View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10469_high_5 (Length: 254)

Name: NF10469_high_5
Description: NF10469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10469_high_5
NF10469_high_5
[»] chr7 (27 HSPs)
chr7 (1-141)||(48704272-48704412)
chr7 (188-237)||(48704459-48704508)
chr7 (66-134)||(1546444-1546512)
chr7 (66-132)||(6602492-6602558)
chr7 (66-132)||(13168280-13168346)
chr7 (66-132)||(24228310-24228376)
chr7 (66-132)||(39859130-39859196)
chr7 (66-132)||(45359493-45359559)
chr7 (81-134)||(6056938-6056991)
chr7 (66-131)||(27955527-27955592)
chr7 (73-134)||(31913633-31913694)
chr7 (73-134)||(46867834-46867895)
chr7 (63-132)||(48852248-48852317)
chr7 (73-133)||(17199080-17199140)
chr7 (66-132)||(30940326-30940392)
chr7 (66-128)||(35693275-35693337)
chr7 (66-132)||(46439431-46439497)
chr7 (66-132)||(47386110-47386176)
chr7 (73-134)||(23962468-23962529)
chr7 (63-132)||(29996415-29996484)
chr7 (66-134)||(13034830-13034898)
chr7 (66-130)||(23953962-23954026)
chr7 (76-131)||(2492493-2492548)
chr7 (66-132)||(23906162-23906228)
chr7 (66-132)||(34776816-34776882)
chr7 (68-113)||(34691133-34691178)
chr7 (66-134)||(7402050-7402118)
[»] chr2 (27 HSPs)
chr2 (31-140)||(11315250-11315359)
chr2 (50-141)||(10716795-10716886)
chr2 (67-134)||(17946252-17946319)
chr2 (66-132)||(42519126-42519192)
chr2 (71-132)||(39664669-39664730)
chr2 (81-134)||(62718-62772)
chr2 (66-132)||(14389005-14389071)
chr2 (66-132)||(17696363-17696429)
chr2 (66-132)||(19908167-19908233)
chr2 (73-134)||(862211-862272)
chr2 (200-236)||(10716683-10716719)
chr2 (67-134)||(7744201-7744268)
chr2 (67-113)||(2767092-2767138)
chr2 (66-128)||(6797664-6797726)
chr2 (66-128)||(16763232-16763294)
chr2 (66-132)||(40560380-40560446)
chr2 (66-132)||(44709666-44709732)
chr2 (66-127)||(15432485-15432546)
chr2 (71-132)||(37645649-37645710)
chr2 (188-236)||(11315136-11315184)
chr2 (66-134)||(40097705-40097773)
chr2 (73-134)||(4416864-4416926)
chr2 (66-132)||(39455326-39455392)
chr2 (81-134)||(13999970-14000023)
chr2 (66-127)||(42001766-42001827)
chr2 (81-133)||(20940897-20940949)
chr2 (66-110)||(42879512-42879556)
[»] chr6 (12 HSPs)
chr6 (63-141)||(24662612-24662690)
chr6 (61-132)||(14338376-14338447)
chr6 (66-132)||(11355379-11355445)
chr6 (73-134)||(25172008-25172069)
chr6 (66-132)||(7049914-7049980)
chr6 (66-132)||(10568556-10568622)
chr6 (188-232)||(24662750-24662794)
chr6 (66-132)||(6899642-6899708)
chr6 (66-132)||(9398817-9398883)
chr6 (66-132)||(30891281-30891347)
chr6 (72-128)||(20523529-20523585)
chr6 (66-113)||(32439012-32439059)
[»] chr4 (22 HSPs)
chr4 (32-141)||(25993619-25993728)
chr4 (66-132)||(42980792-42980858)
chr4 (64-134)||(50131317-50131387)
chr4 (63-132)||(11255841-11255910)
chr4 (66-132)||(2693154-2693220)
chr4 (76-134)||(27382284-27382342)
chr4 (66-132)||(48646648-48646714)
chr4 (66-132)||(51012082-51012148)
chr4 (73-134)||(26296793-26296854)
chr4 (68-132)||(11601829-11601893)
chr4 (31-90)||(13450945-13451004)
chr4 (62-141)||(41356086-41356164)
chr4 (66-132)||(35404346-35404412)
chr4 (66-132)||(41761647-41761713)
chr4 (66-132)||(48813944-48814010)
chr4 (66-132)||(49523281-49523347)
chr4 (66-127)||(35996220-35996281)
chr4 (66-130)||(4519533-4519597)
chr4 (107-141)||(13450909-13450943)
chr4 (198-236)||(25993800-25993838)
chr4 (188-236)||(13450800-13450847)
chr4 (188-224)||(41355990-41356026)
[»] chr1 (20 HSPs)
chr1 (73-134)||(43868778-43868839)
chr1 (66-132)||(4855868-4855934)
chr1 (66-132)||(50555998-50556064)
chr1 (66-132)||(6818579-6818645)
chr1 (66-132)||(31238396-31238462)
chr1 (66-114)||(51122062-51122110)
chr1 (66-132)||(15104598-15104664)
chr1 (70-132)||(34778040-34778102)
chr1 (70-131)||(52643522-52643583)
chr1 (72-132)||(3013371-3013431)
chr1 (66-132)||(2869736-2869802)
chr1 (66-132)||(27087439-27087505)
chr1 (66-132)||(37344499-37344565)
chr1 (66-131)||(18183846-18183911)
chr1 (66-132)||(25278269-25278335)
chr1 (66-132)||(26225455-26225521)
chr1 (66-132)||(33602545-33602611)
chr1 (68-133)||(18064759-18064824)
chr1 (66-127)||(31801790-31801851)
chr1 (66-127)||(44157590-44157650)
[»] chr3 (31 HSPs)
chr3 (61-141)||(26449183-26449263)
chr3 (66-132)||(41977906-41977972)
chr3 (66-132)||(46112644-46112710)
chr3 (63-132)||(43765291-43765360)
chr3 (68-132)||(51684769-51684833)
chr3 (66-132)||(23293091-23293157)
chr3 (66-132)||(27899002-27899068)
chr3 (66-132)||(42279664-42279730)
chr3 (66-132)||(48830727-48830793)
chr3 (66-132)||(53190681-53190747)
chr3 (73-134)||(5125965-5126026)
chr3 (73-133)||(41623816-41623876)
chr3 (66-132)||(2226074-2226140)
chr3 (81-127)||(17238254-17238300)
chr3 (66-132)||(54898593-54898659)
chr3 (63-132)||(44276117-44276186)
chr3 (73-141)||(5133160-5133228)
chr3 (66-132)||(600866-600932)
chr3 (66-132)||(2377186-2377252)
chr3 (66-132)||(7884795-7884861)
chr3 (66-132)||(17515467-17515533)
chr3 (66-128)||(21348880-21348942)
chr3 (74-132)||(35905634-35905692)
chr3 (73-127)||(54092850-54092905)
chr3 (66-132)||(30599839-30599905)
chr3 (66-132)||(46197877-46197943)
chr3 (63-132)||(3152139-3152208)
chr3 (66-131)||(33113083-33113148)
chr3 (66-127)||(33852576-33852637)
chr3 (66-127)||(45257126-45257187)
chr3 (76-132)||(19987518-19987574)
[»] chr8 (18 HSPs)
chr8 (66-132)||(9184540-9184606)
chr8 (66-132)||(9673086-9673152)
chr8 (66-132)||(5036606-5036672)
chr8 (66-132)||(13486020-13486086)
chr8 (66-141)||(38547384-38547459)
chr8 (66-132)||(7745033-7745099)
chr8 (66-132)||(13108258-13108324)
chr8 (66-132)||(41825565-41825631)
chr8 (73-134)||(15145661-15145722)
chr8 (66-131)||(38882699-38882764)
chr8 (66-134)||(6164660-6164728)
chr8 (66-132)||(8609709-8609775)
chr8 (66-112)||(11722730-11722776)
chr8 (66-132)||(26242235-26242301)
chr8 (66-132)||(40339601-40339667)
chr8 (66-132)||(42941931-42941997)
chr8 (66-114)||(22272493-22272541)
chr8 (67-127)||(37525929-37525989)
[»] chr5 (11 HSPs)
chr5 (66-132)||(30468181-30468247)
chr5 (66-128)||(2179944-2180006)
chr5 (66-132)||(7267999-7268065)
chr5 (66-132)||(8539832-8539898)
chr5 (66-132)||(17574474-17574540)
chr5 (66-132)||(18624909-18624975)
chr5 (66-132)||(34327792-34327858)
chr5 (73-124)||(24496907-24496958)
chr5 (76-132)||(12737305-12737361)
chr5 (66-114)||(36057532-36057580)
chr5 (76-129)||(12800128-12800181)
[»] scaffold0204 (1 HSPs)
scaffold0204 (73-134)||(30370-30431)
[»] scaffold0129 (1 HSPs)
scaffold0129 (73-134)||(4623-4684)
[»] scaffold0146 (1 HSPs)
scaffold0146 (81-127)||(15899-15945)
[»] scaffold0024 (1 HSPs)
scaffold0024 (67-132)||(37362-37427)
[»] scaffold1454 (1 HSPs)
scaffold1454 (66-132)||(1419-1485)
[»] scaffold0564 (1 HSPs)
scaffold0564 (71-132)||(8422-8483)
[»] scaffold0722 (1 HSPs)
scaffold0722 (66-134)||(4748-4816)


Alignment Details
Target: chr7 (Bit Score: 121; Significance: 4e-62; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 48704272 - 48704412
Alignment:
Q  1 acgaaatatcaaaatagtcaccaaatttgtcatcaaaatggctcctccgtccaaatgttatgttacatgttgtgttgtcgtgtacacgtgtcaacaagga 100  Q
    ||||||||||||||||||| || ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48704272 acgaaatatcaaaatagtccccgaatttgttatcaaaatggcccctccgtccaaatgttatgttacatgttgtgttgtcgtgtacacgtgtcaacaagga 48704371  T
Q  101 agtcacgtgtacaaagaccaatttgatggaaacgatgaaaa 141  Q
    |||||||||||||| ||||||||||||||||||||||||||    
T  48704372 agtcacgtgtacaaggaccaatttgatggaaacgatgaaaa 48704412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 188 - 237
Target Start/End: Original strand, 48704459 - 48704508
Alignment:
Q  188 acccttgccttccaccctcagatttcactcttttcacatcaaacacgtct 237  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||    
T  48704459 acccttgccttccaccctcatatttcactcttttcacatcaaacacgtct 48704508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 66 - 134
Target Start/End: Original strand, 1546444 - 1546512
Alignment:
Q  66 catgttgtgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatggaaacg 134  Q
    |||||||||||||| | || ||||||||| ||||||||||||||||||| ||| || ||||||||||||    
T  1546444 catgttgtgttgtcttatatacgtgtcaaaaaggaagtcacgtgtacaaggactaaattgatggaaacg 1546512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 66 - 132
Target Start/End: Original strand, 6602492 - 6602558
Alignment:
Q  66 catgttgtgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatggaaa 132  Q
    |||| ||||||||| ||||||||||||||| ||| || ||||||||||| ||| |||||||||||||    
T  6602492 catgctgtgttgtcatgtacacgtgtcaaccaggcagccacgtgtacaaggactaatttgatggaaa 6602558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 66 - 132
Target Start/End: Original strand, 13168280 - 13168346
Alignment:
Q  66 catgttgtgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatggaaa 132  Q
    |||| ||||||||| ||||||||||||||||||  || ||||||||||| ||| |||||||||||||    
T  13168280 catgctgtgttgtcatgtacacgtgtcaacaagacagacacgtgtacaaggactaatttgatggaaa 13168346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 66 - 132
Target Start/End: Complemental strand, 24228376 - 24228310
Alignment:
Q  66 catgttgtgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatggaaa 132  Q
    |||||||||||||| | ||||||||||||||||| || ||||||||| ||||| || ||||||||||    
