View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10468_low_62 (Length: 211)

Name: NF10468_low_62
Description: NF10468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10468_low_62
NF10468_low_62
[»] chr5 (12 HSPs)
chr5 (21-193)||(5911099-5911273)
chr5 (21-193)||(5918047-5918221)
chr5 (21-193)||(35417265-35417439)
chr5 (21-193)||(6751206-6751380)
chr5 (105-193)||(36100206-36100294)
chr5 (116-193)||(38486414-38486491)
chr5 (106-193)||(41194078-41194166)
chr5 (21-81)||(38486335-38486395)
chr5 (21-79)||(36100320-36100376)
chr5 (43-81)||(41194185-41194223)
chr5 (21-78)||(36361859-36361916)
chr5 (110-194)||(36361748-36361832)
[»] chr7 (5 HSPs)
chr7 (105-188)||(47018650-47018733)
chr7 (111-187)||(24189596-24189672)
chr7 (106-191)||(39510356-39510441)
chr7 (109-193)||(499661-499743)
chr7 (29-81)||(47018757-47018809)
[»] chr3 (12 HSPs)
chr3 (116-193)||(29672738-29672815)
chr3 (116-193)||(10567576-10567653)
chr3 (116-193)||(10570826-10570903)
chr3 (113-184)||(8547281-8547352)
chr3 (109-193)||(20283774-20283857)
chr3 (21-81)||(29672834-29672894)
chr3 (21-81)||(10567493-10567553)
chr3 (21-81)||(10570743-10570803)
chr3 (21-81)||(20283697-20283757)
chr3 (111-193)||(26464348-26464430)
chr3 (32-78)||(8547201-8547247)
chr3 (129-191)||(21560136-21560198)
[»] chr4 (13 HSPs)
chr4 (105-193)||(236211-236301)
chr4 (105-193)||(47113234-47113324)
chr4 (116-193)||(39220269-39220347)
chr4 (116-193)||(39226795-39226873)
chr4 (133-193)||(40052557-40052617)
chr4 (133-193)||(40053669-40053729)
chr4 (21-81)||(40052661-40052721)
chr4 (21-81)||(40053565-40053625)
chr4 (21-81)||(39220184-39220244)
chr4 (21-81)||(39226709-39226769)
chr4 (29-81)||(236135-236187)
chr4 (106-193)||(34859419-34859506)
chr4 (21-66)||(47113360-47113405)
[»] chr1 (6 HSPs)
chr1 (116-193)||(16860325-16860402)
chr1 (23-81)||(16860421-16860479)
chr1 (106-186)||(26337749-26337829)
chr1 (106-193)||(40772345-40772430)
chr1 (156-193)||(19406099-19406136)
chr1 (21-81)||(26337846-26337904)
[»] chr2 (1 HSPs)
chr2 (118-193)||(20471530-20471608)
[»] chr8 (2 HSPs)
chr8 (122-181)||(21593425-21593484)
chr8 (21-81)||(21593345-21593405)


