View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10469_high_4 (Length: 317)
Name: NF10469_high_4
Description: NF10469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10469_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 295
Target Start/End: Complemental strand, 36551592 - 36551298
Alignment:
| Q |
1 |
aggcaagatttgcatgttgatagaaacaaagtaagtttggttagttaagaaaaacccatgtcgatgaatccaaagaaacagacctgaaagaaattaacga |
100 |
Q |
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| T |
36551592 |
aggcaagatttgcatgttgatagaaacaaagtatgtttggttagttaagaaaaacccatgtcgatgaatccaaagaaacagacctgaaagaaattaacga |
36551493 |
T |
|
| Q |
101 |
tgaggccggaagcgaagaagagcaggcctagtggaaccacgacagcagccgctgctatagccatggccgccctctctctgtctctgtcttactccgaaac |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |
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| T |
36551492 |
tgaggccggaagcgaagaagagcaggcctagtggaaccacgacagcagccgctgcaatagccatggccgccctctctctgtctctgtcttactccgacac |
36551393 |
T |
|
| Q |
201 |
aaacaacggaatttccgaaatggaaaatgagaaagagagagaaagtgggagggaaatgaatgaatcgataggattaagatgaaataaatgtgact |
295 |
Q |
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| T |
36551392 |
aaacaacgaaatttccgaaatggaaaatgagaaagagagagaaagtgggagggaaatgaacgaatcgataggattaagatgaaataaatgtgact |
36551298 |
T |
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Back To:
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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 230
Target Start/End: Original strand, 2584676 - 2584725
Alignment:
| Q |
181 |
tctctgtcttactccgaaacaaacaacggaatttccgaaatggaaaatga |
230 |
Q |
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||||| ||||||||||| |||||||||| |||||| |||||| ||||||| |
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| T |
2584676 |
tctctttcttactccgagacaaacaacgaaatttctgaaatgaaaaatga |
2584725 |
T |
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