View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10468_low_45 (Length: 241)
Name: NF10468_low_45
Description: NF10468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10468_low_45 |
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Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 16 - 230
Target Start/End: Complemental strand, 36595660 - 36595446
Alignment:
| Q |
16 |
cagttgcaaccgcccaaagaagggacaatatccttagcttatggtctaaacaaatgaaaccattaaataattgtattgaattgaatgaatgttttctcaa |
115 |
Q |
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| T |
36595660 |
cagttgcaaccgcccaaagaagggacaatatccttagcttatggtctaaaccaatgaaaccattaaataattgtattgaattgaatgaatgttttctcaa |
36595561 |
T |
|
| Q |
116 |
ccgaaatggaggtgatgtgatttatgtctactactgttgcccaataaattattgtcacacaaggacctaacaagttcgtgtgaaacattacacaaccata |
215 |
Q |
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| T |
36595560 |
ccgaaatggaggtgatgtgatttatgtctactactgttgcccaataaattattgtcacacaaggacctaacaagttcgtgtgaaacattacacaaccata |
36595461 |
T |
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| Q |
216 |
tcatcttttcttcat |
230 |
Q |
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|||| |||||||||| |
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| T |
36595460 |
tcattttttcttcat |
36595446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 31 - 96
Target Start/End: Original strand, 2931904 - 2931969
Alignment:
| Q |
31 |
aaagaagggacaatatccttagcttatggtctaaacaaatgaaaccattaaataattgtattgaat |
96 |
Q |
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|||||||||||||||||||||| | |||||||||| || ||||||||||||||||| ||||||| |
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| T |
2931904 |
aaagaagggacaatatccttagatcatggtctaaatcaacaaaaccattaaataattgaattgaat |
2931969 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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