Alignment Details
Target: chr5 (Bit Score: 87; Significance: 7e-42; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 21 - 193
Target Start/End: Complemental strand, 5911273 - 5911099
Alignment:
Q  21 tcaacacattctatttgatagtagtgtgtgtgacctataaatagaccttaagtgatttgatnnnnnnnnnnnnnnnnnnnnnnngaatacaaaatagaaa 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                       ||||||||||||||||    
T  5911273 tcaacacattctatttgatagtagtgtgtgtgacctataaatagaccttaagtgatttgatcacaacatacaacacaacaacaagaatacaaaatagaaa 5911174  T
Q  121 tatgctctagttttct--agttccactactcaaaggttgagggtaagaattggtctcggtgtggatacacgtaga 193  Q
    |||||||||||||| |  |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  5911173 tatgctctagttttttttagttccactacttaaaggttgagggtaagaattggtctcggtgtggatacacgtaga 5911099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 21 - 193
Target Start/End: Complemental strand, 5918221 - 5918047
Alignment:
Q  21 tcaacacattctatttgatagtagtgtgtgtgacctataaatagaccttaagtgatttgatnnnnnnnnnnnnnnnnnnnnnnngaatacaaaatagaaa 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||                       ||||||||||||||||    
T  5918221 tcaacacattctatttgatagtagtgtgtgtgacctataaatagaccttaagtaatttgatcacaacatacaacacaacaacaagaatacaaaatagaaa 5918122  T
Q  121 tatgctctagttttct--agttccactactcaaaggttgagggtaagaattggtctcggtgtggatacacgtaga 193  Q
    |||||||||||||| |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5918121 tatgctctagttttttttagttccactactcaaaggttgagggtaagaattggtctcggtgtggatacacgtaga 5918047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 21 - 193
Target Start/End: Complemental strand, 35417439 - 35417265
Alignment:
Q  21 tcaacacattctatttgatagtagtgtgtgtgacctataaatagaccttaagtgatttgatnnnnnnnnnnnnnnnnnnnnnnngaatacaaaatagaaa 120  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||                       ||||||||||||||||    
T  35417439 tcaacacattctatttgatagtagtgtgtgtgatctataaatagaccttaagtgatttgatcaaaacacacaacacaacaacaagaatacaaaatagaaa 35417340  T
Q  121 tatgctctagttttct--agttccactactcaaaggttgagggtaagaattggtctcggtgtggatacacgtaga 193  Q
    |||||||||||||| |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35417339 tatgctctagttttttttagttccactactcaaaggttgagggtaagaattggtctcggtgtggatacacgtaga 35417265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 21 - 193
Target Start/End: Original strand, 6751206 - 6751380
Alignment:
Q  21 tcaacacattctatttgatagtagtgtgtgtgacctataaatagaccttaagtgatttgatnnnnnnnnnnnnnnnnnnnnnnngaatacaaaatagaaa 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                       |||||||||||| |||    
T  6751206 tcaacacattctatttgatagtagtgtgtgtgacctataaatagaccttaagtgatttgatcacaacacacaacacaacaacaagaatacaaaataaaaa 6751305  T
Q  121 tatgctctagttttct--agttccactactcaaaggttgagggtaagaattggtctcggtgtggatacacgtaga 193  Q
    |||||||||||||| |  |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  6751306 tatgctctagttttttttagttccactactcaaaggttgagggtaagaattggtctcggtgtggatacacataga 6751380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 105 - 193
Target Start/End: Complemental strand, 36100294 - 36100206
Alignment:
Q  105 gaatacaaaatagaaatatgctctagttttctagttccactactcaaaggttgagggtaagaattggtctcggtgtggatacacgtaga 193  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  36100294 gaatacaaaatagaaatatgttctagttttctagttccactactcaaaggttgagggtaagaattggtctcggtgtggatacatgtaga 36100206  T

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Target: chr5; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 116 - 193
Target Start/End: Original strand, 38486414 - 38486491
Alignment:
Q  116 agaaatatgctctagttttctagttccactactcaaaggttgagggtaagaattggtctcggtgtggatacacgtaga 193  Q
    |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38486414 agaaatatgctctagtttttcagttccactactcaaaggttgagggtaagaattggtctcggtgtggatacacgtaga 38486491  T

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Target: chr5; HSP #7
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 106 - 193
Target Start/End: Complemental strand, 41194166 - 41194078
Alignment:
Q  106 aatacaaaatagaaatatgctctagtttt-ctagttccactactcaaaggttgagggtaagaattggtctcggtgtggatacacgtaga 193  Q
    ||||||||| | ||||||||||||||||| || |||||||||||||||||||||| |||||||||| ||||||||| ||||||| ||||    
T  41194166 aatacaaaacataaatatgctctagtttttcttgttccactactcaaaggttgagagtaagaattgatctcggtgtagatacacttaga 41194078  T

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Target: chr5; HSP #8
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 21 - 81
Target Start/End: Original strand, 38486335 - 38486395
Alignment:
Q  21 tcaacacattctatttgatagtagtgtgtgtgacctataaatagaccttaagtgatttgat 81  Q
    ||||||||||||||||||||||| ||||||||||||||||||||| || ||||||||||||    
T  38486335 tcaacacattctatttgatagtaatgtgtgtgacctataaatagatctcaagtgatttgat 38486395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 21 - 79
Target Start/End: Complemental strand, 36100376 - 36100320
Alignment:
Q  21 tcaacacattctatttgatagtagtgtgtgtgacctataaatagaccttaagtgatttg 79  Q
    ||||||||||||||||||||||||||||||  | |||||||||||||||||||||||||    
T  36100376 tcaacacattctatttgatagtagtgtgtg--atctataaatagaccttaagtgatttg 36100320  T