T  24228376 catgttgtgttgtcatatacacgtgtcaacaaggcagccacgtgtacgaagactaaattgatggaaa 24228310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 66 - 132
Target Start/End: Complemental strand, 39859196 - 39859130
Alignment:
Q  66 catgttgtgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatggaaa 132  Q
    |||| ||||||||| ||||||||||||||||||  || ||||||||||| ||| |||||||||||||    
T  39859196 catgctgtgttgtcatgtacacgtgtcaacaagacagccacgtgtacaaggactaatttgatggaaa 39859130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 66 - 132
Target Start/End: Original strand, 45359493 - 45359559
Alignment:
Q  66 catgttgtgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatggaaa 132  Q
    |||| ||||||||| ||||||||| |||| |||| |||||||||||||| ||| |||||||||||||    
T  45359493 catgctgtgttgtcatgtacacgtttcaaaaaggcagtcacgtgtacaaggactaatttgatggaaa 45359559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 81 - 134
Target Start/End: Original strand, 6056938 - 6056991
Alignment:
Q  81 tgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatggaaacg 134  Q
    |||||||||||| ||||||||| ||||| ||||| |||||||||||||||||||    
T  6056938 tgtacacgtgtctacaaggaagccacgtctacaaggaccaatttgatggaaacg 6056991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 66 - 131
Target Start/End: Original strand, 27955527 - 27955592
Alignment:
Q  66 catgttgtgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatggaa 131  Q
    |||||||||||||| ||||||| || ||||||||||| || |||| ||| ||||||||||||||||    
T  27955527 catgttgtgttgtcttgtacacttggcaacaaggaagccatgtgttcaaggaccaatttgatggaa 27955592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 73 - 134
Target Start/End: Original strand, 31913633 - 31913694
Alignment:
Q  73 tgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatggaaacg 134  Q
    ||||||| || ||||||||| ||||||||| ||||||||||| |||||||||||| ||||||    
T  31913633 tgttgtcttgcacacgtgtctacaaggaagccacgtgtacaaggaccaatttgattgaaacg 31913694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 73 - 134
Target Start/End: Complemental strand, 46867895 - 46867834
Alignment:
Q  73 tgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatggaaacg 134  Q
    ||||||| ||||||||||||  |||||||| ||| ||||||| |||||||||||||||||||    
T  46867895 tgttgtcttgtacacgtgtcttcaaggaagccacatgtacaaggaccaatttgatggaaacg 46867834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 63 - 132
Target Start/End: Complemental strand, 48852317 - 48852248
Alignment:
Q  63 ttacatgttgtgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatggaaa 132  Q
    ||||||| ||||||||| |||||| |||||||||||  ||||||||||||||  || |||||||||||||    
T  48852317 ttacatgatgtgttgtcttgtacatgtgtcaacaagacagtcacgtgtacaagaactaatttgatggaaa 48852248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 73 - 133
Target Start/End: Original strand, 17199080 - 17199140
Alignment:
Q  73 tgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatggaaac 133  Q
    ||||||| |||||||||||| ||||| ||||||  ||||||| ||||||||||||||||||    
T  17199080 tgttgtcttgtacacgtgtctacaagaaagtcatatgtacaaggaccaatttgatggaaac 17199140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 66 - 132
Target Start/End: Complemental strand, 30940392 - 30940326
Alignment:
Q  66 catgttgtgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatggaaa 132  Q
    |||| ||||||||| ||||||| ||||||||||| || ||||||||||| ||| || ||||||||||    
T  30940392 catgctgtgttgtcctgtacacatgtcaacaaggcagccacgtgtacaaggactaaattgatggaaa 30940326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 66 - 128
Target Start/End: Complemental strand, 35693337 - 35693275
Alignment:
Q  66 catgttgtgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatg 128  Q
    ||||| |||||||| ||||||||||||||||||| || ||||||||||| ||| || ||||||    
T  35693337 catgtagtgttgtcttgtacacgtgtcaacaaggcagccacgtgtacaaggactaaattgatg 35693275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 66 - 132
Target Start/End: Complemental strand, 46439497 - 46439431
Alignment:
Q  66 catgttgtgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatggaaa 132  Q
    |||||||||||||| |||||||||||||||| || || ||||||||||  ||| || ||||||||||    
T  46439497 catgttgtgttgtcttgtacacgtgtcaacagggcagccacgtgtacatggactaaattgatggaaa 46439431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 66 - 132
Target Start/End: Complemental strand, 47386176 - 47386110
Alignment:
Q  66 catgttgtgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatggaaa 132  Q
    |||| ||||||||| |||||| |||||||||||| || ||||||||||| ||| || ||||||||||    
T  47386176 catgatgtgttgtcctgtacaagtgtcaacaaggcagccacgtgtacaaggactaaattgatggaaa 47386110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 73 - 134
Target Start/End: Original strand, 23962468 - 23962529
Alignment:
Q  73 tgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatggaaacg 134  Q
    ||||||| |||||||||| | ||||||||| ||| ||||||| |||||||||||| ||||||    
T  23962468 tgttgtcttgtacacgtgcctacaaggaagccacatgtacaaggaccaatttgattgaaacg 23962529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 63 - 132
Target Start/End: Complemental strand, 29996484 - 29996415
Alignment:
Q  63 ttacatgttgtgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatggaaa 132  Q
    ||||||||| ||||||| ||||||||||||| |||   |||||||||||||| ||| || ||||||||||    
T  29996484 ttacatgttttgttgtcatgtacacgtgtcagcaaatcagtcacgtgtacaaggactaaattgatggaaa 29996415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 134
Target Start/End: Original strand, 13034830 - 13034898
Alignment:
Q  66 catgttgtgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatggaaacg 134  Q
    |||| ||||||||| ||||||||||||| | ||  || ||||||||||| ||||||||| |||||||||    
T  13034830 catgctgtgttgtcctgtacacgtgtcatctagtcagccacgtgtacaaggaccaatttcatggaaacg 13034898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 130
Target Start/End: Original strand, 23953962 - 23954026
Alignment:
Q  66 catgttgtgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatgga 130  Q
    |||||||||||||| |||||||||| ||| ||||||| ||||||| | | ||| |||||||||||    
T  23953962 catgttgtgttgtcttgtacacgtggcaaaaaggaagccacgtgttccaggactaatttgatgga 23954026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 76 - 131
Target Start/End: Original strand, 2492493 - 2492548
Alignment:
Q  76 tgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatggaa 131  Q
    |||| |||||||||| ||| ||||||||||||||| ||| ||| ||||||||||||    
T  2492493 tgtcttgtacacgtggcaaaaaggaagtcacgtgttcaaggactaatttgatggaa 2492548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 132
Target Start/End: Complemental strand, 23906228 - 23906162
Alignment:
Q  66 catgttgtgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatggaaa 132  Q
    |||| ||||||||| ||||||||||||||||||| |  ||| ||||||| ||| || ||||||||||    
T  23906228 catgctgtgttgtcctgtacacgtgtcaacaaggcaaacacttgtacaaggactaaattgatggaaa 23906162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 132
Target Start/End: Complemental strand, 34776882 - 34776816
Alignment:
Q  66 catgttgtgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatggaaa 132  Q
    |||||||||||||| |||||||||| |||||||| |  ||| |||||||  || |||||||||||||    
T  34776882 catgttgtgttgtcatgtacacgtgccaacaaggcaaccacatgtacaagaactaatttgatggaaa 34776816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 68 - 113
Target Start/End: Original strand, 34691133 - 34691178
Alignment:
Q  68 tgttgtgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtaca 113  Q
    |||||||||| | |||||||||| ||||||||||| ||||||||||    
T  34691133 tgttgtgttggcttgtacacgtggcaacaaggaagccacgtgtaca 34691178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 134
Target Start/End: Original strand, 7402050 - 7402118
Alignment:
Q  66 catgttgtgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatggaaacg 134  Q
    ||||||||| |||  |||||||| |||| | ||  || ||||||||||||||||||||||| |||||||    
T  7402050 catgttgtgctgtgttgtacacgcgtcatccagtcagccacgtgtacaaagaccaatttgacggaaacg 7402118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 78; Significance: 2e-36; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 31 - 140
Target Start/End: Complemental strand, 11315359 - 11315250
Alignment:
Q  31 catcaaaatggctcctccgtccaaatgttatgttacatgttgtgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatgga 130  Q
    |||||||||||  |||||||||||||||| || |||||||||||||||| |||||||||||||||||||||| ||| ||||||| |||||||||||||||    
T  11315359 catcaaaatggtccctccgtccaaatgttctgctacatgttgtgttgtcttgtacacgtgtcaacaaggaagccacatgtacaaggaccaatttgatgga 11315260  T
Q  131 aacgatgaaa 140  Q
    ||||||||||    
T  11315259 aacgatgaaa 11315250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 50 - 141
Target Start/End: Complemental strand, 10716886 - 10716795
Alignment:
Q  50 tccaaatgttatgttacatgttgtgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatggaaacgatgaaaa 141  Q
    |||||||| | |||| |||||||||||||| |||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||    
T  10716886 tccaaatgctttgttgcatgttgtgttgtcttgtacacgtgtcaacaaggaagccacgtgtacaaggaccaatttgatggaaatgatgaaaa 10716795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 67 - 134
Target Start/End: Original strand, 17946252 - 17946319
Alignment:
