View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10468_low_57 (Length: 229)
Name: NF10468_low_57
Description: NF10468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10468_low_57 |
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Alignment Details
Target: chr8 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 893741 - 893963
Alignment:
| Q |
1 |
cgtagttgtttcagttaacacaaagcattcaaggaagttcaagtttacaattatattacatataacaaaccactttgactcttttctcctaatgcatgaa |
100 |
Q |
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| T |
893741 |
cgtagttgtttcagttaacacaaatcattcaaggaagttcaagtttacaatgatattacatataacaaaccactttgactcttttctcctaatgcatgaa |
893840 |
T |
|
| Q |
101 |
atggtaaaagcaagacaaatagttcttccaaaataaaaactcaatagctaaatgcatgtcaagataggaaaggcaaaggaaaactttaggatgcatatgc |
200 |
Q |
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| T |
893841 |
atggtaaaagcaagacaaatagttcttccaaaataaaaactcaatagctaaatgcatgtcaagataggaaaggcaaaggaaaacttgaggatgcatatgc |
893940 |
T |
|
| Q |
201 |
cttaagtttctataggtggaatg |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
893941 |
cttaagtttctataggtggaatg |
893963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 122 - 178
Target Start/End: Complemental strand, 901342 - 901286
Alignment:
| Q |
122 |
gttcttccaaaataaaaactcaatagctaaatgcatgtcaagataggaaaggcaaag |
178 |
Q |
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|||||||| || | |||| |||||||||||||||||||||||| ||||||||||||| |
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| T |
901342 |
gttcttcccaattgaaaattcaatagctaaatgcatgtcaagaaaggaaaggcaaag |
901286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 123 - 223
Target Start/End: Original strand, 51190242 - 51190336
Alignment:
| Q |
123 |
ttcttccaaaataaaaactcaatagctaaatgcatgtcaagataggaaaggcaaaggaaaactttaggatgcatatgccttaagtttctataggtggaat |
222 |
Q |
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||||||| ||||||||| |||||||||||||||||||||||||||||||||| |||||| |||||| | || |||||||||||||||||||||| |
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| T |
51190242 |
ttcttcccaaataaaaagtcaatagctaaatgcatgtcaagataggaaaggc------aaacttgaggatgtttgtgacttaagtttctataggtggaat |
51190335 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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