View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10469_high_1 (Length: 443)
Name: NF10469_high_1
Description: NF10469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10469_high_1 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 375; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 1 - 427
Target Start/End: Complemental strand, 10721881 - 10721455
Alignment:
| Q |
1 |
aaaagatacaaagtcatccaacaaagttagaatagaaaaaataacagaaatcagtcaatgtccatacagtgtagagggctaagccaccacctatgatagt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10721881 |
aaaagatacaaagtcatccaacaaagttagaatagaaaaaataacagaaatcagtcaatgtccatacagtgtagagggctaagccaccacctatgatagt |
10721782 |
T |
|
| Q |
101 |
cagaagcaaggtttgtgaattttgtctttaaccaccagaaagaaaggaacttaacattatctaaaagcttaatagtcaagcattctttgttattgaaaat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
10721781 |
cagaagcaaggtttgtgaattttgtctttaaccaccagaaagaaaggaacttaacattatctaaaagcttaatagtcaagcattatttgttattgaaaat |
10721682 |
T |
|
| Q |
201 |
tttactattcatttccttccaaatgatccaagtgcaagcacaccaaataagaaatataattgaagtttttgcttttgatgtatcatatgaattgccaaaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
10721681 |
tttactattcatttccttccaaatgatccaagtgcaagcacatcaaataagaaatataattgaagtttttgcttttgatgtaccatatgaattgccaaaa |
10721582 |
T |
|
| Q |
301 |
cacggtcattgacgaacttgatgccctaatgaaccaaacaacatacaatccnnnnnnnngacaagtcacatagtatctttgaccgtacccaccaaagttg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
10721581 |
cacggtcattgacgaacttgatgccctaatgaactaaacaacatacaatccaaaaaaaagacaagtcacatagtatctttgaccgcacccaccaaagttg |
10721482 |
T |
|
| Q |
401 |
agcatcttaggaaactatacctccttt |
427 |
Q |
| |
|
|||||||| | |||||||||||||||| |
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|
| T |
10721481 |
agcatcttggaaaactatacctccttt |
10721455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 73 - 278
Target Start/End: Original strand, 12524546 - 12524751
Alignment:
| Q |
73 |
agagggctaagccaccacctatgatagtcagaagcaaggtttgtgaattttgtctttaaccaccagaaagaaaggaacttaacattatctaaaagcttaa |
172 |
Q |
| |
|
|||||||||||||||||||||||||| ||| ||||||| ||| |||||||||||||| |||||| | |||| | |||||||||||||||||||||| |
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|
| T |
12524546 |
agagggctaagccaccacctatgataatcaaaagcaagttttaagaattttgtctttagccaccaaatagaagtcagtttaacattatctaaaagcttaa |
12524645 |
T |
|
| Q |
173 |
tagtcaagcattctttgttattgaaaattttactattcatttccttccaaatgatccaagtgcaagcacaccaaataagaaatataattgaagtttttgc |
272 |
Q |
| |
|
|| ||||| ||||| ||||||||||| | |||||||||||||| |||| ||||||| ||||||||||||||| | ||| |||||||| ||||||| |
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|
| T |
12524646 |
gtgttgagcatgctttgatattgaaaattatgttattcatttccttcaaaataatccaagagcaagcacaccaaatcaaaaacataattgaggtttttga |
12524745 |
T |
|
| Q |
273 |
ttttga |
278 |
Q |
| |
|
|||||| |
|
|
| T |
12524746 |
ttttga |
12524751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 204 - 247
Target Start/End: Original strand, 24033535 - 24033578
Alignment:
| Q |
204 |
actattcatttccttccaaatgatccaagtgcaagcacaccaaa |
247 |
Q |
| |
|
||||||||||| ||||||||| ||||||||||||||| |||||| |
|
|
| T |
24033535 |
actattcatttacttccaaataatccaagtgcaagcaaaccaaa |
24033578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 248
Target Start/End: Original strand, 2281584 - 2281617
Alignment:
| Q |
215 |
