View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10468_low_44 (Length: 243)
Name: NF10468_low_44
Description: NF10468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10468_low_44 |
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| [»] scaffold0113 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 74 - 225
Target Start/End: Original strand, 41899280 - 41899430
Alignment:
| Q |
74 |
acatgcaatccgaaaatgaaattttgatttagaaagtgcgagacataannnnnnnnatctaaatggtttgaaataaatcatgtgtatatacttatgccta |
173 |
Q |
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| T |
41899280 |
acatgcaatccgaaaatgaaattttgatttagaaagtgtgagacataattttttt-atctaaatggtttgaattaaatcatgtgtatatacttatgccta |
41899378 |
T |
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| Q |
174 |
gacatgaagttatgtttgcattcctatcattgatatggtcacatgtcattga |
225 |
Q |
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| T |
41899379 |
gacatgaagttatgtttgcattcctatcattgatatggtcacatgtcattga |
41899430 |
T |
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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 119
Target Start/End: Original strand, 32460178 - 32460223
Alignment:
| Q |
74 |
acatgcaatccgaaaatgaaattttgatttagaaagtgcgagacat |
119 |
Q |
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| T |
32460178 |
acatgcaattcgaaaatgatattttgatttagaaagtgcaagacat |
32460223 |
T |
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Target: scaffold0113 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0113
Description:
Target: scaffold0113; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 76 - 119
Target Start/End: Complemental strand, 21426 - 21383
Alignment:
| Q |
76 |
atgcaatccgaaaatgaaattttgatttagaaagtgcgagacat |
119 |
Q |
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| T |
21426 |
atgcaatccaaaaatgatattttgatttagaaagtgcaagacat |
21383 |
T |
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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 117
Target Start/End: Complemental strand, 8415229 - 8415189
Alignment:
| Q |
77 |
tgcaatccgaaaatgaaattttgatttagaaagtgcgagac |
117 |
Q |
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| T |
8415229 |
tgcaatccaaaaataatattttgatttagaaagtgcgagac |
8415189 |
T |
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