View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10468_low_8 (Length: 447)
Name: NF10468_low_8
Description: NF10468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10468_low_8 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 417; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 16 - 436
Target Start/End: Original strand, 6900365 - 6900785
Alignment:
| Q |
16 |
catggttcacgttgccttttaccgaaactatggcaaaactttcaagaagcctcgtcgtccttatgagaaggagcgtttagatgctgagttgaagctcgtc |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6900365 |
catggttcacgttgccttttaccgaaactatggcaaaactttcaagaagcctcgtcgtccttatgagaaggagcgtttagatgctgagttgaagctcgtc |
6900464 |
T |
|
| Q |
116 |
ggagagtacggtcttcgctgcaagcgcgagctttggagggttcaatatgctcttagccgtatccgtaacaacgctaggacacttttgacactggatgaga |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
6900465 |
ggagagtacggtcttcgctgcaagcgcgagctttggagggttcaatatgctcttagccgtatccgtaacaacgctaggacgcttttgacactggatgaga |
6900564 |
T |
|
| Q |
216 |
agaatcctcgtcggatctttgagggtgaagcacttttgaggagaatgttcaaacatggtcttcttgatgaaacacagaacaagctcgattatgtgttggc |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6900565 |
agaatcctcgtcggatctttgagggtgaagcacttttgaggagaatgttcaaacatggtcttcttgatgaaacacagaacaagctcgattatgtgttggc |
6900664 |
T |
|
| Q |
316 |
tctcactgttgagaattttcttgaacgtcgtcttcagactctcgtgttcaaatctggaatggccaagtccattcatcacgctagggttcttatcagacag |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6900665 |
tctcactgttgagaattttcttgaacgtcgtcttcagactctcgtgttcaaatctggaatggccaagtccattcatcacgctagggttcttatcagacag |
6900764 |
T |
|
| Q |
416 |
aggcacatcaggtatattcat |
436 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
6900765 |
aggcacatcaggtatattcat |
6900785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 16 - 378
Target Start/End: Complemental strand, 44931062 - 44930699
Alignment:
| Q |
16 |
catggttcacgttgccttttaccgaaactatggcaaaactttcaagaagcctcgtcgtccttatgagaaggagcgtttagatgctgagttgaagctcgtc |
115 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| || |||||||||||||| ||||||||||||||||||||| |
|
|
| T |
44931062 |
catggttcacgttgcgttttaccgaaactatggcaaaactttcaagaagccccgtcgtccatacgagaaggagcgtttggatgctgagttgaagctcgtc |
44930963 |
T |
|
| Q |
116 |
ggagagtacggtcttcgctgcaagcgcgagctttggagggttcaatatgctcttagccgtatccgtaacaacgctaggacacttttgacactggatgaga |
215 |
Q |
| |
|
|||||||| ||||||||||| ||| | ||||| |||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||| | |
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|
| T |
44930962 |
ggagagtatggtcttcgctgtaagagagagctgtggagggttcaatacgctcttagccgtatccgtaacaatgctagaacacttttgacactggatgaaa |
44930863 |
T |
|
| Q |
216 |
agaatcctcgtcggatctttgagggtgaagcacttttgaggagaatgttcaaacatggtcttcttgatgaaacacagaacaagctcgattatgtgttggc |
315 |
Q |
| |
|
|||| |||||||||||||| ||||||||||| ||||||||||| ||||| || ||||| | ||||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
44930862 |
agaaccctcgtcggatcttcgagggtgaagctcttttgaggaggatgtttaagcatggcttgcttgatgaaactcagaacaagctcgattatgtcttggc |
44930763 |
T |
|
| Q |
316 |
tctcactgttgagaattttcttgaacgtcgtcttcagactc-tcgtgttcaaatctggaatggc |
378 |
Q |
| |
|
||||||||||||||||||||| || ||||||||||||||| | ||||| |||||||| ||||| |
|
|
| T |
44930762 |
tctcactgttgagaattttctcgagtgtcgtcttcagactctttgtgtttaaatctggcatggc |
44930699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 380 - 423
