View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10468_low_53 (Length: 239)
Name: NF10468_low_53
Description: NF10468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10468_low_53 |
 | |
|
| [»] scaffold0070 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 25384527 - 25384749
Alignment:
| Q |
1 |
cacaaagtttagtgcatgtagttggtgcacaatgtgtgtaactgtgattttaatgaactcaaggatatcaaaataaagattctaagatagcattaaacaa |
100 |
Q |
| |
|
|||||||||||| |||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
25384527 |
cacaaagtttagcgcatgtagttggagcacaatgtgtgtaactgtgattttagtgaactcaaggatatcaaaataaagattcttagatagcattaaacaa |
25384626 |
T |
|
| Q |
101 |
caagtaaactcttcaatttctcttgaggcatactatacgtttgtctgttgctacaaaacagagttaagaactcatgcattgatcgtgcaacagagtccca |
200 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
25384627 |
caagtaaactcttcaatttttcttgaggcatactatacgtttgtctgttgctacaaaacagagttaataactcatgcattgatcgtgcaacagagtccca |
25384726 |
T |
|
| Q |
201 |
tataaatccaacattgtcgctag |
223 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
25384727 |
tataaatccaacattgtcgctag |
25384749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 100 - 167
Target Start/End: Original strand, 25692823 - 25692890
Alignment:
| Q |
100 |
acaagtaaactcttcaatttctcttgaggcatactatacgtttgtctgttgctacaaaacagagttaa |
167 |
Q |
| |
|
|||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25692823 |
acaagtaaactcttaaatttttgttgaggcatactatacgtttgtctgttgctacaaaacagagttaa |
25692890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 80
Target Start/End: Original strand, 25488446 - 25488499
Alignment:
| Q |
27 |
gcacaatgtgtgtaactgtgattttaatgaactcaaggatatcaaaataaagat |
80 |
Q |
| |
|
||||||||||| | ||||||| |||| | ||||| ||||||||||||||||||| |
|
|
| T |
25488446 |
gcacaatgtgtctgactgtgagtttagtaaactcgaggatatcaaaataaagat |
25488499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0070 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: scaffold0070
Description:
Target: scaffold0070; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 27 - 167
Target Start/End: Complemental strand, 19008 - 18863
Alignment:
| Q |
27 |
gcacaatgtgtgtaactgtgattttaatgaactcaaggatatcaaaataaagattctaagatagcattaaacaacaagtaaactctt-caatttctcttg |
125 |
Q |
| |
|
|||||||||||||||||| | |||| |||||||||||||||||||||||||||||| | |||||||||||| |||||||||||||| ||||| ||||| |
|
|
| T |
19008 |
gcacaatgtgtgtaactgag--tttagtgaactcaaggatatcaaaataaagattcttaaatagcattaaaccacaagtaaactcttaaaatttttcttg |
18911 |
T |
|
| Q |
126 |
aggcatactatac------gtttgtctgttgctacaaaacagagttaa |
167 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
18910 |
aggcatactatacatgggtatttgtctgttgctacaaaacagagttaa |
18863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 185 - 218
Target Start/End: Complemental strand, 30163037 - 30163004
Alignment:
| Q |
185 |
gtgcaacagagtcccatataaatccaacattgtc |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
30163037 |
gtgcaacagagtcccatataaatccaacattgtc |
30163004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 87 - 132
Target Start/End: Complemental strand, 30163150 - 30163105
Alignment:
| Q |
87 |
atagcattaaacaacaagtaaactcttcaatttctcttgaggcata |
132 |
Q |
| |
|
|||||||||||| ||||||||||||| |||||| |||||||||||| |
|
|
| T |
30163150 |
atagcattaaaccacaagtaaactctccaatttttcttgaggcata |
30163105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 77
Target Start/End: Original strand, 20592190 - 20592238
Alignment:
| Q |
27 |
gcacaatgtgtgtaactgtgattttaatgaactcaaggatatcaaaataaa |
77 |
Q |
| |
|
|||||||||||||||||| | |||| |||||||||||||||||||||||| |
|
|
| T |
20592190 |
gcacaatgtgtgtaactgag--tttagtgaactcaaggatatcaaaataaa |
20592238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University