View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10468_low_58 (Length: 227)
Name: NF10468_low_58
Description: NF10468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10468_low_58 |
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| [»] scaffold0393 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 30598471 - 30598712
Alignment:
| Q |
1 |
ctctgtgtaaggccatacactttcttgttgtgtttttatttttcttattcaattaattataagcattcttatcactctaagctgaagtatacaataaatg |
100 |
Q |
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| T |
30598471 |
ctctgtgtaaggccatacactttcttgctgtgtttttatttttcttattcaattaattataagcattcttatcactctaagctgaagtatacaataaatg |
30598570 |
T |
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| Q |
101 |
tacattgtatgtgtgcgtgtgtttttcagtgtaaac------------------ttgctgcataatttggatcatagattgaagtcaaggtatctgatga |
182 |
Q |
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| T |
30598571 |
tgcattgtatgtgtgcgtgtgtttttcagtgtaaacatcaattagctgcaagatttgctgcataattaggatcatagattgaagtcaaggtatctgatga |
30598670 |
T |
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| Q |
183 |
ggaattagctttgttgctatccaaactatagcccttttgtta |
224 |
Q |
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| T |
30598671 |
ggaattagctttgttgctatccaaactatagcccttttgtta |
30598712 |
T |
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Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 135 - 220
Target Start/End: Original strand, 2410587 - 2410672
Alignment:
| Q |
135 |
acttgctgcataatttggatcatagattgaagtcaaggtatctgatgaggaattagctttgttgctatccaaactatagccctttt |
220 |
Q |
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| T |
2410587 |
acttgctgcatcattaggatcatacgtcgaagtcaaggtatctgatgaagaattagctttgttgctatctaaaatatagccctttt |
2410672 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 2410427 - 2410565
Alignment:
| Q |
1 |
ctctgtgtaaggccata--cactttcttgttgtgtttttattt-ttcttattcaattaattataagcattctta---tcactctaa-gctgaagtataca |
93 |
Q |
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| T |
2410427 |
ctctgtgtaagaccatatacacttccttgttgtcttttattttcttcatattcaattcattataaacattcttagtatcattctagtgctgaagtataca |
2410526 |
T |
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| Q |
94 |
ataaatgtacattgtatgtgtgcgtgtg-tttttcagtg |
131 |
Q |
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| T |
2410527 |
atcaatgtgcattgtgtgcgtgtgtgtgttttttcagtg |
2410565 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0393 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0393
Description:
Target: scaffold0393; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 139 - 226
Target Start/End: Original strand, 12968 - 13056
Alignment:
| Q |
139 |
gctgcataatttggatcatagattgaagtcaaggtatctgatgaggaattagc-tttgttgctatccaaactatagcccttttgttatt |
226 |
Q |
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| T |
12968 |
gctgcatcattaggatcatatgtcgaagtcaaggtatctgatgaggaattagcttttgttgctatctaaaatatagcccttttattatt |
13056 |
T |
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