View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10468_low_5 (Length: 475)
Name: NF10468_low_5
Description: NF10468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10468_low_5 |
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| [»] scaffold0009 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 18 - 458
Target Start/End: Complemental strand, 17512924 - 17512483
Alignment:
| Q |
18 |
acatcaaatgcataaactagttcatgcataagagcacactctaaatatcacaatatttatagacaatataatcagtcacaactatactcattcccacaca |
117 |
Q |
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| T |
17512924 |
acatcaaatgcataaactagttcatgcataagagcacactctaaatatcacaatatttatagacaatataatcagtcacaactatactcattcccacaca |
17512825 |
T |
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| Q |
118 |
atttatttaattttt-cttaaaattctaaaatggagaaacttccaattattggcacattcagctccatcacaagatcaataaaatattcagagatttgta |
216 |
Q |
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| T |
17512824 |
atttatttatttttttcttaaaattctgaaatggagaaacttccaattattggcacattcagctccatgacaagatcaataaaatattcagaaatttgta |
17512725 |
T |
|
| Q |
217 |
agagattttttcnnnnnnntaggtaatcaaatttgttcctctactttacgtaaaaatctcacaaaaatttgttttgtagattttcaaccaaaatcataac |
316 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17512724 |
agagattttttaaaaaaaataggtaatcaaatttgttcctctactttacgtaaaaatctcacaaaaatttgttttgtagattttcaaccaaaatcataac |
17512625 |
T |
|
| Q |
317 |
aaggtatacttttcaatgaaagcttcaagtttatgaaccagtatattaccctataaaaatttcacataatatttttaagctataatcaatacttcctcgg |
416 |
Q |
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| T |
17512624 |
aaggtatacttttcaatgaaagcttcaagtttatgaaccagtatattaccctataaaaatttcacataatatttttaagctataatcaatacttcctcgg |
17512525 |
T |
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| Q |
417 |
cagaacttttcatataaatatttggcttaattgcagttttga |
458 |
Q |
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| T |
17512524 |
tagaacttttcatataaatatttggcttaattgcagttttga |
17512483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 20 - 410
Target Start/End: Original strand, 1079 - 1472
Alignment:
| Q |
20 |
atcaaatgcataaactagttcatgcataagagcacactctaaatatcacaatatttatagacaatataa----tcagtcacaactatactcattcccaca |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |
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| T |
1079 |
atcaaatgcataaactagttcatgcataagagcacactccaaatatcacaatatttatagacaatataaataatgagtcacaactatactcattcccaca |
1178 |
T |
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| Q |
116 |
caatttatttaatttttcttaaaattctaaaatggagaaacttccaattattggcacattcagctccatcacaagatcaataaaatattcagagatttgt |
215 |
Q |
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|||||| || ||||||||||||||||| ||||||||||||||| |||||||| | ||||||||||||| ||||||||||||||||||||||| |||||| |
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| T |
1179 |
aaatttaatttatttttcttaaaattctgaaatggagaaacttc-aattattgtcgcattcagctccatgacaagatcaataaaatattcagaaatttgt |
1277 |
T |
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| Q |
216 |
aagagattttttcnnnnnnntaggtaatcaaatttgttcctctactttacgtaaaaatctcacaaaaatttgttttgtagattttcaaccaaaatcataa |
315 |
Q |
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| T |
1278 |
aagagaatttttctaaaaaataggtaaccaaatttgttcctctactttacgtaaaaatctcacaaaaatttgttttgtagattttcaaccaaaatcataa |
1377 |
T |
|
| Q |
316 |
caaggtatacttttcaatgaaagcttcaagtttatgaaccagtatattaccctataaaaatttcacataatatttttaagctataatcaatactt |
410 |
Q |
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| T |
1378 |
caaggtatacttttccatgaaagcttcaagtttatgaaccactatgttaccctataaaaatttcacataatatttttaagctataatcaatactt |
1472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 91; Significance: 7e-44; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 19 - 439
Target Start/End: Complemental strand, 29361144 - 29360736
Alignment:
| Q |
19 |
catcaaatgcataaactagttcatgcataagagcacactctaaatatcacaatatttatagacaatataatc--agtcacaactatactcattcccacac |
116 |
Q |
| |
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|||||||||||||||||||||||||| |||||||| || ||| |||||||| |||||||| ||||||| | ||||||| ||||||||||||||||| |
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| T |
29361144 |
catcaaatgcataaactagttcatgc-taagagcattgtccaaaaatcacaatgtttatagagaatataaccccagtcacagctatactcattcccacat |
29361046 |
T |
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| Q |
117 |
aatttatttaatttttcttaaaattctaaaatggagaaacttccaattattggcacattcagctccatcacaagatcaataaaatattcagagatttgta |
216 |
Q |
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||| ||||| ||||||||||| | | ||||| |||| || |||||| || ||| ||| ||| | |||| || ||||||||||| | ||| | | |
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| T |
29361045 |
aatatattt-----ttcttaaaattgtgagatggaactacttacatttattgtcatatttagc--catgataagaccagtaaaatattcaaaaattagga |
29360953 |
T |
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| Q |
217 |
agagattttttcnnnnnnntaggtaatcaaatttgttcctctactttacgtaaaaatctcacaaaaatttgttttgtagattttcaaccaaaatcataac |
316 |
Q |
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||||| |||| | |||||||| |||||| |||||| ||| |||||| ||||||||||||||| ||||| ||||||||||||||||||||||| |
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| T |
29360952 |
agagagttttcctaaaaagtaggtaattaaatttcggcctctatttttcgtaaagatctcacaaaaatttattttg-agattttcaaccaaaatcataac |
29360854 |
T |
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| Q |
317 |
aaggtatacttttcaatgaaagcttcaagtttatgaaccagtatattaccctataaaaatttcacataatatttttaagctataatcaatacttcctcgg |
416 |
Q |
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|| ||||| ||| || ||| ||| |||||||||| || ||||||| ||||| |||||||||||||| |||||||||||||||||||||||| | |
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| T |
29360853 |
aatgtatagtttatcataaaaatttc----ttatgaaccactacattacccagtaaaa-tttcacataatattcttaagctataatcaatacttcctcag |
29360759 |
T |
|
| Q |
417 |
cagaacttttcatataaatattt |
439 |
Q |
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| |||| ||||||||||||||| |
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| T |
29360758 |
taaaactattcatataaatattt |
29360736 |
T |
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