Q  67 atgttgtgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatggaaacg 134  Q
    ||||||||||||| ||||||| |||||| ||||||||||||||||||| ||| || ||||||||||||    
T  17946252 atgttgtgttgtcatgtacacatgtcaaaaaggaagtcacgtgtacaaggactaaattgatggaaacg 17946319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 66 - 132
Target Start/End: Complemental strand, 42519192 - 42519126
Alignment:
Q  66 catgttgtgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatggaaa 132  Q
    |||| ||||||||| ||||||||||||||||||| |||||||||||||| ||| || ||||||||||    
T  42519192 catgctgtgttgtcctgtacacgtgtcaacaaggcagtcacgtgtacaaggactaaattgatggaaa 42519126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 71 - 132
Target Start/End: Complemental strand, 39664730 - 39664669
Alignment:
Q  71 tgtgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatggaaa 132  Q
    ||||||||| ||||||||||||||||||| || ||||||||||| ||| |||||||||||||    
T  39664730 tgtgttgtcatgtacacgtgtcaacaaggcagccacgtgtacaaggactaatttgatggaaa 39664669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 81 - 134
Target Start/End: Complemental strand, 62772 - 62718
Alignment:
Q  81 tgtacacgtgtcaacaaggaa-gtcacgtgtacaaagaccaatttgatggaaacg 134  Q
    ||||||||||||||||||||| | ||||||||||| |||||||||||||||||||    
T  62772 tgtacacgtgtcaacaaggaaagccacgtgtacaatgaccaatttgatggaaacg 62718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 66 - 132
Target Start/End: Complemental strand, 14389071 - 14389005
Alignment:
Q  66 catgttgtgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatggaaa 132  Q
    |||||||||||||| |||||||||||||| |||| || ||||||||||| ||| || ||||||||||    
T  14389071 catgttgtgttgtcttgtacacgtgtcaataaggcagccacgtgtacaaggactaacttgatggaaa 14389005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 66 - 132
Target Start/End: Original strand, 17696363 - 17696429
Alignment:
Q  66 catgttgtgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatggaaa 132  Q
    |||||||||||||| ||||||||||||||||||| || || |||||||| ||| || ||||||||||    
T  17696363 catgttgtgttgtcctgtacacgtgtcaacaaggcagccatgtgtacaaggactaaattgatggaaa 17696429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 66 - 132
Target Start/End: Complemental strand, 19908233 - 19908167
Alignment:
Q  66 catgttgtgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatggaaa 132  Q
    |||| ||||||||| ||||||||||||||||||  || ||||||||||| ||| |||||||||||||    
T  19908233 catgctgtgttgtcatgtacacgtgtcaacaagacagccacgtgtacaaggactaatttgatggaaa 19908167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 73 - 134
Target Start/End: Complemental strand, 862272 - 862211
Alignment:
Q  73 tgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatggaaacg 134  Q
    ||||||| |||||||||||| ||||||||| || |||||||| |||||||||||| ||||||    
T  862272 tgttgtcttgtacacgtgtctacaaggaagccatgtgtacaaggaccaatttgattgaaacg 862211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 200 - 236
Target Start/End: Complemental strand, 10716719 - 10716683
Alignment:
Q  200 caccctcagatttcactcttttcacatcaaacacgtc 236  Q
    |||||||||||||||||||||||||||||||||||||    
T  10716719 caccctcagatttcactcttttcacatcaaacacgtc 10716683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 67 - 134
Target Start/End: Original strand, 7744201 - 7744268
Alignment:
Q  67 atgttgtgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatggaaacg 134  Q
    ||||||||||||| ||||||| |||||| ||||||| ||||||||||| ||| || |||||| |||||    
T  7744201 atgttgtgttgtcatgtacacatgtcaaaaaggaagccacgtgtacaatgactaaattgatgaaaacg 7744268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 67 - 113
Target Start/End: Original strand, 2767092 - 2767138
Alignment:
Q  67 atgttgtgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtaca 113  Q
    ||||||||||||| ||||||||||| ||||||| |||||||||||||    
T  2767092 atgttgtgttgtcctgtacacgtgttaacaaggcagtcacgtgtaca 2767138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 66 - 128
Target Start/End: Original strand, 6797664 - 6797726
Alignment:
Q  66 catgttgtgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatg 128  Q
    |||| ||||||||| ||||||||||||||||||| || ||||||||||| ||| || ||||||    
T  6797664 catgatgtgttgtcttgtacacgtgtcaacaaggcagccacgtgtacaaggactaaattgatg 6797726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 66 - 128
Target Start/End: Original strand, 16763232 - 16763294
Alignment:
Q  66 catgttgtgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatg 128  Q
    |||||||| ||||| ||||||||||||||||||| || ||||||||||| ||| || ||||||    
T  16763232 catgttgttttgtcttgtacacgtgtcaacaaggcagccacgtgtacaaggactaaattgatg 16763294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 66 - 132
Target Start/End: Original strand, 40560380 - 40560446
Alignment:
Q  66 catgttgtgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatggaaa 132  Q
    |||| ||||||||| ||||| ||||||||||||| || ||||||||||| ||| || ||||||||||    
T  40560380 catgctgtgttgtcatgtacgcgtgtcaacaaggcagccacgtgtacaaggactaaattgatggaaa 40560446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 66 - 132
Target Start/End: Complemental strand, 44709732 - 44709666
Alignment:
Q  66 catgttgtgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatggaaa 132  Q
    |||||||||||||| ||||||||||||||||||  |  ||||||||||| ||| || ||||||||||    
T  44709732 catgttgtgttgtcttgtacacgtgtcaacaagacatccacgtgtacaaggactaaattgatggaaa 44709666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 66 - 127
Target Start/End: Original strand, 15432485 - 15432546
Alignment:
Q  66 catgttgtgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgat 127  Q
    |||||||||||||| |||||||||| ||| |||||||||| |||| ||| ||| ||||||||    
T  15432485 catgttgtgttgtcttgtacacgtggcaagaaggaagtcatgtgttcaaggactaatttgat 15432546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 71 - 132
Target Start/End: Original strand, 37645649 - 37645710
Alignment:
Q  71 tgtgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatggaaa 132  Q
    ||||||||| ||||||||||||||||||  |  ||||||||||| ||||||||| |||||||    
T  37645649 tgtgttgtcctgtacacgtgtcaacaagacaaccacgtgtacaaggaccaatttaatggaaa 37645710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 236
Target Start/End: Complemental strand, 11315184 - 11315136
Alignment:
Q  188 acccttgccttccaccctcagatttcactcttttcacatcaaacacgtc 236  Q
    |||||| | |||||||||||  |||||||||||||||||||||||||||    
T  11315184 acccttactttccaccctcaattttcactcttttcacatcaaacacgtc 11315136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 134
Target Start/End: Original strand, 40097705 - 40097773
Alignment:
Q  66 catgttgtgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatggaaacg 134  Q
    ||||| |||||||| | || ||||||||||||||||| |||||||||||  || ||||||||| |||||    
T  40097705 catgtcgtgttgtcttatatacgtgtcaacaaggaagccacgtgtacaagaactaatttgatgaaaacg 40097773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 134
Target Start/End: Complemental strand, 4416926 - 4416864
Alignment:
Q  73 tgttgtcgtgtacacgtgtcaacaaggaagtc-acgtgtacaaagaccaatttgatggaaacg 134  Q
    ||||||| ||||||| |||||||||| ||  | |||||||||| |||||||||||||||||||    
T  4416926 tgttgtcttgtacacatgtcaacaagaaaacccacgtgtacaaggaccaatttgatggaaacg 4416864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 132
Target Start/End: Original strand, 39455326 - 39455392
Alignment:
Q  66 catgttgtgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatggaaa 132  Q
    |||||||||||||| ||||||||||||||||||| |  | |||| |||| ||| || ||||||||||    
T  39455326 catgttgtgttgtcatgtacacgtgtcaacaaggcaccctcgtgcacaaggactaaattgatggaaa 39455392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 81 - 134
Target Start/End: Original strand, 13999970 - 14000023
Alignment:
Q  81 tgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatggaaacg 134  Q
    |||| ||||||  |||| |||| ||||||||||| |||||||||||||||||||    
T  13999970 tgtatacgtgtttacaaagaagccacgtgtacaaggaccaatttgatggaaacg 14000023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 66 - 127
Target Start/End: Original strand, 42001766 - 42001827
Alignment:
Q  66 catgttgtgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgat 127  Q
    ||||||| |||||| |||||||||| ||| ||||||||||||||| ||| |||  |||||||    
T  42001766 catgttgagttgtcttgtacacgtgacaagaaggaagtcacgtgttcaaggactgatttgat 42001827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 133
Target Start/End: Original strand, 20940897 - 20940949
Alignment:
Q  81 tgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatggaaac 133  Q
    ||||||||||||| | ||  || ||||||||||| ||||||||||||||||||    
T  20940897 tgtacacgtgtcatccagttagacacgtgtacaatgaccaatttgatggaaac 20940949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 110
Target Start/End: Original strand, 42879512 - 42879556
Alignment:
Q  66 catgttgtgttgtcgtgtacacgtgtcaacaaggaagtcacgtgt 110  Q
    |||| ||||||||| |||||||||| ||| |||||||||||||||    
T  42879512 catgctgtgttgtcttgtacacgtgacaagaaggaagtcacgtgt 42879556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 4e-25; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 63 - 141
Target Start/End: Original strand, 24662612 - 24662690
Alignment:
Q  63 ttacatgttgtgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatggaaacgatgaaaa 141  Q
    ||||||||||||||||| |||||||||||||||||||||| ||||||||||| | ||||||||||||||| ||||||||    
T  24662612 ttacatgttgtgttgtcttgtacacgtgtcaacaaggaagacacgtgtacaagggccaatttgatggaaatgatgaaaa 24662690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 61 - 132
Target Start/End: Complemental strand, 14338447 - 14338376
Alignment:
Q  61 tgttacatgttgtgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatggaaa 132  Q
    |||| |||| ||||||||| |||||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  14338447 tgttgcatgatgtgttgtcctgtacacgtgtcaacaaggaagccacgtgtacaaggaccaatttgatggaaa 14338376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 66 - 132
Target Start/End: Original strand, 11355379 - 11355445
Alignment:
Q  66 catgttgtgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatggaaa 132  Q
    |||||||||||||| ||||||||||||||||||| || ||||||||||| ||| |||||||||||||    
T  11355379 catgttgtgttgtcatgtacacgtgtcaacaaggcagccacgtgtacaaggactaatttgatggaaa 11355445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 73 - 134
Target Start/End: Complemental strand, 25172069 - 25172008
Alignment:
Q  73 tgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatggaaacg 134  Q
    ||||||| |||||||||||||||||||||||||| ||||||| ||||||||||||| |||||    
T  25172069 tgttgtcttgtacacgtgtcaacaaggaagtcacatgtacaaggaccaatttgatgaaaacg 25172008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 66 - 132
Target Start/End: Original strand, 7049914 - 7049980
Alignment:
Q  66 catgttgtgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatggaaa 132  Q
    |||||||||||||| ||||||||||||||||||| |  ||||||||||| ||| |||||||||||||    
T  7049914 catgttgtgttgtcatgtacacgtgtcaacaaggcatccacgtgtacaaggactaatttgatggaaa 7049980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 66 - 132
Target Start/End: Original strand, 10568556 - 10568622
Alignment:
Q  66 catgttgtgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatggaaa 132  Q
    |||||||||||||| ||||||||||||||||||| || ||| ||||||| ||| |||||||||||||    
T  10568556 catgttgtgttgtcatgtacacgtgtcaacaaggcagccacatgtacaaggactaatttgatggaaa 10568622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 188 - 232
Target Start/End: Original strand, 24662750 - 24662794
Alignment:
Q  188 acccttgccttccaccctcagatttcactcttttcacatcaaaca 232  Q
    |||||| ||||||||||||||||||||||||||||||||||||||    
T  24662750 acccttaccttccaccctcagatttcactcttttcacatcaaaca 24662794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 66 - 132
Target Start/End: Original strand, 6899642 - 6899708
Alignment:
Q  66 catgttgtgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatggaaa 132  Q
    ||||||||||| || ||||||||||||||||||| |  ||||||||||| ||| |||||||||||||    
T  6899642 catgttgtgttatcatgtacacgtgtcaacaaggcaaccacgtgtacaaggactaatttgatggaaa 6899708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 66 - 132
Target Start/End: Original strand, 9398817 - 9398883
Alignment:
Q  66 catgttgtgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatggaaa 132  Q
    |||||||||||||| ||||||||||||||||||  || ||||||||||| ||| || ||||||||||    
T  9398817 catgttgtgttgtcctgtacacgtgtcaacaagacagccacgtgtacaaggactaaattgatggaaa 9398883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 66 - 132
Target Start/End: Original strand, 30891281 - 30891347
Alignment:
Q  66 catgttgtgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatggaaa 132  Q
    ||||| || ||||| |||||||||||||||||  ||| ||||||||||| |||||||||||||||||    
T  30891281 catgtagtcttgtcttgtacacgtgtcaacaaacaagccacgtgtacaaggaccaatttgatggaaa 30891347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 128
Target Start/End: Original strand, 20523529 - 20523585
Alignment:
Q  72 gtgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatg 128  Q
    |||||||| ||||||||||||||||||| || ||||||||||| ||| || ||||||    
T  20523529 gtgttgtcctgtacacgtgtcaacaaggcagccacgtgtacaaggactaaattgatg 20523585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 66 - 113
Target Start/End: Complemental strand, 32439059 - 32439012
Alignment:
Q  66 catgttgtgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtaca 113  Q
    |||| ||||||||| ||||||||||||||||||| || ||||||||||    
T  32439059 catgatgtgttgtcttgtacacgtgtcaacaaggcagccacgtgtaca 32439012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 32 - 141
Target Start/End: Original strand, 25993619 - 25993728
Alignment:
Q  32 atcaaaatggctcctccgtccaaatgttatgttacatgttgtgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatggaa 131  Q
    ||||||||||  |||| ||||||||  |  |||||||| ||||||||| ||||||||||||||||| |||| ||||||||||  ||||||||||||||||    
T  25993619 atcaaaatggtccctcggtccaaatactccgttacatgatgtgttgtcttgtacacgtgtcaacaatgaagccacgtgtacatggaccaatttgatggaa 25993718  T
Q  132 acgatgaaaa 141  Q
    | ||||||||    
T  25993719 atgatgaaaa 25993728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 66 - 132
Target Start/End: Original strand, 42980792 - 42980858
Alignment:
Q  66 catgttgtgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatggaaa 132  Q
    |||||||||||||| ||||||||||||||||||  |||||||||||||||||| || ||||||||||    
T  42980792 catgttgtgttgtcctgtacacgtgtcaacaagacagtcacgtgtacaaagactaaattgatggaaa 42980858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 64 - 134
Target Start/End: Original strand, 50131317 - 50131387
Alignment:
Q  64 tacatgttgtgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatggaaacg 134  Q
    |||||||  ||||||| |||||||||||| ||||||||||||||||||||| ||| ||||||||| |||||    
T  50131317 tacatgtcatgttgtcttgtacacgtgtctacaaggaagtcacgtgtacaaggactaatttgatgaaaacg 50131387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 63 - 132
Target Start/End: Complemental strand, 11255910 - 11255841
Alignment:
Q  63 ttacatgttgtgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatggaaa 132  Q
    ||||||| ||||||||| ||||||||||||||||||| || ||||||||||| ||| || ||||||||||    
T  11255910 ttacatgctgtgttgtcttgtacacgtgtcaacaaggcagccacgtgtacaaggactaaattgatggaaa 11255841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 66 - 132
Target Start/End: Complemental strand, 2693220 - 2693154
Alignment:
Q  66 catgttgtgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatggaaa 132  Q
    |||| ||||||||| |||||||||||||| |||| || ||||||||||| ||| |||||||||||||    
T  2693220 catgctgtgttgtcctgtacacgtgtcaagaaggcagccacgtgtacaaggactaatttgatggaaa 2693154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 76 - 134
Target Start/End: Original strand, 27382284 - 27382342
Alignment:
Q  76 tgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatggaaacg 134  Q
    |||| |||||||||||||||||| ||| ||||||||||| ||| |||||||||||||||    
T  27382284 tgtcttgtacacgtgtcaacaagaaagccacgtgtacaaggactaatttgatggaaacg 27382342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 66 - 132
Target Start/End: Complemental strand, 48646714 - 48646648
Alignment:
Q  66 catgttgtgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatggaaa 132  Q
    |||||||||||||| | ||||||||||||||||| |  ||||||||||| ||| |||||||||||||    
T  48646714 catgttgtgttgtcatttacacgtgtcaacaaggcaaccacgtgtacaaggactaatttgatggaaa 48646648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 66 - 132
Target Start/End: Original strand, 51012082 - 51012148
Alignment:
Q  66 catgttgtgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatggaaa 132  Q
    |||| ||||||||| ||||||||||||||||||| || ||||||||||| ||| || ||||||||||    
T  51012082 catgatgtgttgtcttgtacacgtgtcaacaaggcagccacgtgtacaaggactaaattgatggaaa 51012148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 73 - 134
Target Start/End: Complemental strand, 26296854 - 26296793
Alignment:
Q  73 tgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatggaaacg 134  Q
    ||||||| |||||||||||| ||||||||| ||||| ||||| ||||||||||||| |||||    
T  26296854 tgttgtcttgtacacgtgtctacaaggaagccacgtatacaaggaccaatttgatgaaaacg 26296793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 68 - 132
Target Start/End: Original strand, 11601829 - 11601893
Alignment:
Q  68 tgttgtgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatggaaa 132  Q
    |||||||||||| |||||||||||||| |||| | ||||||||| || ||| |||||||||||||    
T  11601829 tgttgtgttgtcatgtacacgtgtcaagaaggcaatcacgtgtataaggactaatttgatggaaa 11601893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 90
Target Start/End: Complemental strand, 13451004 - 13450945
Alignment:
Q  31 catcaaaatggctcctccgtccaaatgttatgttacatgttgtgttgtcgtgtacacgtg 90  Q
    |||||||||||  ||||| |||||||| | ||||||||||||||||||| ||||||||||    
T  13451004 catcaaaatggtccctccatccaaatgctctgttacatgttgtgttgtcttgtacacgtg 13450945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 62 - 141
Target Start/End: Complemental strand, 41356164 - 41356086
Alignment:
Q  62 gttacatgttgtgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatggaaacgatgaaaa 141  Q
    |||| ||||||||||||  ||||   ||||||||||||||| |||||| |||| ||||||||||||||||| ||||||||    
T  41356164 gttatatgttgtgttgttttgtaattgtgtcaacaaggaagccacgtgaacaaggaccaatttgatggaaa-gatgaaaa 41356086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 66 - 132
