View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10468_low_60 (Length: 220)
Name: NF10468_low_60
Description: NF10468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10468_low_60 |
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Alignment Details
Target: chr4 (Bit Score: 106; Significance: 3e-53; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 20 - 199
Target Start/End: Original strand, 21827531 - 21827714
Alignment:
| Q |
20 |
agacaacctttctc-catctgctatttcttgtatattcgtcattccttcattaactagtgaaacctttggttcttccttagaggtagcagatgaagtgtg |
118 |
Q |
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| T |
21827531 |
agacaagctttctctcatccgctatttcttgtatattcatcattccgtcattaactagtgaaacctttggttctcccttagaggtagcagataaagttgg |
21827630 |
T |
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| Q |
119 |
---tggtatcttgggttgtggacaacatgaagactccatatctacaaaataaaaccaataaagtaagatccaaatcatgattgt |
199 |
Q |
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| T |
21827631 |
aaatggcaacttggattgtggacaacatgaagactccatatctacaaaataaaatcaaataagtaagatccaaatcatgattgt |
21827714 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 15 - 199
Target Start/End: Original strand, 39603270 - 39603458
Alignment:
| Q |
15 |
agcagagacaacctttctc-catctgctatttcttgtatattcgtcattccttcattaactagtgaaacctttggttcttccttagaggtagcagat-ga |
112 |
Q |
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| T |
39603270 |
agcagagacaacctttctctcatctgctatttcttttatattcatcattttgtcattaactagtgaaacctttggttctcccttagaggtagcagataaa |
39603369 |
T |
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| Q |
113 |
agtg--tgtggtatcttgggttgtggacaacatgaagactccatatctacaaaataaaaccaataaagtaagatccaaatcatgattgt |
199 |
Q |
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| T |
39603370 |
agtggaaatggtaacttgggttgtggacaacgtgaaaactccatatctacaaaataaaatcaaataagtaagatctaaatcatgattgt |
39603458 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 6e-30; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 15 - 169
Target Start/End: Original strand, 43022162 - 43022320
Alignment:
| Q |
15 |
agcagagacaacctttctc-catctgctatttcttgtatattcgtcattccttcattaactagtgaaacctttggttcttccttagaggtagcagatgaa |
113 |
Q |
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|||||||||| ||||| || || | |||||||| |||||||| |||||||||||||||||| ||||||||||||||||| |||| ||||||||||||||| |
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| T |
43022162 |
agcagagacatcctttatctcagcagctatttcctgtatatttgtcattccttcattaacttgtgaaacctttggttctcccttggaggtagcagatgaa |
43022261 |
T |
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| Q |
114 |
gtgtg----tggtatcttgggttgtggacaacatgaagactccatatctacaaaataaaa |
169 |
Q |
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| T |
43022262 |
gt-tgaagatggtatcttgggctgtgggcaacgagaagactccatatctggaaaataaaa |
43022320 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 40 - 169
Target Start/End: Original strand, 42811808 - 42811940
Alignment:
| Q |
40 |
ctatttcttgtatattcgtcattccttcattaactagtgaaacctttggttcttccttagaggtagcagatgaagtgtg---tggtatcttgggttgtgg |
136 |
Q |
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| T |
42811808 |
ctatttcctgtatatttgccattccttcattaacttgtgaaacctttggttctcccttggaggttgcagatgaagttggagatggtatcttgggctgtgg |
42811907 |
T |
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| Q |
137 |
acaacatgaagactccatatctacaaaataaaa |
169 |
Q |
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| T |
42811908 |
gcaacgagaagacaacatatctggaaaataaaa |
42811940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 84 - 169
Target Start/End: Original strand, 35060898 - 35060986
Alignment:
| Q |
84 |
tttggttcttccttagaggtagcagatgaagtgtg---tggtatcttgggttgtggacaacatgaagactccatatctacaaaataaaa |
169 |
Q |
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||||||||| |||| ||||||||||||||||| | |||||||||||||||||| |||| ||||||||||||||| ||||||||| |
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| T |
35060898 |
tttggttctcccttggaggtagcagatgaagttggagatggtatcttgggttgtgggcaacgagaagactccatatctggaaaataaaa |
35060986 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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