 54745 - 54703
Alignment:
Q  202 taatactacctttggtcctatttataagataaatttaggtcaa 244  Q
    |||||||||||  |||||||||||||||| |||||||||||||    
T  54745 taatactacctccggtcctatttataagagaaatttaggtcaa 54703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 244
Target Start/End: Complemental strand, 4245713 - 4245672
Alignment:
Q  203 aatactacctttggtcctatttataagataaatttaggtcaa 244  Q
    ||||||||||  |||||||||||||||| |||||||||||||    
T  4245713 aatactacctccggtcctatttataagagaaatttaggtcaa 4245672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 244
Target Start/End: Complemental strand, 7785910 - 7785869
Alignment:
Q  203 aatactacctttggtcctatttataagataaatttaggtcaa 244  Q
    ||||||||||  |||||||||||||||| |||||||||||||    
T  7785910 aatactacctccggtcctatttataagagaaatttaggtcaa 7785869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 244
Target Start/End: Complemental strand, 7805831 - 7805790
Alignment:
Q  203 aatactacctttggtcctatttataagataaatttaggtcaa 244  Q
    ||||||||||  |||||||||||||||| |||||||||||||    
T  7805831 aatactacctccggtcctatttataagagaaatttaggtcaa 7805790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 244
Target Start/End: Complemental strand, 32211494 - 32211454
Alignment:
Q  204 atactacctttggtcctatttataagataaatttaggtcaa 244  Q
    |||||||||  |||||||||||||||| |||||||||||||    
T  32211494 atactacctccggtcctatttataagagaaatttaggtcaa 32211454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 244
Target Start/End: Complemental strand, 43199485 - 43199445
Alignment:
Q  204 atactacctttggtcctatttataagataaatttaggtcaa 244  Q
    |||||||||  |||||||||||||||| |||||||||||||    
T  43199485 atactacctccggtcctatttataagagaaatttaggtcaa 43199445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 202 - 244
Target Start/End: Original strand, 9268753 - 9268795
Alignment:
Q  202 taatactacctttggtcctatttataagataaatttaggtcaa 244  Q
    ||||||||||| ||||||||||||||||| |||||||||||||    
T  9268753 taatactacctctggtcctatttataagagaaatttaggtcaa 9268795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 244
Target Start/End: Complemental strand, 1738580 - 1738538
Alignment:
Q  202 taatactacctttggtcctatttataagataaatttaggtcaa 244  Q
    |||||||||||  |||||||||||||||| |||||||||||||    
T  1738580 taatactacctccggtcctatttataagagaaatttaggtcaa 1738538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 244
Target Start/End: Original strand, 7240746 - 7240788
Alignment:
Q  202 taatactacctttggtcctatttataagataaatttaggtcaa 244  Q
    |||||||||||  |||||||||||||||| |||||||||||||    
T  7240746 taatactacctccggtcctatttataagagaaatttaggtcaa 7240788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 244
Target Start/End: Complemental strand, 1565861 - 1565820
Alignment:
Q  203 aatactacctttggtcctatttataagataaatttaggtcaa 244  Q
    ||||||||||  |||||||||||||||| |||||||||||||    
T  1565861 aatactacctccggtcctatttataagagaaatttaggtcaa 1565820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 244
Target Start/End: Original strand, 46840858 - 46840899
Alignment:
Q  203 aatactacctttggtcctatttataagataaatttaggtcaa 244  Q
    ||||||||||  |||||||||||||||| |||||||||||||    
T  46840858 aatactacctccggtcctatttataagagaaatttaggtcaa 46840899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 244
Target Start/End: Original strand, 4790247 - 4790287
Alignment:
Q  204 atactacctttggtcctatttataagataaatttaggtcaa 244  Q
    |||||||||  |||||||||||||||| |||||||||||||    
T  4790247 atactacctccggtcctatttataagaaaaatttaggtcaa 4790287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 244
Target Start/End: Original strand, 7482224 - 7482264
Alignment:
Q  204 atactacctttggtcctatttataagataaatttaggtcaa 244  Q
    |||||||||  |||||||||||||||| |||||||||||||    
T  7482224 atactacctccggtcctatttataagagaaatttaggtcaa 7482264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 244
Target Start/End: Complemental strand, 28536882 - 28536842
Alignment:
Q  204 atactacctttggtcctatttataagataaatttaggtcaa 244  Q
    |||||||||  |||||||||||||||| |||||||||||||    
T  28536882 atactacctccggtcctatttataagagaaatttaggtcaa 28536842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 244
Target Start/End: Complemental strand, 38064044 - 38064004