Target Start/End: Complemental strand, 35404412 - 35404346
Alignment:
Q  66 catgttgtgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatggaaa 132  Q
    |||||||||||||| |||||| |||||||||||  || ||||||||||| ||| || ||||||||||    
T  35404412 catgttgtgttgtcatgtacatgtgtcaacaagacagccacgtgtacaatgactaaattgatggaaa 35404346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 66 - 132
Target Start/End: Complemental strand, 41761713 - 41761647
Alignment:
Q  66 catgttgtgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatggaaa 132  Q
    |||| |||||| || ||||||||||||||||||| |||||||||||||| ||| || | ||||||||    
T  41761713 catgctgtgttctcatgtacacgtgtcaacaaggcagtcacgtgtacaaggactaaatcgatggaaa 41761647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 66 - 132
Target Start/End: Original strand, 48813944 - 48814010
Alignment:
Q  66 catgttgtgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatggaaa 132  Q
    |||||||||||||| |||||| |||| ||||||| || ||||||||||| ||| || ||||||||||    
T  48813944 catgttgtgttgtcatgtacatgtgttaacaaggcagccacgtgtacaaggactaaattgatggaaa 48814010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 66 - 132
Target Start/End: Original strand, 49523281 - 49523347
Alignment:
Q  66 catgttgtgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatggaaa 132  Q
    |||||||||||||| ||||||||||||||||||  |  | ||||||||||||| || ||||||||||    
T  49523281 catgttgtgttgtcttgtacacgtgtcaacaagacaaccgcgtgtacaaagactaaattgatggaaa 49523347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 66 - 127
Target Start/End: Original strand, 35996220 - 35996281
Alignment:
Q  66 catgttgtgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgat 127  Q
    |||||||||||||| |||||||||| ||| ||||||| ||||||| ||| ||| ||||||||    
T  35996220 catgttgtgttgtcttgtacacgtggcaagaaggaagccacgtgttcaaggactaatttgat 35996281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 130
Target Start/End: Original strand, 4519533 - 4519597
Alignment:
Q  66 catgttgtgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatgga 130  Q
    |||| ||||||||| |||||||||| ||| ||| ||||||||||| ||| ||| |||||||||||    
T  4519533 catgctgtgttgtcttgtacacgtggcaaaaagaaagtcacgtgttcaaggactaatttgatgga 4519597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 141
Target Start/End: Complemental strand, 13450943 - 13450909
Alignment:
Q  107 gtgtacaaagaccaatttgatggaaacgatgaaaa 141  Q
    |||||||| ||||||||||||||||||||||||||    
T  13450943 gtgtacaaggaccaatttgatggaaacgatgaaaa 13450909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 236
Target Start/End: Original strand, 25993800 - 25993838
Alignment:
Q  198 tccaccctcagatttcactcttttcacatcaaacacgtc 236  Q
    |||||||| |||||||| |||||||||||||||||||||    
T  25993800 tccacccttagatttcaatcttttcacatcaaacacgtc 25993838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 236
Target Start/End: Complemental strand, 13450847 - 13450800
Alignment:
Q  188 acccttgccttccaccctcagatttcactcttttcacatcaaacacgtc 236  Q
    |||||| ||||| ||||||||||| |||||||||||||| |||||||||    
T  13450847 acccttaccttctaccctcagatt-cactcttttcacataaaacacgtc 13450800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 224
Target Start/End: Complemental strand, 41356026 - 41355990
Alignment:
Q  188 acccttgccttccaccctcagatttcactcttttcac 224  Q
    |||||| |||||||||||| |||||||||||||||||    
T  41356026 acccttaccttccaccctcggatttcactcttttcac 41355990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 73 - 134
Target Start/End: Original strand, 43868778 - 43868839
Alignment:
Q  73 tgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatggaaacg 134  Q
    ||||||| |||||||||||| ||||||||||||||||||||| |||||||||||||||||||    
T  43868778 tgttgtcttgtacacgtgtctacaaggaagtcacgtgtacaaggaccaatttgatggaaacg 43868839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 66 - 132
Target Start/End: Complemental strand, 4855934 - 4855868
Alignment:
Q  66 catgttgtgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatggaaa 132  Q
    |||||||||||||| ||||||||||||||||||| |||||||||||||| ||| || ||||||||||    
T  4855934 catgttgtgttgtcttgtacacgtgtcaacaaggcagtcacgtgtacaaggactaaattgatggaaa 4855868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 66 - 132
Target Start/End: Complemental strand, 50556064 - 50555998
Alignment:
Q  66 catgttgtgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatggaaa 132  Q
    |||| ||||||||| ||||||||||||||||||| |||||||||||||| ||| |||||||||||||    
T  50556064 catgctgtgttgtcatgtacacgtgtcaacaagggagtcacgtgtacaaggactaatttgatggaaa 50555998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 66 - 132
Target Start/End: Complemental strand, 6818645 - 6818579
Alignment:
Q  66 catgttgtgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatggaaa 132  Q
    |||||||||||||| ||||||||||||||||||| || ||||||||||| ||| |||||||| ||||    
T  6818645 catgttgtgttgtcatgtacacgtgtcaacaaggcagccacgtgtacaaggactaatttgatagaaa 6818579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 66 - 132
Target Start/End: Complemental strand, 31238462 - 31238396
Alignment:
Q  66 catgttgtgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatggaaa 132  Q
    |||| ||||||||| ||||||||||||||||||| || ||||||||||| ||| |||||||||||||    
T  31238462 catgctgtgttgtcatgtacacgtgtcaacaaggcagccacgtgtacaaggactaatttgatggaaa 31238396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 66 - 114
Target Start/End: Original strand, 51122062 - 51122110
Alignment:
Q  66 catgttgtgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaa 114  Q
    |||||||||||||| |||||||||||||| |||||||||||||||||||    
T  51122062 catgttgtgttgtcatgtacacgtgtcaaaaaggaagtcacgtgtacaa 51122110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 66 - 132
Target Start/End: Original strand, 15104598 - 15104664
Alignment:
Q  66 catgttgtgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatggaaa 132  Q
    |||| ||||||||| |||||||||||||| |||| || ||||||||||| ||| |||||||||||||    
T  15104598 catgctgtgttgtcttgtacacgtgtcaataaggcagccacgtgtacaaggactaatttgatggaaa 15104664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 70 - 132
Target Start/End: Complemental strand, 34778102 - 34778040
Alignment:
Q  70 ttgtgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatggaaa 132  Q
    |||||||||| ||||||||||||||||||| || ||||||||||| ||| || ||||||||||    
T  34778102 ttgtgttgtcttgtacacgtgtcaacaaggcagccacgtgtacaaggactaaattgatggaaa 34778040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 70 - 131
Target Start/End: Complemental strand, 52643583 - 52643522
Alignment:
Q  70 ttgtgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatggaa 131  Q
    |||||||||| ||||||| ||||||||| | |||||||||||||| ||| ||||||||||||    
T  52643583 ttgtgttgtcctgtacacatgtcaacaatgcagtcacgtgtacaatgactaatttgatggaa 52643522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 72 - 132
Target Start/End: Complemental strand, 3013431 - 3013371
Alignment:
Q  72 gtgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatggaaa 132  Q
    |||||||| ||||||||||||||||||| || ||||||||||| ||| || ||||||||||    
T  3013431 gtgttgtcatgtacacgtgtcaacaaggcagccacgtgtacaaggactaaattgatggaaa 3013371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 66 - 132
Target Start/End: Original strand, 2869736 - 2869802
Alignment:
Q  66 catgttgtgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatggaaa 132  Q
    |||| ||||||||| ||||||||||||||||||| || ||| ||||||| ||| || ||||||||||    
T  2869736 catgatgtgttgtcctgtacacgtgtcaacaaggcagccacatgtacaaggactaaattgatggaaa 2869802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 66 - 132
Target Start/End: Original strand, 27087439 - 27087505
Alignment:
Q  66 catgttgtgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatggaaa 132  Q
    |||| ||||||||| ||||||||||||||||||| || ||||||||||| |||  | ||||||||||    
T  27087439 catgctgtgttgtcttgtacacgtgtcaacaaggcagccacgtgtacaaggactgaattgatggaaa 27087505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 66 - 132
Target Start/End: Original strand, 37344499 - 37344565
Alignment:
Q  66 catgttgtgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatggaaa 132  Q
    |||| ||||||||| ||||||||||||||||||| || |||||||| || ||| || ||||||||||    
T  37344499 catgatgtgttgtcatgtacacgtgtcaacaaggcagccacgtgtataaggactaaattgatggaaa 37344565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 66 - 131
Target Start/End: Complemental strand, 18183911 - 18183846
Alignment:
Q  66 catgttgtgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatggaa 131  Q
    |||||||||||||| |||||||||| ||| || |||| ||||||| ||| ||| ||||||||||||    
T  18183911 catgttgtgttgtcttgtacacgtggcaaaaaagaagccacgtgttcaaggactaatttgatggaa 18183846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 132
Target Start/End: Complemental strand, 25278335 - 25278269
Alignment:
Q  66 catgttgtgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatggaaa 132  Q
    |||| |||| |||| ||||||||||||||||||| || |||||||| || ||| || ||||||||||    
T  25278335 catgatgtgctgtcatgtacacgtgtcaacaaggcagccacgtgtataaggactaaattgatggaaa 25278269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 132
Target Start/End: Complemental strand, 26225521 - 26225455
Alignment:
Q  66 catgttgtgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatggaaa 132  Q
    |||| ||||||||| ||||||||||||||||| | || ||| ||||||| ||| || ||||||||||    
T  26225521 catgatgtgttgtcttgtacacgtgtcaacaaagcagccacatgtacaaggactaaattgatggaaa 26225455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 132
Target Start/End: Complemental strand, 33602611 - 33602545
Alignment:
Q  66 catgttgtgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatggaaa 132  Q
    |||||||||||||| ||||||||||||| ||||  || || |||||||| ||| || ||||||||||    
T  33602611 catgttgtgttgtcttgtacacgtgtcagcaagtcagccatgtgtacaaggactaaattgatggaaa 33602545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 68 - 133
Target Start/End: Complemental strand, 18064824 - 18064759
Alignment:
Q  68 tgttgtgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatggaaac 133  Q
    |||||||||||  ||||||||||| | | | | || ||||||||||| ||||||||||||||||||    
T  18064824 tgttgtgttgtgttgtacacgtgttatctatggagccacgtgtacaatgaccaatttgatggaaac 18064759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 66 - 127
Target Start/End: Original strand, 31801790 - 31801851
Alignment:
Q  66 catgttgtgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgat 127  Q
    |||||||||||||| ||||| |||| ||| ||||||||||||||| ||  ||| ||||||||    
T  31801790 catgttgtgttgtcttgtacgcgtggcaagaaggaagtcacgtgttcagggacgaatttgat 31801851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 66 - 127
Target Start/End: Original strand, 44157590 - 44157650
Alignment:
Q  66 catgttgtgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgat 127  Q
    |||||||||||||| |||||||||| ||| ||||||| ||||||| | ||||| ||||||||    
T  44157590 catgttgtgttgtcttgtacacgtggcaagaaggaagccacgtgttc-aagactaatttgat 44157650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 61 - 141
Target Start/End: Complemental strand, 26449263 - 26449183
Alignment:
Q  61 tgttacatgttgtgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatggaaacgatgaaaa 141  Q
    ||||||||||||||||||| |||| |||||| |||||||||| ||| || |||| ||||||||||||||||| ||||||||    
T  26449263 tgttacatgttgtgttgtcttgtatacgtgttaacaaggaagccacatggacaaggaccaatttgatggaaatgatgaaaa 26449183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 66 - 132
Target Start/End: Original strand, 41977906 - 41977972
Alignment:
Q  66 catgttgtgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatggaaa 132  Q
    |||||||||||||| ||||||||||||||||||| |||||||||||||| ||| || ||||||||||    
T  41977906 catgttgtgttgtcttgtacacgtgtcaacaaggcagtcacgtgtacaaggactaaattgatggaaa 41977972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 66 - 132
Target Start/End: Original strand, 46112644 - 46112710
Alignment:
Q  66 catgttgtgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatggaaa 132  Q
    |||||||||||||| ||||||||||||||||||  |||||||||||||||||| || ||||||||||    
T  46112644 catgttgtgttgtcatgtacacgtgtcaacaagtcagtcacgtgtacaaagactaaattgatggaaa 46112710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 63 - 132
Target Start/End: Original strand, 43765291 - 43765360
Alignment:
Q  63 ttacatgttgtgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatggaaa 132  Q
    ||||||||||||||||| ||||||||||||||||||| || ||||||||||| ||| || ||||||||||    
T  43765291 ttacatgttgtgttgtcatgtacacgtgtcaacaaggcagccacgtgtacaatgactaaattgatggaaa 43765360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 68 - 132
Target Start/End: Original strand, 51684769 - 51684833
Alignment:
Q  68 tgttgtgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatggaaa 132  Q
    |||||||||||| ||||||||||||||||||| || ||||||||||| ||| |||||||||||||    
T  51684769 tgttgtgttgtcctgtacacgtgtcaacaaggcagacacgtgtacaaggactaatttgatggaaa 51684833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 66 - 132
Target Start/End: Complemental strand, 23293157 - 23293091
Alignment:
Q  66 catgttgtgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatggaaa 132  Q
    |||||||||||||| ||||||||||||||||||| || ||||||||||| ||| || ||||||||||    
T  23293157 catgttgtgttgtcatgtacacgtgtcaacaaggcagccacgtgtacaaggactaaattgatggaaa 23293091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 66 - 132
Target Start/End: Complemental strand, 27899068 - 27899002
Alignment:
Q  66 catgttgtgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatggaaa 132  Q
    |||||||||||||| ||||||||||||||||||| || || |||||||| ||| |||||||||||||    
T  27899068 catgttgtgttgtcatgtacacgtgtcaacaaggcagccatgtgtacaaggactaatttgatggaaa 27899002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 66 - 132
Target Start/End: Original strand, 42279664 - 42279730
Alignment:
Q  66 catgttgtgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatggaaa 132  Q
    |||||||||||||| | ||||||||||||||||| || ||||||||||| ||| |||||||||||||    
T  42279664 catgttgtgttgtcttatacacgtgtcaacaaggcagacacgtgtacaaggactaatttgatggaaa 42279730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 66 - 132
Target Start/End: Complemental strand, 48830793 - 48830727
Alignment:
Q  66 catgttgtgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatggaaa 132  Q
    |||||||||||||| ||||||||||||||||||| |  ||||||||||| ||| |||||||||||||    
T  48830793 catgttgtgttgtcatgtacacgtgtcaacaaggcaaccacgtgtacaaggactaatttgatggaaa 48830727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 66 - 132
Target Start/End: Complemental strand, 53190747 - 53190681
Alignment:
Q  66 catgttgtgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatggaaa 132  Q
    |||||||||||||| ||||||||||||||||||| || ||||||||||| ||| || ||||||||||    
T  53190747 catgttgtgttgtcttgtacacgtgtcaacaaggcagccacgtgtacaaggactaaattgatggaaa 53190681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 73 - 134
Target Start/End: Original strand, 5125965 - 5126026
Alignment:
Q  73 tgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatggaaacg 134  Q
    ||||||| |||||||||||| |||| |||| ||||||||||| |||||||||||||||||||    
T  5125965 tgttgtcttgtacacgtgtctacaaagaagccacgtgtacaaggaccaatttgatggaaacg 5126026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 73 - 133
Target Start/End: Original strand, 41623816 - 41623876
Alignment:
Q  73 tgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatggaaac 133  Q
    ||||||| |||| ||||||| ||||||||| ||||||||||| ||||||||||||||||||    
T  41623816 tgttgtcttgtatacgtgtctacaaggaagccacgtgtacaaggaccaatttgatggaaac 41623876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 66 - 132
Target Start/End: Complemental strand, 2226140 - 2226074
Alignment:
Q  66 catgttgtgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatggaaa 132  Q
    |||| ||||||||| ||||||||||||||||||| || ||||||||||| ||| || ||||||||||    
T  2226140 catgctgtgttgtcttgtacacgtgtcaacaaggtagccacgtgtacaaggactaaattgatggaaa 2226074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 81 - 127
Target Start/End: Original strand, 17238254 - 17238300
Alignment:
Q  81 tgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgat 127  Q
    |||||| ||||||||||||||||||||||||||| ||||||||||||    
T  17238254 tgtacaggtgtcaacaaggaagtcacgtgtacaaggaccaatttgat 17238300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 66 - 132
Target Start/End: Original strand, 54898593 - 54898659
Alignment:
Q  66 catgttgtgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatggaaa 132  Q
    ||||||| |||||| ||||||||||||||||||| || ||||||||||| ||| || ||||||||||    
T  54898593 catgttgcgttgtcttgtacacgtgtcaacaaggcagccacgtgtacaaggactaaattgatggaaa 54898659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 63 - 132
Target Start/End: Complemental strand, 44276186 - 44276117
Alignment:
Q  63 ttacatgttgtgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatggaaa 132  Q
    ||||||||||||| ||| ||||||||||||||||||  || ||||||||||| ||| || ||||||||||    
T  44276186 ttacatgttgtgtcgtcatgtacacgtgtcaacaagacagccacgtgtacaaggactaaattgatggaaa 44276117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 73 - 141
Target Start/End: Original strand, 5133160 - 5133228
Alignment:
Q  73 tgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatggaaacgatgaaaa 141  Q
    ||||||| |||||||||||| |||| |||| |||| |||| | ||||||||||||||||||||| ||||    
T  5133160 tgttgtcttgtacacgtgtctacaaagaagacacgcgtacgaggaccaatttgatggaaacgataaaaa 5133228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 66 - 132
Target Start/End: Original strand, 600866 - 600932
Alignment:
Q  66 catgttgtgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatggaaa 132  Q
    |||||||||||||| ||||||||||||||||| | || ||||||||||| ||| || || |||||||    
T  600866 catgttgtgttgtcatgtacacgtgtcaacaaagcagccacgtgtacaaggactaaattaatggaaa 600932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 66 - 132
Target Start/End: Original strand, 2377186 - 2377252
Alignment:
Q  66 catgttgtgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatggaaa 132  Q
    |||| ||||||||| ||||||||||||||||||| || ||||||||  | ||| |||||||||||||    
T  2377186 catgatgtgttgtcatgtacacgtgtcaacaaggcagccacgtgtaataggactaatttgatggaaa 2377252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 66 - 132
Target Start/End: Complemental strand, 7884861 - 7884795
Alignment:
Q  66 catgttgtgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatggaaa 132  Q
