View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10468_low_9 (Length: 434)

Name: NF10468_low_9
Description: NF10468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10468_low_9
NF10468_low_9
[»] chr4 (2 HSPs)
chr4 (1-419)||(52491975-52492390)
chr4 (202-419)||(52748792-52749003)
[»] chr3 (1 HSPs)
chr3 (202-419)||(51377378-51377597)
[»] chr1 (5 HSPs)
chr1 (250-406)||(41134476-41134632)
chr1 (28-191)||(18132338-18132503)
chr1 (28-167)||(18116297-18116438)
chr1 (245-289)||(49961442-49961486)
chr1 (250-289)||(4124748-4124787)
[»] chr7 (3 HSPs)
chr7 (28-93)||(36224563-36224628)
chr7 (28-94)||(36219376-36219442)
chr7 (262-299)||(23632982-23633019)
[»] chr5 (2 HSPs)
chr5 (250-289)||(1282928-1282967)
chr5 (262-299)||(6903219-6903256)


Alignment Details
Target: chr4 (Bit Score: 347; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 1 - 419
Target Start/End: Original strand, 52491975 - 52492390
Alignment:
Q  1 caaaagttgtgagatttcttgcgagttcaatgaaaacatgtttgatgtgggaaatcatgggccagtagtcaccaaattgtggcctatattttcgatacag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  52491975 caaaagttgtgagatttcttgcgagttcaatgaaaacatgtttgatgtgggaaatcatgggccagtagtcaccaaattgtggccgatattttcgatacag 52492074  T
Q  101 ttcaggataactatatgcgcgagtcattgagggaaaggagaaaatgcatatcacttggaagactcaaaattggaagacaatcaataatataaaacgtatt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  52492075 ttcaggataactatatgcgcgagtcattgagggaaaggagaaaatgcatatcacttggaagactcaaaattggaagacaatcaataatatagaacgtatt 52492174  T
Q  201 aagggagaggtttagcatgggaaaggc-agattttccaccatggaaaaacttttttctgactattagattaaagaggagtattgattttacgatggtctg 299  Q
    ||||| ||||||| ||||||||||||| || ||||||||||||| ||| |||||||||||||||||||||| | ||||||||||||||||| |||         
T  52492175 aagggtgaggtttcgcatgggaaaggctagtttttccaccatgggaaagcttttttctgactattagattataaaggagtattgattttaccatg----t 52492270  T
Q  300 tctgcataatattattttctctttcatatcatcttcaacccatgaatcccaattttctcactcgtcttgaattcccatttctttaccaaagccattccag 399  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  52492271 tctgcataatattattttctctttcatatcatcttcaacccatgaatcccaattttctcactcatcttgaattcccatttctttaccaaagccattccag 52492370  T
Q  400 ctatattgatttttggcctt 419  Q
    ||||||||||||||||||||    
T  52492371 ctatattgatttttggcctt 52492390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 202 - 419
Target Start/End: Original strand, 52748792 - 52749003
Alignment:
Q  202 agggagaggtttagcatgggaaaggcagatttt--ccaccatggaaaaacttttttctgactattagattaaagaggagtattgattttacgatggtctg 299  Q
    |||| ||| |||||||||||||||||  |||||  ||| |||| |||| ||||||| | || |||| |||||||||||||||||||||||  ||| ||||    
T  52748792 agggtgagctttagcatgggaaaggctaattttttccatcatgaaaaagctttttttt-accattatattaaagaggagtattgattttatcatgatctg 52748890  T
Q  300 tctgcataatattattttctctttcatatcatcttcaacccatgaatcccaattttctcactcgtcttgaattcccatttctttaccaaagccattccag 399  Q
    | ||||| |||||||||||||||||||||||||||        |||||| |||||||||| || ||||||||||||||||||||||||| ||||||| ||    
T  52748891 tttgcattatattattttctctttcatatcatcttg-------gaatcctaattttctcagtcatcttgaattcccatttctttaccaatgccattctag 52748983  T
Q  400 ctatattgatttttggcctt 419  Q
    ||||||||||||||||||||    
T  52748984 ctatattgatttttggcctt 52749003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 164; Significance: 2e-87; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 202 - 419
Target Start/End: Original strand, 51377378 - 51377597
Alignment:
Q  202 agggagaggtttagcatgggaaaggc-ag-attttccaccatggaaaaacttttttctgactattagattaaagaggagtattgattttacgatggtctg 299  Q
    |||| |||||||||||||||||| || ||  ||||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  51377378 agggtgaggtttagcatgggaaatgctagttttttctaccatggaaaagcttttttctgaccattagattaaagaggagtattgattttaccatggtctg 51377477  T
Q  300 tctgcataatattattttctctttcatatcatcttcaacccatgaatcccaattttctcactcgtcttgaattcccatttctttaccaaagccattccag 399  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||    
T  51377478 tctgcattatattattttctctttcatatcatcttcaacccatgaatcccaattttctcattcatcttgaattcccatttctttaccaaagccattccag 51377577  T
Q  400 ctatattgatttttggcctt 419  Q
    ||||||||||||||||||||    
T  51377578 ctatattgatttttggcctt 51377597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 133; Significance: 5e-69; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 250 - 406