Alignment:
Q  204 atactacctttggtcctatttataagataaatttaggtcaa 244  Q
    |||||||||  |||||||||||||||| |||||||||||||    
T  38064044 atactacctccggtcctatttataagagaaatttaggtcaa 38064004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 202 - 244
Target Start/End: Complemental strand, 13853726 - 13853684
Alignment:
Q  202 taatactacctttggtcctatttataagataaatttaggtcaa 244  Q
    |||||||||||| |||||||||||||||| |||||||||||||    
T  13853726 taatactaccttcggtcctatttataagagaaatttaggtcaa 13853684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 244
Target Start/End: Original strand, 6068563 - 6068605
Alignment:
Q  202 taatactacctttggtcctatttataagataaatttaggtcaa 244  Q
    |||||||||||  |||||||||||||||| |||||||||||||    
T  6068563 taatactacctccggtcctatttataagaaaaatttaggtcaa 6068605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 244
Target Start/End: Complemental strand, 8383102 - 8383060
Alignment:
Q  202 taatactacctttggtcctatttataagataaatttaggtcaa 244  Q
    |||||||||||  |||||||||||||||| |||||||||||||    
T  8383102 taatactacctccggtcctatttataagagaaatttaggtcaa 8383060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 244
Target Start/End: Complemental strand, 33052926 - 33052885
Alignment:
Q  203 aatactacctttggtcctatttataagataaatttaggtcaa 244  Q
    ||||||||||  |||||||||||||||| |||||||||||||    
T  33052926 aatactacctccggtcctatttataagagaaatttaggtcaa 33052885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 244
Target Start/End: Original strand, 2830334 - 2830374
Alignment:
Q  204 atactacctttggtcctatttataagataaatttaggtcaa 244  Q
    |||||||||  |||||||||||||||| |||||||||||||    
T  2830334 atactacctccggtcctatttataagagaaatttaggtcaa 2830374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 244
Target Start/End: Original strand, 6330110 - 6330154
Alignment:
Q  200 attaatactacctttggtcctatttataagataaatttaggtcaa 244  Q
    |||| ||||||||  |||||||||||||||| |||||||||||||    
T  6330110 attactactacctccggtcctatttataagagaaatttaggtcaa 6330154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 244
Target Start/End: Original strand, 8099529 - 8099569
Alignment:
Q  204 atactacctttggtcctatttataagataaatttaggtcaa 244  Q
    |||||||||  |||||||||||||||| |||||||||||||    
T  8099529 atactacctccggtcctatttataagagaaatttaggtcaa 8099569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 244
Target Start/End: Complemental strand, 11572276 - 11572236
Alignment:
Q  204 atactacctttggtcctatttataagataaatttaggtcaa 244  Q
    |||||||||  |||||||||||||||| |||||||||||||    
T  11572276 atactacctccggtcctatttataagagaaatttaggtcaa 11572236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 244
Target Start/End: Complemental strand, 35031132 - 35031092
Alignment:
Q  204 atactacctttggtcctatttataagataaatttaggtcaa 244  Q
    |||||||||  |||||||||||||||| |||||||||||||    
T  35031132 atactacctccggtcctatttataagaaaaatttaggtcaa 35031092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 63
Target Start/End: Complemental strand, 16288403 - 16288362
Alignment:
Q  22 attctctctaataccaatttgggtaggctaatttaacttctt 63  Q
    |||||||||| ||||||||| |||||||||||||||||||||    
T  16288403 attctctctagtaccaatttaggtaggctaatttaacttctt 16288362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 204 - 244
Target Start/End: Original strand, 23359941 - 23359981
Alignment:
Q  204 atactacctttggtcctatttataagataaatttaggtcaa 244  Q
    ||||||||| ||||||||||||||||| |||||||||||||    
T  23359941 atactacctctggtcctatttataagagaaatttaggtcaa 23359981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 201 - 244
Target Start/End: Original strand, 20848070 - 20848113
Alignment:
Q  201 ttaatactacctttggtcctatttataagataaatttaggtcaa 244  Q
    ||||||||||||  |||||||||||||||| |||||||||||||    
T  20848070 ttaatactacctccggtcctatttataagagaaatttaggtcaa 20848113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 244
Target Start/End: Original strand, 582986 - 583028
Alignment:
Q  202 taatactacctttggtcctatttataagataaatttaggtcaa 244  Q
    |||||||||||  |||||||||||||||| |||||||||||||    
T  582986 taatactacctccggtcctatttataagagaaatttaggtcaa 583028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 244