    |||||||||||||| ||||||||||||||||||| || ||| |||| || ||| || ||||||||||    
T  7884861 catgttgtgttgtcttgtacacgtgtcaacaaggcagccacatgtataaggactaaattgatggaaa 7884795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 66 - 132
Target Start/End: Original strand, 17515467 - 17515533
Alignment:
Q  66 catgttgtgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatggaaa 132  Q
    |||||||||||||| ||||||| |||||| |||| || ||||||||||| ||| || ||||||||||    
T  17515467 catgttgtgttgtcttgtacacttgtcaataaggcagccacgtgtacaaggactaaattgatggaaa 17515533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 66 - 128
Target Start/End: Original strand, 21348880 - 21348942
Alignment:
Q  66 catgttgtgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatg 128  Q
    |||||||||||||| |||||||||||||| ||||  | ||||||||||||||| || ||||||    
T  21348880 catgttgtgttgtcatgtacacgtgtcaataaggcggccacgtgtacaaagactaaattgatg 21348942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 74 - 132
Target Start/End: Complemental strand, 35905692 - 35905634
Alignment:
Q  74 gttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatggaaa 132  Q
    |||||| ||||||||||||||||||| || ||||||||||| ||| || ||||||||||    
T  35905692 gttgtcttgtacacgtgtcaacaaggcagccacgtgtacaaggactaaattgatggaaa 35905634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 73 - 127
Target Start/End: Original strand, 54092850 - 54092905
Alignment:
Q  73 tgttgtcgtgtacacgtgtcaacaagg-aagtcacgtgtacaaagaccaatttgat 127  Q
    ||||||| ||||||||||||||||||| ||| ||||||||||| || |||||||||    
T  54092850 tgttgtcttgtacacgtgtcaacaaggaaagccacgtgtacaatgatcaatttgat 54092905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 132
Target Start/End: Complemental strand, 30599905 - 30599839
Alignment:
Q  66 catgttgtgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatggaaa 132  Q
    |||| ||||||||| ||||||| |||||| |||| || ||||||||||| ||| || ||||||||||    
T  30599905 catgctgtgttgtcttgtacacatgtcaataaggcagccacgtgtacaaggactaaattgatggaaa 30599839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 132
Target Start/End: Original strand, 46197877 - 46197943
Alignment:
Q  66 catgttgtgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatggaaa 132  Q
    |||||||||||||  ||| ||||||||||||||| ||  |||||||||| ||| || ||||||||||    
T  46197877 catgttgtgttgttatgtgcacgtgtcaacaaggcagctacgtgtacaaggactaaattgatggaaa 46197943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 63 - 132
Target Start/End: Complemental strand, 3152208 - 3152139
Alignment:
Q  63 ttacatgttgtgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatggaaa 132  Q
    ||||||| | ||||||| ||||||||||||| ||||  || ||||||||||| ||| || ||||||||||    
T  3152208 ttacatgctttgttgtcatgtacacgtgtcagcaagtcagccacgtgtacaaggactaaattgatggaaa 3152139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 66 - 131
Target Start/End: Complemental strand, 33113148 - 33113083
Alignment:
Q  66 catgttgtgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatggaa 131  Q
    ||||||| | |||| |||||||||| ||| ||||||| ||||||| ||| ||| ||||||||||||    
T  33113148 catgttgcgctgtcttgtacacgtggcaaaaaggaagccacgtgttcaaggactaatttgatggaa 33113083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 66 - 127
Target Start/End: Complemental strand, 33852637 - 33852576
Alignment:
Q  66 catgttgtgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgat 127  Q
    |||||||||||||| |||| ||||| ||| ||||||| ||||||| ||| ||| ||||||||    
T  33852637 catgttgtgttgtcttgtagacgtggcaagaaggaagccacgtgttcaaggactaatttgat 33852576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 66 - 127
Target Start/End: Complemental strand, 45257187 - 45257126
Alignment:
Q  66 catgttgtgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgat 127  Q
    |||||||||||||| |||||||||| ||| || |||| ||||||| ||| ||| ||||||||    
T  45257187 catgttgtgttgtcttgtacacgtggcaagaatgaagccacgtgttcaaggactaatttgat 45257126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 132
Target Start/End: Complemental strand, 19987574 - 19987518
Alignment:
Q  76 tgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatggaaa 132  Q
    |||| ||||||| ||||||||||  |||||||||||||| ||| || ||||||||||    
T  19987574 tgtcctgtacacatgtcaacaagtcagtcacgtgtacaaggactaaattgatggaaa 19987518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 66 - 132
Target Start/End: Original strand, 9184540 - 9184606
Alignment:
Q  66 catgttgtgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatggaaa 132  Q
    |||| ||||||||| |||||| ||||||||||||||  |||||||||||||||||||||||||||||    
T  9184540 catgatgtgttgtcttgtacatgtgtcaacaaggaatccacgtgtacaaagaccaatttgatggaaa 9184606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 66 - 132
Target Start/End: Complemental strand, 9673152 - 9673086
Alignment:
Q  66 catgttgtgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatggaaa 132  Q
    |||||||||||||| ||||||||||||||||||| || ||||||||||| ||| |||||||||||||    
T  9673152 catgttgtgttgtcatgtacacgtgtcaacaaggcagccacgtgtacaaggactaatttgatggaaa 9673086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 66 - 132
Target Start/End: Original strand, 5036606 - 5036672
Alignment:
Q  66 catgttgtgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatggaaa 132  Q
    |||||||||||||| ||||||||||||||||||| || ||||||||||| ||| || ||||||||||    
T  5036606 catgttgtgttgtcttgtacacgtgtcaacaaggcagccacgtgtacaaggactaaattgatggaaa 5036672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 66 - 132
Target Start/End: Complemental strand, 13486086 - 13486020
Alignment:
Q  66 catgttgtgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatggaaa 132  Q
    |||||||||||| | ||||||||||||||||||| |||||||||||||| ||| || ||||||||||    
T  13486086 catgttgtgttgccctgtacacgtgtcaacaaggcagtcacgtgtacaaggactaaattgatggaaa 13486020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 66 - 141
Target Start/End: Original strand, 38547384 - 38547459
Alignment:
Q  66 catgttgtgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatggaaacgatgaaaa 141  Q
    |||| ||||||||| ||||||||||||||||||| || ||||||||||| ||| || |||||||||| ||| ||||    
T  38547384 catgctgtgttgtcttgtacacgtgtcaacaaggcagccacgtgtacaaggactaaattgatggaaatgataaaaa 38547459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 66 - 132
Target Start/End: Complemental strand, 7745099 - 7745033
Alignment:
Q  66 catgttgtgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatggaaa 132  Q
    |||| ||||||||| ||||||||||||||||||| |||||  ||||||| ||| |||||||||||||    
T  7745099 catgatgtgttgtcttgtacacgtgtcaacaaggcagtcatatgtacaaggactaatttgatggaaa 7745033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 66 - 132
Target Start/End: Complemental strand, 13108324 - 13108258
Alignment:
Q  66 catgttgtgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatggaaa 132  Q
    |||| ||||||||| ||||||||||||||||||| || ||||||||||| ||| || ||||||||||    
T  13108324 catgctgtgttgtcttgtacacgtgtcaacaaggcagccacgtgtacaaggactaaattgatggaaa 13108258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 66 - 132
Target Start/End: Complemental strand, 41825631 - 41825565
Alignment:
Q  66 catgttgtgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatggaaa 132  Q
    |||| ||||||||| ||||||| ||||||||||| |||||||||||||| ||| |||||||| ||||    
T  41825631 catgctgtgttgtcctgtacacatgtcaacaaggcagtcacgtgtacaaggactaatttgatagaaa 41825565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 73 - 134
Target Start/End: Complemental strand, 15145722 - 15145661
Alignment:
Q  73 tgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatggaaacg 134  Q
    ||||||| |||||||||||| ||||||||| ||| ||||||| |||||||||||| ||||||    
T  15145722 tgttgtcttgtacacgtgtcgacaaggaagccacatgtacaaggaccaatttgattgaaacg 15145661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 66 - 131
Target Start/End: Complemental strand, 38882764 - 38882699
Alignment:
Q  66 catgttgtgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatggaa 131  Q
    |||| ||||||||| ||||| |||| ||||||||||||||||||| ||| ||||||||| ||||||    
T  38882764 catgctgtgttgtcttgtactcgtggcaacaaggaagtcacgtgttcaaggaccaatttaatggaa 38882699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 66 - 134
Target Start/End: Original strand, 6164660 - 6164728
Alignment:
Q  66 catgttgtgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatggaaacg 134  Q
    ||||| ||||| || |||||||||||||| ||| ||  ||||||||||| |||||||||||||||||||    
T  6164660 catgtcgtgttatcttgtacacgtgtcaataagaaaaccacgtgtacaaggaccaatttgatggaaacg 6164728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 66 - 132
Target Start/End: Complemental strand, 8609775 - 8609709
Alignment:
Q  66 catgttgtgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatggaaa 132  Q
    |||| ||||||||| |||||||||||| |||||| || ||||||||||| ||| || ||||||||||    
T  8609775 catgctgtgttgtcttgtacacgtgtcgacaaggcagccacgtgtacaaggactaaattgatggaaa 8609709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 66 - 112
Target Start/End: Complemental strand, 11722776 - 11722730
Alignment:
Q  66 catgttgtgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtac 112  Q
    |||||||||||||  |||||||||||||||||||||| |||||||||    