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Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 81
Target Start/End: Complemental strand, 41194223 - 41194185
Alignment:
Q  43 agtgtgtgtgacctataaatagaccttaagtgatttgat 81  Q
    |||||||||||| |||||||| |||||||||||||||||    
T  41194223 agtgtgtgtgacttataaataaaccttaagtgatttgat 41194185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 21 - 78
Target Start/End: Complemental strand, 36361916 - 36361859
Alignment:
Q  21 tcaacacattctatttgatagtagtgtgtgtgacctataaatagaccttaagtgattt 78  Q
    ||||||| | ||||||||| |||||||||||| | |||||||||| ||||||| ||||    
T  36361916 tcaacacttcctatttgatggtagtgtgtgtggcttataaatagatcttaagtaattt 36361859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 194
Target Start/End: Complemental strand, 36361832 - 36361748
Alignment:
Q  110 caaaatagaaatatgctctagttttctagttccactactcaaaggttgagggtaagaattggtctcggtgtggatacacgtagat 194  Q
    ||||||| |||| || || |||||||| ||||||||||| |||  |||||||||||||  ||||| | |||  ||||||||||||    
T  36361832 caaaatataaatttgttcaagttttcttgttccactacttaaaaattgagggtaagaacgggtctggatgtaaatacacgtagat 36361748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 80; Significance: 1e-37; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 105 - 188
Target Start/End: Complemental strand, 47018733 - 47018650
Alignment:
Q  105 gaatacaaaatagaaatatgctctagttttctagttccactactcaaaggttgagggtaagaattggtctcggtgtggatacac 188  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  47018733 gaatacaaaatagaaatatgctctagttttctagttccactactcaaaggttgagggtaagaattgatctcggtgtggatacac 47018650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 111 - 187
Target Start/End: Original strand, 24189596 - 24189672
Alignment:
Q  111 aaaatagaaatatgctctagttttctagttccactactcaaaggttgagggtaagaattggtctcggtgtggataca 187  Q
    |||||| ||||||||||||||||||| ||||||||| |||||| |||| ||||||||||||||| ||||||||||||    
T  24189596 aaaatataaatatgctctagttttcttgttccactaatcaaagattgaaggtaagaattggtcttggtgtggataca 24189672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 106 - 191
Target Start/End: Complemental strand, 39510441 - 39510356
Alignment:
Q  106 aatacaaaatagaaatatgctctagttttctagttccactactcaaaggttgagggtaagaattggtctcggtgtggatacacgta 191  Q
    ||||||||||| || |||||||||||||| | |||| | ||||||||||||||  |||||||||||| ||| ||||||||||||||    
T  39510441 aatacaaaatacaattatgctctagtttttttgttctaatactcaaaggttgaatgtaagaattggtttcgatgtggatacacgta 39510356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 109 - 193
Target Start/End: Original strand, 499661 - 499743
Alignment:
Q  109 acaaaatagaaatatgctctagttttctagttccactactcaaaggttgagggtaagaattggtctcggtgtggatacacgtaga 193  Q
    |||||||| ||||||||   |||||||| |||||| ||||||||||||||| ||||||| ||||||  |||| |||| |||||||    
T  499661 acaaaatacaaatatgca--agttttcttgttccattactcaaaggttgagtgtaagaactggtcttagtgtagatatacgtaga 499743  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 81
Target Start/End: Complemental strand, 47018809 - 47018757
Alignment:
Q  29 ttctatttgatagtagtgtgtgtgacctataaatagaccttaagtgatttgat 81  Q
    |||||||||||||||||||||||  | | ||||||| ||||||||||||||||    
T  47018809 ttctatttgatagtagtgtgtgtatcttttaaataggccttaagtgatttgat 47018757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 116 - 193
Target Start/End: Complemental strand, 29672815 - 29672738
Alignment:
Q  116 agaaatatgctctagttttctagttccactactcaaaggttgagggtaagaattggtctcggtgtggatacacgtaga 193  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29672815 agaaatatgctctagttttctagttccactactcaaaggttgagggtaagaattggtctcggtgtggatacacgtaga 29672738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 116 - 193
Target Start/End: Original strand, 10567576 - 10567653
Alignment:
Q  116 agaaatatgctctagttttctagttccactactcaaaggttgagggtaagaattggtctcggtgtggatacacgtaga 193  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  10567576 agaaatatgctctagttttctagttccactactcaaaggttgagagtaaaaattggtctcggtgtggatacacgtaga 10567653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 116 - 193
Target Start/End: Original strand, 10570826 - 10570903
Alignment:
Q  116 agaaatatgctctagttttctagttccactactcaaaggttgagggtaagaattggtctcggtgtggatacacgtaga 193  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  10570826 agaaatatgctctagttttctagttccactactcaaaggttgagagtaaaaattggtctcggtgtggatacacgtaga 10570903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 113 - 184
Target Start/End: Original strand, 8547281 - 8547352
Alignment:
Q  113 aatagaaatatgctctagttttctagttccactactcaaaggttgagggtaagaattggtctcggtgtggat 184  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  8547281 aatagaaatatgctctagttttctagttcctctactcaaaggttgagggtaagaattggtctcggtgtggat 8547352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 109 - 193
Target Start/End: Original strand, 20283774 - 20283857
Alignment:
Q  109 acaaaatagaaatatgctctagttttctagttccactactcaaaggttgagggtaagaattggtctcggtgtggatacacgtaga 193  Q
    |||||||| ||||||||||||||||||| |||| |||||||||||| |||||||||||||||||||||||||||||| |||||||    
T  20283774 acaaaata-aaatatgctctagttttcttgttcaactactcaaaggctgagggtaagaattggtctcggtgtggatatacgtaga 20283857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 21 - 81
Target Start/End: Complemental strand, 29672894 - 29672834
Alignment:
Q  21 tcaacacattctatttgatagtagtgtgtgtgacctataaatagaccttaagtgatttgat 81  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29672894 tcaacacattctatttgatagtagtgtgtgtgacctataaatagaccttaagtgatttgat 29672834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 21 - 81
Target Start/End: Original strand, 10567493 - 10567553
Alignment:
Q  21 tcaacacattctatttgatagtagtgtgtgtgacctataaatagaccttaagtgatttgat 81  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10567493 tcaacacattttatttgatagtagtgtgtgtgacctataaatagaccttaagtgatttgat 10567553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 21 - 81
Target Start/End: Original strand, 10570743 - 10570803
Alignment:
Q  21 tcaacacattctatttgatagtagtgtgtgtgacctataaatagaccttaagtgatttgat 81  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10570743 tcaacacattttatttgatagtagtgtgtgtgacctataaatagaccttaagtgatttgat 10570803  T