Target Start/End: Complemental strand, 37149088 - 37149046
Alignment:
Q  202 taatactacctttggtcctatttataagataaatttaggtcaa 244  Q
    |||||||||||  |||||||||||||||| |||||||||||||    
T  37149088 taatactacctccggtcctatttataagagaaatttaggtcaa 37149046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 244
Target Start/End: Original strand, 37641950 - 37641992
Alignment:
Q  202 taatactacctttggtcctatttataagataaatttaggtcaa 244  Q
    |||||||||||  |||||||||||||||| |||||||||||||    
T  37641950 taatactacctccggtcctatttataagagaaatttaggtcaa 37641992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 244
Target Start/End: Original strand, 4443958 - 4443999
Alignment:
Q  203 aatactacctttggtcctatttataagataaatttaggtcaa 244  Q
    |||||| |||| |||||||||||||||| |||||||||||||    
T  4443958 aatacttccttcggtcctatttataagagaaatttaggtcaa 4443999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 203 - 244
Target Start/End: Complemental strand, 8817518 - 8817477
Alignment:
Q  203 aatactacctttggtcctatttataagataaatttaggtcaa 244  Q
    ||||||||||| |||||||||||||||| |||||||||||||    
T  8817518 aatactaccttcggtcctatttataagagaaatttaggtcaa 8817477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 203 - 244
Target Start/End: Complemental strand, 9111626 - 9111585
Alignment:
Q  203 aatactacctttggtcctatttataagataaatttaggtcaa 244  Q
    ||||||||||| |||||||||||||||| |||||||||||||    
T  9111626 aatactaccttcggtcctatttataagagaaatttaggtcaa 9111585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 200 - 244
Target Start/End: Original strand, 8437420 - 8437464
Alignment:
Q  200 attaatactacctttggtcctatttataagataaatttaggtcaa 244  Q
    |||||||||||||  |||||||||||||||| |||||||||||||    
T  8437420 attaatactacctccggtcctatttataagagaaatttaggtcaa 8437464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 200 - 244
Target Start/End: Complemental strand, 21295461 - 21295417
Alignment:
Q  200 attaatactacctttggtcctatttataagataaatttaggtcaa 244  Q
    |||||||||||||  |||||||||||||||| |||||||||||||    
T  21295461 attaatactacctccggtcctatttataagagaaatttaggtcaa 21295417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 244
Target Start/End: Original strand, 4238591 - 4238633
Alignment:
Q  202 taatactacctttggtcctatttataagataaatttaggtcaa 244  Q
    |||||||||||  |||||||||||||||| |||||||||||||    
T  4238591 taatactacctccggtcctatttataagagaaatttaggtcaa 4238633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 244
Target Start/End: Original strand, 22721928 - 22721970
Alignment:
Q  202 taatactacctttggtcctatttataagataaatttaggtcaa 244  Q
    |||||||||||  |||||||||||||||| |||||||||||||    
T  22721928 taatactacctccggtcctatttataagagaaatttaggtcaa 22721970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 244
Target Start/End: Complemental strand, 34080163 - 34080121
Alignment:
Q  202 taatactacctttggtcctatttataagataaatttaggtcaa 244  Q
    |||||||||||  |||||||||||||||| |||||||||||||    
T  34080163 taatactacctccggtcctatttataagagaaatttaggtcaa 34080121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 215 - 244
Target Start/End: Complemental strand, 36095800 - 36095771
Alignment:
Q  215 ggtcctatttataagataaatttaggtcaa 244  Q
    ||||||||||||||||||||||||||||||    
T  36095800 ggtcctatttataagataaatttaggtcaa 36095771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 244
Target Start/End: Complemental strand, 44785528 - 44785487
Alignment:
Q  203 aatactacctttggtcctatttataagataaatttaggtcaa 244  Q
    ||||||||||  |||||||||||||||| |||||||||||||    
T  44785528 aatactacctccggtcctatttataagagaaatttaggtcaa 44785487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 244
Target Start/End: Complemental strand, 19557183 - 19557143
Alignment:
Q  204 atactacctttggtcctatttataagataaatttaggtcaa 244  Q
    |||||||||  |||||||||||||||| |||||||||||||    
T  19557183 atactacctccggtcctatttataagagaaatttaggtcaa 19557143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 137
Target Start/End: Complemental strand, 40227544 - 40227484
Alignment:
Q  77 ttgaacataattaaatctttttattcttcttagttttatccacaatcttgtttgcaatcaa 137  Q
    |||||||| ||||||||  ||| ||||| |||| || ||||||||||||||| ||||||||    