ccttccaaatgatccaagtgcaagcacaccaaat |
248 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |
|
|
| T |
2281584 |
ccttccaaatgatccaaatgcaagcacaccaaat |
2281617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 167; Significance: 3e-89; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 1 - 299
Target Start/End: Complemental strand, 18418048 - 18417750
Alignment:
| Q |
1 |
aaaagatacaaagtcatccaacaaagttagaatagaaaaaataacagaaatcagtcaatgtccatacagtgtagagggctaagccaccacctatgatagt |
100 |
Q |
| |
|
|||||||| | ||||||||||||||| ||||| ||||||||||||||||||||| ||||| ||||||| || |||||||||||||||||||||||||||| |
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|
| T |
18418048 |
aaaagatatagagtcatccaacaaagctagaagagaaaaaataacagaaatcagccaatgcccatacattgcagagggctaagccaccacctatgatagt |
18417949 |
T |
|
| Q |
101 |
cagaagcaaggtttgtgaattttgtctttaaccaccagaaagaaaggaacttaacattatctaaaagcttaatagtcaagcattctttgttattgaaaat |
200 |
Q |
| |
|
|| || |||||||||||||| |||| ||||||||||||||||||| || || |||||||||||||| |||||||||| | |||| |||||| |||||||| |
|
|
| T |
18417948 |
caaaaacaaggtttgtgaatattgtgtttaaccaccagaaagaaatgagctgaacattatctaaaaacttaatagtctaacattatttgttgttgaaaat |
18417849 |
T |
|
| Q |
201 |
tttactattcatttccttccaaatgatccaagtgcaagcacaccaaataagaaatataattgaagtttttgcttttgatgtatcatatgaattgccaaa |
299 |
Q |
| |
|
| |||||| ||||||||||||||||||||||||| |||| |||||||||||| ||||||||||| || |||||||||||| || | |||||||||| |
|
|
| T |
18417848 |
taagctattcctttccttccaaatgatccaagtgcaggcacgccaaataagaaacataattgaagtcttcgcttttgatgtaccaactaaattgccaaa |
18417750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 81 - 248
Target Start/End: Complemental strand, 30798171 - 30798004
Alignment:
| Q |
81 |
aagccaccacctatgatagtcagaagcaaggtttgtgaattttgtctttaaccaccagaaagaaaggaacttaacattatctaaaagcttaatagtcaag |
180 |
Q |
| |
|
||||||||| ||||||||||| |||||| ||| | || ||| |||||||||||| ||||||| | ||| ||||| |||||||||||| | | | |
|
|
| T |
30798171 |
aagccaccaattatgatagtcaaaagcaatgttagaaaaagttgcctttaaccaccaaaaagaaatgtgcttgacattgtctaaaagcttagaaaccggg |
30798072 |
T |
|
| Q |
181 |
cattctttgttattgaaaattttactattcatttccttccaaatgatccaagtgcaagcacaccaaat |
248 |
Q |
| |
|
|| | ||||| ||||| || | |||||||||||||||||||||| || || |||||||||||||| |
|
|
| T |
30798071 |
caaacattgttgttgaagatcctgttattcatttccttccaaatgattcaggtacaagcacaccaaat |
30798004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 111 - 172
Target Start/End: Original strand, 48742166 - 48742227
Alignment:
| Q |
111 |
gtttgtgaattttgtctttaaccaccagaaagaaaggaacttaacattatctaaaagcttaa |
172 |
Q |
| |
|
||||| |||||||| ||| | |||| | |||||||| | ||||||||||||||||||||||| |
|
|
| T |
48742166 |
gtttgcgaattttgccttcagccacaaaaaagaaagcagcttaacattatctaaaagcttaa |
48742227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 103; Significance: 4e-51; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 23805768 - 23805523
Alignment:
| Q |
1 |
aaaagatacaaagtcatccaacaaagttagaatagaaaaaataacagaaatcagtcaatgtccatacagtgta-----gagggctaagccaccacctatg |
95 |
Q |
| |
|
||||||||||||| |||||||||||||||||| |||||||||| ||||| ||| | ||| |||||| | ||||||||| |||||||||||| |
|
|
| T |
23805768 |
aaaagatacaaagccatccaacaaagttagaaaagaaaaaatatcagaacccagcctatgctcatacacaacacaagagagggctaatccaccacctatg |
23805669 |
T |
|
| Q |
96 |
atagtcagaagcaaggtttgtgaattttgtctttaaccaccagaaagaaaggaacttaacattatctaaaagcttaatagtcaagcattctttgttattg |