Target Start/End: Complemental strand, 44929873 - 44929830
Alignment:
| Q |
380 |
aagtccattcatcacgctagggttcttatcagacagaggcacat |
423 |
Q |
| |
|
||||||||||| || ||||||||||||||| ||||||||||||| |
|
|
| T |
44929873 |
aagtccattcaccatgctagggttcttatctgacagaggcacat |
44929830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 373; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 17 - 433
Target Start/End: Original strand, 200967 - 201383
Alignment:
| Q |
17 |
atggttcacgttgccttttaccgaaactatggcaaaactttcaagaagcctcgtcgtccttatgagaaggagcgtttagatgctgagttgaagctcgtcg |
116 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
200967 |
atggttcacgttgcgttttaccgaaactatggcaaaactttcaagaagccacgtcgtccttatgagaaggagcgtttagatgctgagttgaagctcgtcg |
201066 |
T |
|
| Q |
117 |
gagagtacggtcttcgctgcaagcgcgagctttggagggttcaatatgctcttagccgtatccgtaacaacgctaggacacttttgacactggatgagaa |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
201067 |
gagagtacggtcttcgctgcaagcgcgagctttggagggttcaatatgctcttagccgtatccgtaacaatgctaggacacttttgacactggatgagaa |
201166 |
T |
|
| Q |
217 |
gaatcctcgtcggatctttgagggtgaagcacttttgaggagaatgttcaaacatggtcttcttgatgaaacacagaacaagctcgattatgtgttggct |
316 |
Q |
| |
|
||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
201167 |
gaaccctcgtcggatctttgaaggtgaagcacttttgaggagaatgttcaaacatggtcttcttgatgaaacacagaacaagctcgattatgtgttggct |
201266 |
T |
|
| Q |
317 |
ctcactgttgagaattttcttgaacgtcgtcttcagactctcgtgttcaaatctggaatggccaagtccattcatcacgctagggttcttatcagacaga |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||| |||||||| ||||||||||||||||| |||| |
|
|
| T |
201267 |
ctcactgttgagaattttcttgaacgtcgtcttcagactcttgtgttcaaatctggcatggctaagtctattcatcatgctagggttcttatcaggcaga |
201366 |
T |
|
| Q |
417 |
ggcacatcaggtatatt |
433 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
201367 |
ggcacatcaggtatatt |
201383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 16 - 436
Target Start/End: Complemental strand, 208278 - 207858
Alignment:
| Q |
16 |
catggttcacgttgccttttaccgaaactatggcaaaactttcaagaagcctcgtcgtccttatgagaaggagcgtttagatgctgagttgaagctcgtc |
115 |
Q |
| |
|
||||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||| ||||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
208278 |
catggttcacgttgcgttttaccgtaactatggcaaaactttcaagaagccacgtcgtccatatgagaaggaacgtttggatgctgagttgaagctcgtc |
208179 |
T |
|
| Q |
116 |
ggagagtacggtcttcgctgcaagcgcgagctttggagggttcaatatgctcttagccgtatccgtaacaacgctaggacacttttgacactggatgaga |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
208178 |
ggagagtacggtcttcgctgcaagcgcgagctttggagggttcaatatgctcttagccgtatccgtaacaatgctaggacacttttgacactggatgaga |
208079 |
T |
|
| Q |
216 |
agaatcctcgtcggatctttgagggtgaagcacttttgaggagaatgttcaaacatggtcttcttgatgaaacacagaacaagctcgattatgtgttggc |
315 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
208078 |
agaaccctcgtcggatctttgaaggtgaagcacttttgaggagaatgttcaaacatggtcttcttgatgaaacacagaacaagctcgattatgtgttggc |
207979 |
T |
|
| Q |
316 |
tctcactgttgagaattttcttgaacgtcgtcttcagactctcgtgttcaaatctggaatggccaagtccattcatcacgctagggttcttatcagacag |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||| ||||| || ||||||||||| ||||| ||| |
|
|
| T |
207978 |
tctcactgttgagaattttcttgaacgtcgtcttcagactcttgtgttcaaatctggcatggctaagtctattcaccatgctagggttctaatcaggcag |