T  40227544 ttgaacatgattaaatccctttgttctttttagcttcatccacaatcttgttggcaatcaa 40227484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 244
Target Start/End: Complemental strand, 49823512 - 49823472
Alignment:
Q  204 atactacctttggtcctatttataagataaatttaggtcaa 244  Q
    |||||||||  |||||||||||||||| |||||||||||||    
T  49823512 atactacctccggtcctatttataagagaaatttaggtcaa 49823472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 204 - 244
Target Start/End: Complemental strand, 38917653 - 38917613
Alignment:
Q  204 atactacctttggtcctatttataagataaatttaggtcaa 244  Q
    |||||||||  ||||||||||||||||||||||||||||||    
T  38917653 atactacctccggtcctatttataagataaatttaggtcaa 38917613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 244
Target Start/End: Complemental strand, 37990145 - 37990104
Alignment:
Q  203 aatactacctttggtcctatttataagataaatttaggtcaa 244  Q
    ||||||||||  |||||||||||||||| |||||||||||||    
T  37990145 aatactacctccggtcctatttataagagaaatttaggtcaa 37990104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 244
Target Start/End: Complemental strand, 41478771 - 41478730
Alignment:
Q  203 aatactacctttggtcctatttataagataaatttaggtcaa 244  Q
    ||||||||||  |||||||||||||||| |||||||||||||    
T  41478771 aatactacctccggtcctatttataagagaaatttaggtcaa 41478730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 244
Target Start/End: Original strand, 3055557 - 3055597
Alignment:
Q  204 atactacctttggtcctatttataagataaatttaggtcaa 244  Q
    |||||||||  |||||||||||||||| |||||||||||||    
T  3055557 atactacctccggtcctatttataagagaaatttaggtcaa 3055597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 244
Target Start/End: Complemental strand, 4684063 - 4684023
Alignment:
Q  204 atactacctttggtcctatttataagataaatttaggtcaa 244  Q
    |||||||||  |||||||||||||||| |||||||||||||    
T  4684063 atactacctccggtcctatttataagagaaatttaggtcaa 4684023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 244
Target Start/End: Original strand, 15896841 - 15896881
Alignment:
Q  204 atactacctttggtcctatttataagataaatttaggtcaa 244  Q
    |||||||||  |||||||||||||||| |||||||||||||    
T  15896841 atactacctccggtcctatttataagagaaatttaggtcaa 15896881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 244
Target Start/End: Original strand, 44397546 - 44397586
Alignment:
Q  204 atactacctttggtcctatttataagataaatttaggtcaa 244  Q
    |||||||||  |||||||||||||||| |||||||||||||    
T  44397546 atactacctccggtcctatttataagagaaatttaggtcaa 44397586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 244
Target Start/End: Original strand, 44398685 - 44398725
Alignment:
Q  204 atactacctttggtcctatttataagataaatttaggtcaa 244  Q
    |||||||||  |||||||||||||||| |||||||||||||    
T  44398685 atactacctccggtcctatttataagagaaatttaggtcaa 44398725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 201 - 244
Target Start/End: Complemental strand, 12483762 - 12483719
Alignment:
Q  201 ttaatactacctttggtcctatttataagataaatttaggtcaa 244  Q
    ||||||||||||  |||||||||||||||| |||||||||||||    
T  12483762 ttaatactacctccggtcctatttataagagaaatttaggtcaa 12483719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 201 - 244
Target Start/End: Complemental strand, 26471199 - 26471156
Alignment:
Q  201 ttaatactacctttggtcctatttataagataaatttaggtcaa 244  Q
    ||||||||||||  |||||||||||||||| |||||||||||||    
T  26471199 ttaatactacctccggtcctatttataagagaaatttaggtcaa 26471156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 201 - 244
Target Start/End: Complemental strand, 47588471 - 47588428
Alignment:
Q  201 ttaatactacctttggtcctatttataagataaatttaggtcaa 244  Q
    |||||||||||| ||||| ||||||||||| |||||||||||||    
T  47588471 ttaatactacctctggtcttatttataagagaaatttaggtcaa 47588428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 244
Target Start/End: Complemental strand, 27159491 - 27159449
Alignment:
Q  202 taatactacctttggtcctatttataagataaatttaggtcaa 244  Q
    |||||||||||  |||||||||||||||| |||||||||||||    
T  27159491 taatactacctccggtcctatttataagagaaatttaggtcaa 27159449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 244
Target Start/End: Complemental strand, 44668226 - 44668184
Alignment:
Q  202 taatactacctttggtcctatttataagataaatttaggtcaa 244  Q