T  11722776 catgttgtgttgtgttgtacacgtgtcaacaaggaagccacgtgtac 11722730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 66 - 132
Target Start/End: Complemental strand, 26242301 - 26242235
Alignment:
Q  66 catgttgtgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatggaaa 132  Q
    |||||||||||||| ||||||||||||||||||| |  || ||||||||  || |||||||||||||    
T  26242301 catgttgtgttgtcttgtacacgtgtcaacaaggcaaccatgtgtacaataactaatttgatggaaa 26242235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 66 - 132
Target Start/End: Complemental strand, 40339667 - 40339601
Alignment:
Q  66 catgttgtgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatggaaa 132  Q
    |||||||||||||| ||||||| ||||||||||| || ||||||||||| ||| || | ||||||||    
T  40339667 catgttgtgttgtcatgtacacctgtcaacaaggcagccacgtgtacaaggactaaatggatggaaa 40339601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 66 - 132
Target Start/End: Original strand, 42941931 - 42941997
Alignment:
Q  66 catgttgtgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatggaaa 132  Q
    ||||||||||||||  |||||||||||||||||| || ||| ||||||| ||| || ||||||||||    
T  42941931 catgttgtgttgtcaggtacacgtgtcaacaaggcagccacatgtacaaggactaaattgatggaaa 42941997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 114
Target Start/End: Original strand, 22272493 - 22272541
Alignment:
Q  66 catgttgtgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaa 114  Q
    |||||||||||||| |||||| |||||||||||| || |||||||||||    
T  22272493 catgttgtgttgtcatgtacatgtgtcaacaaggcagccacgtgtacaa 22272541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 127
Target Start/End: Complemental strand, 37525989 - 37525929
Alignment:
Q  67 atgttgtgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgat 127  Q
    ||||||||||||| | |||||||| ||| ||||||| ||||||| ||| ||| ||||||||    
T  37525989 atgttgtgttgtcttatacacgtggcaagaaggaagccacgtgttcaaggactaatttgat 37525929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 66 - 132
Target Start/End: Complemental strand, 30468247 - 30468181
Alignment:
Q  66 catgttgtgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatggaaa 132  Q
    |||||||||||||| ||||||||||||||||||| |  ||||||||||| ||| |||||||||||||    
T  30468247 catgttgtgttgtcatgtacacgtgtcaacaaggcaaccacgtgtacaaggactaatttgatggaaa 30468181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 66 - 128
Target Start/End: Original strand, 2179944 - 2180006
Alignment:
Q  66 catgttgtgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatg 128  Q
    |||||||||||||| ||||||||||||||||||| || ||| ||||||| ||| |||||||||    
T  2179944 catgttgtgttgtcatgtacacgtgtcaacaaggcagccacatgtacaaggactaatttgatg 2180006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 66 - 132
Target Start/End: Original strand, 7267999 - 7268065
Alignment:
Q  66 catgttgtgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatggaaa 132  Q
    |||| ||||||||| ||||||||||||||||||| || ||||||||||| ||| || ||||||||||    
T  7267999 catgatgtgttgtcttgtacacgtgtcaacaaggcagccacgtgtacaaggactaaattgatggaaa 7268065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 66 - 132
Target Start/End: Original strand, 8539832 - 8539898
Alignment:
Q  66 catgttgtgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatggaaa 132  Q
    |||||||||||||| ||||||||||||||||||| || ||||||| ||| ||| || ||||||||||    
T  8539832 catgttgtgttgtcatgtacacgtgtcaacaaggcagccacgtgtgcaaggactaaattgatggaaa 8539898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 66 - 132
Target Start/End: Original strand, 17574474 - 17574540
Alignment:
Q  66 catgttgtgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatggaaa 132  Q
    |||| ||||||||| ||||||||||||||||||| || ||||||||||| ||| || ||||||||||    
T  17574474 catgctgtgttgtcttgtacacgtgtcaacaaggcagccacgtgtacaaggactaaattgatggaaa 17574540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 66 - 132
Target Start/End: Complemental strand, 18624975 - 18624909
Alignment:
Q  66 catgttgtgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatggaaa 132  Q
    |||||||||||||| | ||||||||||||||||| |  ||||||||||| ||| |||||||||||||    
T  18624975 catgttgtgttgtcttatacacgtgtcaacaaggcaaccacgtgtacaaggactaatttgatggaaa 18624909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 66 - 132
Target Start/End: Original strand, 34327792 - 34327858
Alignment:
Q  66 catgttgtgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatggaaa 132  Q
    ||||||| |||||| ||||||||||||||||||| || ||||||||||| ||| || ||||||||||    
T  34327792 catgttgcgttgtcatgtacacgtgtcaacaaggcagccacgtgtacaaggactaaattgatggaaa 34327858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 124
Target Start/End: Original strand, 24496907 - 24496958
Alignment:
Q  73 tgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaattt 124  Q
    |||||||  |||||||||||||||||||||||| |||||||| |||||||||    
T  24496907 tgttgtctcgtacacgtgtcaacaaggaagtcatgtgtacaaggaccaattt 24496958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 132
Target Start/End: Original strand, 12737305 - 12737361
Alignment:
Q  76 tgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatggaaa 132  Q
    |||| ||||||||||||||||||  || ||||||||||| ||| |||||||||||||    
T  12737305 tgtcatgtacacgtgtcaacaagacagccacgtgtacaaggactaatttgatggaaa 12737361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 114
Target Start/End: Complemental strand, 36057580 - 36057532
Alignment:
Q  66 catgttgtgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaa 114  Q
    |||||||||||||| ||||||||||||||||||| || ||| |||||||    
T  36057580 catgttgtgttgtcatgtacacgtgtcaacaaggcagccacatgtacaa 36057532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 76 - 129
Target Start/End: Original strand, 12800128 - 12800181
Alignment:
Q  76 tgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatgg 129  Q
    |||| ||||||||||||||||||  || ||||||||||| ||| ||||||||||    
T  12800128 tgtcatgtacacgtgtcaacaagacagccacgtgtacaaggactaatttgatgg 12800181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 73 - 134
Target Start/End: Complemental strand, 30431 - 30370
Alignment:
Q  73 tgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatggaaacg 134  Q
    ||||||| |||||||||||| |||||||||||||||||| || |||||||||||| ||||||    
T  30431 tgttgtcttgtacacgtgtctacaaggaagtcacgtgtataatgaccaatttgattgaaacg 30370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 73 - 134
Target Start/End: Original strand, 4623 - 4684
Alignment:
Q  73 tgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatggaaacg 134  Q
    ||||||| |||||||||||| ||||||||| ||||||||||| |||||||||||| ||||||    
T  4623 tgttgtcttgtacacgtgtctacaaggaagccacgtgtacaaggaccaatttgattgaaacg 4684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0146
Description:

Target: scaffold0146; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 81 - 127
Target Start/End: Complemental strand, 15945 - 15899
Alignment:
Q  81 tgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgat 127  Q
    |||||| ||||||||||||||||||||||||||| ||||||||||||    
T  15945 tgtacaggtgtcaacaaggaagtcacgtgtacaaggaccaatttgat 15899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 67 - 132
Target Start/End: Original strand, 37362 - 37427
Alignment:
Q  67 atgttgtgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatggaaa 132  Q
    ||||||||||||| | ||||||||||||||||| |  ||||||||||| ||| |||||||||||||    
T  37362 atgttgtgttgtcctttacacgtgtcaacaaggcaaccacgtgtacaaggactaatttgatggaaa 37427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1454 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold1454
Description:

Target: scaffold1454; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 66 - 132
Target Start/End: Original strand, 1419 - 1485
Alignment:
Q  66 catgttgtgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatggaaa 132  Q
    |||| ||||||||| ||||||||||||||||||| |  ||||||||||| ||| || ||||||||||    
T  1419 catgctgtgttgtcttgtacacgtgtcaacaaggcaaccacgtgtacaaggactaaattgatggaaa 1485  T

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Target: scaffold0564 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0564
Description:

Target: scaffold0564; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 71 - 132
Target Start/End: Original strand, 8422 - 8483
Alignment:
Q  71 tgtgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatggaaa 132  Q
    ||||||||| ||||||||||||||||||| || |||||||||||  || || ||||||||||    
T  8422 tgtgttgtcttgtacacgtgtcaacaaggcagccacgtgtacaagtactaaattgatggaaa 8483  T

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Target: scaffold0722 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0722
Description:

Target: scaffold0722; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 134
Target Start/End: Complemental strand, 4816 - 4748
Alignment:
Q  66 catgttgtgttgtcgtgtacacgtgtcaacaaggaagtcacgtgtacaaagaccaatttgatggaaacg 134  Q
    ||||||||| |||  || |||||||||| | | |||| || |||||||| |||||||||||||||||||    
T  4816 catgttgtgatgtgttgcacacgtgtcatccacgaagccatgtgtacaaggaccaatttgatggaaacg 4748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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