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Target: chr3; HSP #9
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 21 - 81
Target Start/End: Original strand, 20283697 - 20283757
Alignment:
Q  21 tcaacacattctatttgatagtagtgtgtgtgacctataaatagaccttaagtgatttgat 81  Q
    |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  20283697 tcaacacattctatttgatagtagtgtgtgtgacttataaatagacattaagtgatttgat 20283757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 111 - 193
Target Start/End: Original strand, 26464348 - 26464430
Alignment:
Q  111 aaaatagaaatatgctctagt-tttctagttccactactcaaaggttgagggtaagaattggtctcggtgtggatacacgtaga 193  Q
    |||||| |||||||||||||| ||||| ||||||||||||||| |||||  ||||||||| ||||| |||||||||||||||||    
T  26464348 aaaatacaaatatgctctagtatttct-gttccactactcaaaagttgaaagtaagaatttgtctcagtgtggatacacgtaga 26464430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 32 - 78
Target Start/End: Original strand, 8547201 - 8547247
Alignment:
Q  32 tatttgatagtagtgtgtgtgacctataaatagaccttaagtgattt 78  Q
    ||||||||||||||||||||| | |||||||||||||||||||||||    
T  8547201 tatttgatagtagtgtgtgtggcttataaatagaccttaagtgattt 8547247  T

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Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 129 - 191
Target Start/End: Complemental strand, 21560198 - 21560136
Alignment:
Q  129 agttttctagttccactactcaaaggttgagggtaagaattggtctcggtgtggatacacgta 191  Q
    |||||| | ||| ||||| |||||| ||||||||||||||||||||||| |||||||||||||    
T  21560198 agtttttttgtttcactattcaaagattgagggtaagaattggtctcggcgtggatacacgta 21560136  T

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Target: chr4 (Bit Score: 76; Significance: 3e-35; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 105 - 193
Target Start/End: Original strand, 236211 - 236301
Alignment:
Q  105 gaatacaaaatagaaatatgctctagttttct--agttccactactcaaaggttgagggtaagaattggtctcggtgtggatacacgtaga 193  Q
    |||||||||||||||||||||||||||||| |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  236211 gaatacaaaatagaaatatgctctagttttttttagttccactactcaaaggttgagggtaagaattggtctcggtgtggatacacgtaga 236301  T

