View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10468_low_55 (Length: 238)
Name: NF10468_low_55
Description: NF10468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10468_low_55 |
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Alignment Details
Target: chr3 (Bit Score: 184; Significance: 1e-99; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 1659278 - 1659505
Alignment:
| Q |
1 |
aaaaagaaacctcttttttcttatggt-----gagcgggctttgcaccttttatggacgttaaggtcacattgtagatacttgctataagaagcattgat |
95 |
Q |
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| T |
1659278 |
aaaaagaaacctcttttttcttatggttataagagcgggctttgcaccttttatgcatgttaaggtcacattgtagatacttgttataagaagcatggat |
1659377 |
T |
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| Q |
96 |
ttccaccaaactttgattgaatttcttctgtgaataatacagaatcatcgcctgataatgtgtgtgtggctagaaatgttgaagagccaccaaaagttca |
195 |
Q |
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| T |
1659378 |
ttccaccaaactttggtcgaatttcttctgtgaataatacagaatcatcgcctgataatgtgtgtgtggctagaaatgttgaagagccaccaaaagttca |
1659477 |
T |
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| Q |
196 |
atcatcttcagaaccaatgtgttgtaat |
223 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
1659478 |
atcatcttcagaaccaatgtgttgtaat |
1659505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 62 - 215
Target Start/End: Original strand, 28073176 - 28073329
Alignment:
| Q |
62 |
cacattgtagatacttgctataagaagcattgatttccaccaaactttgattgaatttcttctgtgaataatacagaatcatcgcctgataatgtgtgtg |
161 |
Q |
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| T |
28073176 |
cacactgttgatacttgttataagaagcatggattcccaccaaattttggtcaaaattcttctgtcaataatgtagaatcattgcttgataatgtgcatg |
28073275 |
T |
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| Q |
162 |
tggctagaaatgttgaagagccaccaaaagttcaatcatcttcagaaccaatgt |
215 |
Q |
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| T |
28073276 |
tggctgaaaacgttgaagagccatcaaaagttcaatcatcttcgggaccaatgt |
28073329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 62 - 166
Target Start/End: Original strand, 28062751 - 28062855
Alignment:
| Q |
62 |
cacattgtagatacttgctataagaagcattgatttccaccaaactttgattgaatttcttctgtgaataatacagaatcatcgcctgataatgtgtgtg |
161 |
Q |
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| T |
28062751 |
cacactgttgatacttgttataagaagcatggattcccaccaaattttggtcaaaattcttctgtcaataatgtagaatcattgcttgataatgtgcatg |
28062850 |
T |
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| Q |
162 |
tggct |
166 |
Q |
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||||| |
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| T |
28062851 |
tggct |
28062855 |
T |
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