View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10469_high_2 (Length: 430)
Name: NF10469_high_2
Description: NF10469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10469_high_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 279; Significance: 1e-156; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 9 - 408
Target Start/End: Complemental strand, 25339736 - 25339343
Alignment:
| Q |
9 |
agcagagacctcaaaccatctctttcttcactgtcatatagcatctcgagtttggggtaaatttttggactggataggaatctattttgctcctccttaa |
108 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||||||||| || || |
|
|
| T |
25339736 |
agcagagacctcgaaccatctctttcttcactgtcatatagcatctcgagtttcggataaatttttggactggataggaatctgttttgctccttctcaa |
25339637 |
T |
|
| Q |
109 |
aaaaccttttggatcattttcattgcttaagtggggaagcaagatatttgacattgagaaaggggttttggcttatttggaatgttacaatttgggtgat |
208 |
Q |
| |
|
|| ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25339636 |
aa--ccttttggatcattttcattgtttaagtggggaagcaagatatttgacgttgagaaaggggttttggcttatttggaatgttacaatttgggtgat |
25339539 |
T |
|
| Q |
209 |
ttggaagttccaaaattagagaattttcaaaaatttgattgtacaagtggaggaaatggtggaggaaattaaagttttatcttggtggtggagtttgagt |
308 |
Q |
| |
|
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| || ||| ||||||||||| ||||||||||||||| |
|
|
| T |
25339538 |
ttggaagttccaaaatgaaagaattttcaaaaatttgattgtacaagtggaggaaatggtggacgagatt-aagttttatct---tggtggagtttgagt |
25339443 |
T |
|
| Q |
309 |
gggtaaaaaagtacagctttcttgtattatgaatgatgttgggaccctggggattgtatctgtcgagagtagggagtggttggtggtgatctgtgctgct |
408 |
Q |
| |
|
|||||||| | |||||||||||||||||||||||| ||||||||||| || ||||||||| |||||||| ||||||| ||||| ||||||||||| |||| |
|
|
| T |
25339442 |
gggtaaaagaatacagctttcttgtattatgaatggtgttgggaccccggagattgtatccgtcgagagcagggagtcgttggaggtgatctgtgatgct |
25339343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 9 - 295
Target Start/End: Complemental strand, 25451844 - 25451560
Alignment:
| Q |
9 |
agcagagacctcaaaccatctctttcttcactgtcatatagcatctcgagtttggggtaaatttttggactggataggaatctattttgctcctccttaa |
108 |
Q |
| |
|
|||||||||||| ||| ||| |||||||||||||||||||||||||||||||||| | |||| ||||||||||||| |||||||||||||| |||| || |
|
|
| T |
25451844 |
agcagagacctcgaacaatcgctttcttcactgtcatatagcatctcgagtttggcgcaaatatttggactggatacaaatctattttgctcttcctcaa |
25451745 |
T |
|
| Q |
109 |
aaaaccttttggatcattttcattgcttaagtggggaagcaagatatttgacattgagaaaggggttttggcttatttggaatgttacaatttgggtgat |
208 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||| |||||| ||| |||||||||||||| |||||||||||| |||||||| |||||| |
|
|
| T |
25451744 |
aa--ccttttggatcattttcattgcttaagtggggaagcaagagatttgaagttgcgaaaggggttttggattatttggaatgctacaatttaggtgat |
25451647 |
T |
|
| Q |
209 |
ttggaagttccaaaattagagaattttcaaaaatttgattgtacaagtggaggaaatggtggaggaaattaaagttttatcttggtg |
295 |
Q |
| |
|
|||||||| |||| | |||||||||||||||||| || ||||||||||||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
25451646 |
ttggaagtcccaacacgagagaattttcaaaaattcgagtgtacaagtggaggaaatggtggaggagattaaggttttatcttggtg |
25451560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 214 - 408
Target Start/End: Complemental strand, 25474330 - 25474136
Alignment:
| Q |
214 |
agttccaaaattagagaattttcaaaaatttgattgtacaagtggaggaaatggtggaggaaattaaagttttatcttggtggtggagtttgagtgggta |
313 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25474330 |
agttccaaaatgagagaattttcaaaaatttgattgtaaaagtggaggaaatggtggaggagattaaagttttatcttggtggtggagtttgagtgggta |
25474231 |
T |
|
| Q |
314 |
aaaaagtacagctttcttgtattatgaatgatgttgggaccctggggattgtatctgtcgagagtagggagtggttggtggtgatctgtgctgct |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
25474230 |
aaaaagtacagctttcttgtattatgaatgatgttgggaccctgaggattgtatctgtcgagagtagggagtggttggtggtgatctgtgatgct |
25474136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 345 - 408
Target Start/End: Complemental strand, 25451561 - 25451498
Alignment:
| Q |
345 |
tgttgggaccctggggattgtatctgtcgagagtagggagtggttggtggtgatctgtgctgct |
408 |
Q |
| |
|
|||||||||| || ||||||||||||| | |||||||||||||||||||||||||||| |||| |
|
|
| T |
25451561 |
tgttgggaccacggtgattgtatctgtcaaaagtagggagtggttggtggtgatctgtgatgct |
25451498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University