Target Start/End: Complemental strand, 41134632 - 41134476
Alignment:
Q  250 ttttttctgactattagattaaagaggagtattgattttacgatggtctgtctgcataatattattttctctttcatatcatcttcaacccatgaatccc 349  Q
    ||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  41134632 ttttttctgaccattagattaaagaggagtattaattttaccatggtctgtctgcattatattattttctctttcatatcatcttcaacccatgaatccc 41134533  T
Q  350 aattttctcactcgtcttgaattcccatttctttaccaaagccattccagctatatt 406  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||    
T  41134532 aattttctcactcatcttgaattcccatttctttaccaaagccattcgagctatatt 41134476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 28 - 191
Target Start/End: Original strand, 18132338 - 18132503
Alignment:
Q  28 caatgaaaacatgtttgatgtgggaaatcatgggccagtagtcaccaaattgtggcctatattttcgatacagttcaggataac--tatatgcgcgagtc 125  Q
    |||||||||||||||| ||||||||||||||||||||  | |||||||||||||||| |||||||||||| ||||||||| |||  ||||||||| | ||    
T  18132338 caatgaaaacatgtttaatgtgggaaatcatgggccaagactcaccaaattgtggccgatattttcgatatagttcaggacaaccatatatgcgcaaatc 18132437  T
Q  126 attgagggaaaggagaaaatgcatatcacttggaagactcaaaattggaagacaatcaataatata 191  Q
    |||||||| |  ||||  ||||||  |||||||||||||||| | | || | || |||||||||||    
T  18132438 attgagggtagtgagacgatgcatgccacttggaagactcaacacttgagggcagtcaataatata 18132503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 28 - 167
Target Start/End: Original strand, 18116297 - 18116438
Alignment:
Q  28 caatgaaaacatgtttgatgtgggaaatcatgggccagtagtcaccaaattgtggcctatattttcgatacagttcaggataac--tatatgcgcgagtc 125  Q
    |||||||||||||||||||||| ||||||||||||||||| ||||||||  || ||| |||||||||||| ||||||||| |||  ||||||||| | ||    
T  18116297 caatgaaaacatgtttgatgtgagaaatcatgggccagtactcaccaaaccgtcgccgatattttcgatagagttcaggacaaccatatatgcgcaaatc 18116396  T
Q  126 attgagggaaaggagaaaatgcatatcacttggaagactcaa 167  Q
    || ||||| |  ||||  ||||||  ||| ||||||||||||    
T  18116397 atcgagggtagtgagacgatgcatgccacatggaagactcaa 18116438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 289
Target Start/End: Complemental strand, 49961486 - 49961442
Alignment:
Q  245 aaaacttttttctgactattagattaaagaggagtattgatttta 289  Q
    |||| ||||||||||| |||||||||| |||||||||||||||||    
T  49961486 aaaagttttttctgacaattagattaacgaggagtattgatttta 49961442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 250 - 289
Target Start/End: Original strand, 4124748 - 4124787
Alignment:
Q  250 ttttttctgactattagattaaagaggagtattgatttta 289  Q
    ||||||||||| |||||||||| |||||||||||||||||    
T  4124748 ttttttctgaccattagattaatgaggagtattgatttta 4124787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 28 - 93
Target Start/End: Complemental strand, 36224628 - 36224563
Alignment:
Q  28 caatgaaaacatgtttgatgtgggaaatcatgggccagtagtcaccaaattgtggcctatattttc 93  Q
    |||||||||||  ||||||||||| ||||||||||||||| |||||| |||| ||| || ||||||    
T  36224628 caatgaaaacacttttgatgtgggcaatcatgggccagtactcaccagattgcggcttacattttc 36224563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 28 - 94
Target Start/End: Complemental strand, 36219442 - 36219376
Alignment:
Q  28 caatgaaaacatgtttgatgtgggaaatcatgggccagtagtcaccaaattgtggcctatattttcg 94  Q
    |||| ||||||  ||||||||| ||||||||||||||||| |||||  |||||||| || |||||||    
T  36219442 caataaaaacacttttgatgtgagaaatcatgggccagtactcacctgattgtggcttaaattttcg 36219376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 299
Target Start/End: Original strand, 23632982 - 23633019
Alignment:
Q  262 attagattaaagaggagtattgattttacgatggtctg 299  Q
    |||||||||||||||||||| ||||||| |||||||||    
T  23632982 attagattaaagaggagtatagattttatgatggtctg 23633019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 250 - 289
Target Start/End: Complemental strand, 1282967 - 1282928
Alignment:
Q  250 ttttttctgactattagattaaagaggagtattgatttta 289  Q
    ||||||||||| |||||||||| |||||||||||||||||    
T  1282967 ttttttctgaccattagattaatgaggagtattgatttta 1282928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 299
Target Start/End: Complemental strand, 6903256 - 6903219
Alignment:
Q  262 attagattaaagaggagtattgattttacgatggtctg 299  Q
    |||||||||||||||||||| ||||||| |||||||||    
T  6903256 attagattaaagaggagtatagattttatgatggtctg 6903219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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