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Target: chr4; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 105 - 193
Target Start/End: Complemental strand, 47113324 - 47113234
Alignment:
Q  105 gaatacaaaatagaaatatgctcta--gttttctagttccactactcaaaggttgagggtaagaattggtctcggtgtggatacacgtaga 193  Q
    |||||||||||||||||||||||||  ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  47113324 gaatacaaaatagaaatatgctctatagttttttagttccactactcaaaggttgagggtaagaattggtctcggtgtggatacacataga 47113234  T

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Target: chr4; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 116 - 193
Target Start/End: Original strand, 39220269 - 39220347
Alignment:
Q  116 agaaatatgctctagtttt-ctagttccactactcaaaggttgagggtaagaattggtctcggtgtggatacacgtaga 193  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  39220269 agaaatatgctctagtttttctagttccactactcaaaggttgagagtaagaattggtctcggtgtggatacacgtaga 39220347  T

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Target: chr4; HSP #4
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 116 - 193
Target Start/End: Original strand, 39226795 - 39226873
Alignment:
Q  116 agaaatatgctctagtttt-ctagttccactactcaaaggttgagggtaagaattggtctcggtgtggatacacgtaga 193  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  39226795 agaaatatgctctagtttttctagttccactactcaaaggttgagagtaagaattggtctcggtgtggatacacgtaga 39226873  T

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Target: chr4; HSP #5
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 133 - 193
Target Start/End: Complemental strand, 40052617 - 40052557
Alignment:
Q  133 ttctagttccactactcaaaggttgagggtaagaattggtctcggtgtggatacacgtaga 193  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40052617 ttctagttccactactcaaaggttgagggtaagaattggtctcggtgtggatacacgtaga 40052557  T

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Target: chr4; HSP #6
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 133 - 193
Target Start/End: Original strand, 40053669 - 40053729
Alignment:
Q  133 ttctagttccactactcaaaggttgagggtaagaattggtctcggtgtggatacacgtaga 193  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40053669 ttctagttccactactcaaaggttgagggtaagaattggtctcggtgtggatacacgtaga 40053729  T

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Target: chr4; HSP #7
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 21 - 81
Target Start/End: Complemental strand, 40052721 - 40052661
Alignment:
Q  21 tcaacacattctatttgatagtagtgtgtgtgacctataaatagaccttaagtgatttgat 81  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  40052721 tcaacacattctatttgatagtagtgtgtgtgacctataaatagacctcaagtgatttgat 40052661  T

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Target: chr4; HSP #8
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 21 - 81
Target Start/End: Original strand, 40053565 - 40053625
Alignment:
Q  21 tcaacacattctatttgatagtagtgtgtgtgacctataaatagaccttaagtgatttgat 81  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  40053565 tcaacacattctatttgatagtagtgtgtgtgacctataaatagacctcaagtgatttgat 40053625  T

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Target: chr4; HSP #9
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 21 - 81
Target Start/End: Original strand, 39220184 - 39220244
Alignment:
Q  21 tcaacacattctatttgatagtagtgtgtgtgacctataaatagaccttaagtgatttgat 81  Q
    ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||    
T  39220184 tcaacacattctatttgatagtagtgtgtttgatctataaatagaccttaagtgatttgat 39220244  T

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Target: chr4; HSP #10
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 21 - 81
Target Start/End: Original strand, 39226709 - 39226769
Alignment:
Q  21 tcaacacattctatttgatagtagtgtgtgtgacctataaatagaccttaagtgatttgat 81  Q
    ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||    
T  39226709 tcaacacattctatttgatagtagtgtgtttgatctataaatagaccttaagtgatttgat 39226769  T

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Target: chr4; HSP #11
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 29 - 81
Target Start/End: Original strand, 236135 - 236187
Alignment:
Q  29 ttctatttgatagtagtgtgtgtgacctataaatagaccttaagtgatttgat 81  Q
    |||||||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  236135 ttctatttgatagtagtgtgtgtgacttataaatagactttaagtgatttgat 236187  T

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Target: chr4; HSP #12
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 106 - 193
Target Start/End: Original strand, 34859419 - 34859506
Alignment:
Q  106 aatacaaaatagaaatatgctctagttttctagttccactactcaaaggttgagggtaagaattggtctcggtgtggatacacgtaga 193  Q
    ||||||||| | |||||||||||||||||||  ||| |||||||| | |||||| |||| ||||| | ||||||||||||||||||||    
T  34859419 aatacaaaacacaaatatgctctagttttcttcttctactactcagaagttgagagtaataattgttatcggtgtggatacacgtaga 34859506  T