207879 |
T |
|
| Q |
416 |
aggcacatcaggtatattcat |
436 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
207878 |
aggcacatcaggtatattcat |
207858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 16 - 427
Target Start/End: Original strand, 24652249 - 24652660
Alignment:
| Q |
16 |
catggttcacgttgccttttaccgaaactatggcaaaactttcaagaagcctcgtcgtccttatgagaaggagcgtttagatgctgagttgaagctcgtc |
115 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24652249 |
catggttcacgttgccttttaccgtaactatggcaaaactttcaagaagccacgtcgtccatatgagaaggagcgtttagatgctgagttgaagctcgtc |
24652348 |
T |
|
| Q |
116 |
ggagagtacggtcttcgctgcaagcgcgagctttggagggttcaatatgctcttagccgtatccgtaacaacgctaggacacttttgacactggatgaga |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
24652349 |
cgagagtacggtcttcgctgcaagcgcgagctttggagggttcaatatgctcttagccgtatccgtaacaattctaggacacttttgacactggatgaga |
24652448 |
T |
|
| Q |
216 |
agaatcctcgtcggatctttgagggtgaagcacttttgaggagaatgttcaaacatggtcttcttgatgaaacacagaacaagctcgattatgtgttggc |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
24652449 |
agaatcctcgtcggatctttgagggtgaagcacttttgaggagaatgttcaaacatggtcttcttgatgaaacacaaaacaagcttgattatgtgttggc |
24652548 |
T |
|
| Q |
316 |
tctcactgttgagaattttcttgaacgtcgtcttcagactctcgtgttcaaatctggaatggccaagtccattcatcacgctagggttcttatcagacag |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||| |||||||| ||||||||||| ||||| ||| |
|
|
| T |
24652549 |
tctcactgttgagaattttcttgaacgtcgtcttcagactcttgtgttcaaatctggcatggctaagtctattcatcatgctagggttctaatcaggcag |
24652648 |
T |
|
| Q |
416 |
aggcacatcagg |
427 |
Q |
| |
|
|||||||||||| |
|
|
| T |
24652649 |
aggcacatcagg |
24652660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 45 - 430
Target Start/End: Original strand, 29513579 - 29513964
Alignment:
| Q |
45 |
atggcaaaactttcaagaagcctcgtcgtccttatgagaaggagcgtttagatgctgagttgaagctcgtcggagagtacggtcttcgctgcaagcgcga |
144 |
Q |
| |
|
|||| ||||| ||||||||||| |||||||| || ||||||||||| || |||||||||||||| || |||||||||||||||||| | |||||| | || |
|
|
| T |
29513579 |
atgggaaaacattcaagaagccgcgtcgtccatacgagaaggagcgattggatgctgagttgaaactggtcggagagtacggtcttaggtgcaagaggga |
29513678 |
T |
|
| Q |
145 |
gctttggagggttcaatatgctcttagccgtatccgtaacaacgctaggacacttttgacactggatgagaagaatcctcgtcggatctttgagggtgaa |
244 |
Q |
| |
|
||||||||||||||| || ||| | ||||||||||||||||| || |||| || ||||| |||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
29513679 |
gctttggagggttcagtacgctttgagccgtatccgtaacaatgcaaggaatctgttgaccttggatgagaagaatcctcgtcgtatctttgagggtgaa |
29513778 |
T |
|
| Q |
245 |
gcacttttgaggagaatgttcaaacatggtcttcttgatgaaacacagaacaagctcgattatgtgttggctctcactgttgagaattttcttgaacgtc |
344 |
Q |
| |
|
|| || ||||| || ||||| || |||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||| | |
|
|
| T |
29513779 |
gcgctgttgagaaggatgtttaagcatggtcttcttgatgaaactcagaacaaactcgattatgtcttggctctcactgttgagaattttcttgaacgcc |
29513878 |
T |
|
| Q |
345 |
gtcttcagactctcgtgttcaaatctggaatggccaagtccattcatcacgctagggttcttatcagacagaggcacatcaggtat |
430 |
Q |
| |
|
|||||||||| || | ||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
29513879 |
gtcttcagacacttgcattcaaatctggtatggccaagtccattcatcatgctagggttcttatcaggcagagacacatcaggtat |
29513964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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