View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10468_low_61 (Length: 213)
Name: NF10468_low_61
Description: NF10468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10468_low_61 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 45598138 - 45598350
Alignment:
| Q |
1 |
atccaaaacaataggaacaaactcacaccaaataaccaaacctaaaaagtgnnnnnnnnnnnnnnnnaatggcacaaaaataaaaacagaatatagatga |
100 |
Q |
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| T |
45598138 |
atccaaaacaataggaacaaactcacaccaaataaccaaacctaaaaagtgtttttgtttttgttttaatggcacaaaaataaaaacagaatatagatga |
45598237 |
T |
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| Q |
101 |
attattatgagaaaaagaagaaagatactaaccatgtgaatcttttcattgaagttattaggatcagttggagaagttgatacgtgcacatgaacaaaga |
200 |
Q |
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| T |
45598238 |
attattatgagaaaaagaagaaagatactaaccatgtgaatcttttcattgaagttattaggatcagttggagaagttgatacgtgcacatgaacaaaga |
45598337 |
T |
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| Q |
201 |
agaaacaagtaat |
213 |
Q |
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| T |
45598338 |
agaaacaagtaat |
45598350 |
T |
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Target: chr2 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 133 - 194
Target Start/End: Original strand, 19398246 - 19398307
Alignment:
| Q |
133 |
catgtgaatcttttcattgaagttattaggatcagttggagaagttgatacgtgcacatgaa |
194 |
Q |
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| T |
19398246 |
catgtgaatcttttcattgaagtgattaggatcagttggagaagttgatacgtgcacatgaa |
19398307 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 3e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 133 - 194
Target Start/End: Original strand, 42794449 - 42794510
Alignment:
| Q |
133 |
catgtgaatcttttcattgaagttattaggatcagttggagaagttgatacgtgcacatgaa |
194 |
Q |
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| T |
42794449 |
catgtgaatcttttcattgaagtgattaggatcagttggagaagttgatatgtgcacatgaa |
42794510 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 5e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 135 - 194
Target Start/End: Original strand, 13510284 - 13510343
Alignment:
| Q |
135 |
tgtgaatcttttcattgaagttattaggatcagttggagaagttgatacgtgcacatgaa |
194 |
Q |
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| T |
13510284 |
tgtgaatcttttcattgaagtgattaggatcggttggagaagttgatacgtgcacatgaa |
13510343 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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