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Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 21 - 66
Target Start/End: Complemental strand, 47113405 - 47113360
Alignment:
Q  21 tcaacacattctatttgatagtagtgtgtgtgacctataaatagac 66  Q
    ||||||| ||| |||| ||||||||||||||||| |||||||||||    
T  47113405 tcaacactttcaatttaatagtagtgtgtgtgacttataaatagac 47113360  T

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Target: chr1 (Bit Score: 74; Significance: 4e-34; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 116 - 193
Target Start/End: Complemental strand, 16860402 - 16860325
Alignment:
Q  116 agaaatatgctctagttttctagttccactactcaaaggttgagggtaagaattggtctcggtgtggatacacgtaga 193  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  16860402 agaaatatgctctagttttctagttccactactcaaaggttgagcgtaagaattggtctcggtgtggatacacgtaga 16860325  T

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Target: chr1; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 23 - 81
Target Start/End: Complemental strand, 16860479 - 16860421
Alignment:
Q  23 aacacattctatttgatagtagtgtgtgtgacctataaatagaccttaagtgatttgat 81  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  16860479 aacacattctatttgatagtagtgtgtgtgacctataaatagaccttaaatgatttgat 16860421  T

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Target: chr1; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 106 - 186
Target Start/End: Complemental strand, 26337829 - 26337749
Alignment:
Q  106 aatacaaaatagaaatatgctctagttttctagttccactactcaaaggttgagggtaagaattggtctcggtgtggatac 186  Q
    ||||||||| | ||||||| ||| ||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  26337829 aatacaaaacacaaatatgttcttgttttcttgttccactacttaaaggttgaggttaagaattggtctcggtgtggatac 26337749  T

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Target: chr1; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 106 - 193
Target Start/End: Original strand, 40772345 - 40772430
Alignment:
Q  106 aatacaaaatagaaatatgctctagttttctagttccactactcaaaggttgagggtaagaattggtctcggtgtggatacacgtaga 193  Q
    ||||||||| | ||| ||||||||||||| | ||||||||||||||||||||||||||||||||||  || |||||||||||||||||    
T  40772345 aatacaaaacataaacatgctctagttttattgttccactactcaaaggttgagggtaagaattgg--tcagtgtggatacacgtaga 40772430  T

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Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 156 - 193
Target Start/End: Original strand, 19406099 - 19406136
Alignment:
Q  156 tgagggtaagaattggtctcggtgtggatacacgtaga 193  Q
    ||||||||||||||||||||||||||||||||||||||    
T  19406099 tgagggtaagaattggtctcggtgtggatacacgtaga 19406136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 21 - 81
Target Start/End: Complemental strand, 26337904 - 26337846
Alignment:
Q  21 tcaacacattctatttgatagtagtgtgtgtgacctataaatagaccttaagtgatttgat 81  Q
    ||||||| | ||||||||| ||||||||||  || ||||||||||| ||||||||||||||    
T  26337904 tcaacacctcctatttgattgtagtgtgtg--acttataaatagactttaagtgatttgat 26337846  T

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Target: chr2 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 118 - 193
Target Start/End: Original strand, 20471530 - 20471608
Alignment:
Q  118 aaatatgctctagttttctagttccactactcaaaggttgaggg---taagaattggtctcggtgtggatacacgtaga 193  Q
    ||||||||||||||||||| |||||||| ||||||||||||| |   |||||||||||| |||||||||||||||||||    
T  20471530 aaatatgctctagttttcttgttccactgctcaaaggttgagagtaataagaattggtcacggtgtggatacacgtaga 20471608  T

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Target: chr8 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 122 - 181
Target Start/End: Original strand, 21593425 - 21593484
Alignment:
Q  122 atgctctagttttctagttccactactcaaaggttgagggtaagaattggtctcggtgtg 181  Q
    ||||||||||||||| |||||| ||||||||||||||| |||||||||||||||||||||    
T  21593425 atgctctagttttcttgttccaatactcaaaggttgagagtaagaattggtctcggtgtg 21593484  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 21 - 81
Target Start/End: Original strand, 21593345 - 21593405
Alignment:
Q  21 tcaacacattctatttgatagtagtgtgtgtgacctataaatagaccttaagtgatttgat 81  Q
    ||||||| ||||||||||||||||||||| |||| |||||||||||||||||| |||||||    
T  21593345 tcaacactttctatttgatagtagtgtgtatgacttataaatagaccttaagtaatttgat 21593405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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