195 |
Q |
| |
|
||||||| ||||||||||| ||||||||| ||||||| || | ||||||| || |||| |||||||||||||||| |||| ||||||||||||||||| |
|
|
| T |
23805668 |
atagtcaaaagcaaggtttatgaattttgcctttaacgactaaaaagaaatgagcttagcattatctaaaagcttgatagatgagcattctttgttattg |
23805569 |
T |
|
| Q |
196 |
aaaattttactattcatttccttccaaatgatccaagtgcaagcaca |
242 |
Q |
| |
|
|||||||| |||||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
23805568 |
aaaattttgctattccttt-cttccaaatgatccaagtgcaagcaca |
23805523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 28838892 - 28839016
Alignment:
| Q |
1 |
aaaagatacaaagtcatccaacaaagttagaatagaaaaaa-taacagaaatcagtcaatgtccatacagtgtagagggctaagccaccacctatgatag |
99 |
Q |
| |
|
|||| ||||| ||||||||||||||| ||||| | |||||| ||||| ||| |||||||| || ||| | ||||| ||||||||||||||||||||| |
|
|
| T |
28838892 |
aaaatatacagagtcatccaacaaagctagaaaataaaaaaataacaaaaactagtcaatgcacagacacggcagaggtctaagccaccacctatgatag |
28838991 |
T |
|
| Q |
100 |
tcagaagcaaggtttgtgaattttg |
124 |
Q |
| |
|
||| |||||| |||| ||||||||| |
|
|
| T |
28838992 |
tcaaaagcaaagtttatgaattttg |
28839016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 69; Significance: 8e-31; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 150 - 282
Target Start/End: Original strand, 43119213 - 43119344
Alignment:
| Q |
150 |
cttaacattatctaaaagcttaatagtcaagcattctttgttattgaaaattttactattcatttccttccaaatgatccaagtgcaagcacaccaaata |
249 |
Q |
| |
|
||||| |||||||||||||||||| ||| |||||||||| ||||| |||||| | ||||| |||| ||||||||||||||||||||||||||| ||||| |
|
|
| T |
43119213 |
cttaatattatctaaaagcttaattgtctagcattctttattattaaaaattc-attattcctttcattccaaatgatccaagtgcaagcacactaaata |
43119311 |
T |
|
| Q |
250 |
agaaatataattgaagtttttgcttttgatgta |
282 |
Q |
| |
|
||||| |||||||| || || |||||||||||| |
|
|
| T |
43119312 |
agaaacataattgatgtcttcgcttttgatgta |
43119344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 79 - 170
Target Start/End: Complemental strand, 12163181 - 12163090
Alignment:
| Q |
79 |
ctaagccaccacctatgatagtcagaagcaaggtttgtgaattttgtctttaaccaccagaaagaaaggaacttaacattatctaaaagctt |
170 |
Q |
| |
|
||||||||||||||| || ||| |||||| || |||| ||||||||||||||||| |||||||| | |||||||||||| | |||||| |
|
|
| T |
12163181 |
ctaagccaccacctacagtaatcaaaagcaataattttgaaatttgtctttaaccaccaaaaagaaagaagcttaacattatcaataagctt |
12163090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 78 - 146
Target Start/End: Original strand, 8243102 - 8243170
Alignment:
| Q |
78 |
gctaagccaccacctatgatagtcagaagcaaggtttgtgaattttgtctttaaccaccagaaagaaag |
146 |
Q |
| |
|
|||||||||||||||| ||| ||| ||| || |||||||| |||||||||||||||||| |||||||| |
|
|
| T |
8243102 |
gctaagccaccacctacaataatcaaaagtaatgtttgtgatttttgtctttaaccaccaaaaagaaag |
8243170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 83 - 171
Target Start/End: Original strand, 41238411 - 41238499
Alignment:
| Q |
83 |
gccaccacctatgatagtcagaagcaaggtttgtgaattttgtctttaaccaccagaaagaaaggaacttaacattatctaaaagctta |
171 |
Q |
| |
|
|||||||||||||||| ||| || ||| || || |||||| ||||||| |||| |||||||| | ||||||||||||| ||||||| |
|
|
| T |
41238411 |
gccaccacctatgataatcaaaaacaataattttgtattttgcctttaactaccaaaaagaaagaagtttaacattatctagaagctta |
41238499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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