    |||||||||||  |||||||||||||||| |||||||||||||    
T  44668226 taatactacctccggtcctatttataagagaaatttaggtcaa 44668184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 244
Target Start/End: Original strand, 11795931 - 11795972
Alignment:
Q  203 aatactacctttggtcctatttataagataaatttaggtcaa 244  Q
    ||||||||||  |||||||||||||||| |||||||||||||    
T  11795931 aatactacctccggtcctatttataagagaaatttaggtcaa 11795972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 44126464 - 44126509
Alignment:
Q  18 tttgattctctctaataccaatttgggtaggctaatttaacttctt 63  Q
    |||||||||||||| | ||||||| |||||||||||||| ||||||    
T  44126464 tttgattctctctagtgccaatttaggtaggctaatttagcttctt 44126509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 244
Target Start/End: Original strand, 9981646 - 9981686
Alignment:
Q  204 atactacctttggtcctatttataagataaatttaggtcaa 244  Q
    |||||||||  |||||||||||||||| |||||||||||||    
T  9981646 atactacctccggtcctatttataagagaaatttaggtcaa 9981686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 244
Target Start/End: Original strand, 34042695 - 34042735
Alignment:
Q  204 atactacctttggtcctatttataagataaatttaggtcaa 244  Q
    |||||||||  |||||||||||||||| |||||||||||||    
T  34042695 atactacctccggtcctatttataagagaaatttaggtcaa 34042735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 244
Target Start/End: Original strand, 23782 - 23824
Alignment:
Q  202 taatactacctttggtcctatttataagataaatttaggtcaa 244  Q
    |||||||||||  |||||||||||||||| |||||||||||||    
T  23782 taatactacctccggtcctatttataagagaaatttaggtcaa 23824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 244
Target Start/End: Original strand, 3372118 - 3372160
Alignment:
Q  202 taatactacctttggtcctatttataagataaatttaggtcaa 244  Q
    |||||||||||  |||||||||||||||| |||||||||||||    
T  3372118 taatactacctccggtcctatttataagagaaatttaggtcaa 3372160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 244
Target Start/End: Original strand, 47833608 - 47833650
Alignment:
Q  202 taatactacctttggtcctatttataagataaatttaggtcaa 244  Q
    |||||||||||  |||||||||||||||| |||||||||||||    
T  47833608 taatactacctccggtcctatttataagagaaatttaggtcaa 47833650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 244
Target Start/End: Original strand, 48336260 - 48336302
Alignment:
Q  202 taatactacctttggtcctatttataagataaatttaggtcaa 244  Q
    |||||||||||  |||||||||||||||| |||||||||||||    
T  48336260 taatactacctccggtcctatttataagagaaatttaggtcaa 48336302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 244
Target Start/End: Complemental strand, 51894715 - 51894673
Alignment:
Q  202 taatactacctttggtcctatttataagataaatttaggtcaa 244  Q
    |||||||||||  |||||||||||||||| |||||||||||||    
T  51894715 taatactacctccggtcctatttataagaaaaatttaggtcaa 51894673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 244
Target Start/End: Original strand, 26231576 - 26231616
Alignment:
Q  204 atactacctttggtcctatttataagataaatttaggtcaa 244  Q
    |||||||||  |||||||||||||||| |||||||||||||    
T  26231576 atactacctccggtcctatttataagagaaatttaggtcaa 26231616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 244
Target Start/End: Original strand, 33551200 - 33551240
Alignment:
Q  204 atactacctttggtcctatttataagataaatttaggtcaa 244  Q
    |||||||||  |||||||||||||||| |||||||||||||    
T  33551200 atactacctccggtcctatttataagagaaatttaggtcaa 33551240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0482 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0482
Description:

Target: scaffold0482; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 244
Target Start/End: Original strand, 12858 - 12899
Alignment:
Q  203 aatactacctttggtcctatttataagataaatttaggtcaa 244  Q
    ||||||||||  |||||||||||||||| |||||||||||||    
T  12858 aatactacctccggtcctatttataagagaaatttaggtcaa 12899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 244
Target Start/End: Original strand, 49503 - 49544
Alignment:
Q  203 aatactacctttggtcctatttataagataaatttaggtcaa 244  Q
    ||||||||||  |||||||||||||||| |||||||||||||    
T  49503 aatactacctccggtcctatttataagagaaatttaggtcaa 49544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University