View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10469_low_11 (Length: 206)
Name: NF10469_low_11
Description: NF10469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10469_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 176; Significance: 5e-95; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 45935948 - 45936147
Alignment:
| Q |
1 |
ccgtcaatgtaaagattttttcactcgtaatttttatatcattaaaagcatgtaactttaacgataactacttctaaactcgtacatatgattgattgtg |
100 |
Q |
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| T |
45935948 |
ccgtcaatgtaaagattttttcactcgtaatttttatatcattaaaaccatttaactttaacgataactacttctaaactcgtacatatgattgattgtg |
45936047 |
T |
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| Q |
101 |
aatttttgatagtgtaaattttcctctattcactgattccatatctttccaatgtaggaaggaaccgaaagttttcagtttgaagagaacatgaaatttt |
200 |
Q |
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| T |
45936048 |
aattgttgatagtgtaaattttcctctactcactgattccatatttttccaatgtaggaaggaaccgaaagttttcggtttgaagagaacatgaaatttt |
45936147 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 82; Significance: 6e-39; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 30 - 200
Target Start/End: Original strand, 15818012 - 15818166
Alignment:
| Q |
30 |
atttttatatcattaaaagcatgtaactttaacgataactacttctaaactcgtacatatgattgattgtgaatttttgatagtgtaaattttcctctat |
129 |
Q |
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| T |
15818012 |
atttttatatcattaaaaccatttaactttaacgataacgtcttctaaactcgtacatatgattgattgt----------------aaattttcctctac |
15818095 |
T |
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| Q |
130 |
tcactgattccatatctttccaatgtaggaaggaaccgaaagttttcagtttgaagagaacatgaaatttt |
200 |
Q |
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| T |
15818096 |
tcactgattccctatttttccaatgtaggaaggaaccggaagttttcggtttgaagagaacatgaaatttt |
15818166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 119 - 192
Target Start/End: Original strand, 5164552 - 5164626
Alignment:
| Q |
119 |
ttttcctctattcactgattccatatctttc-caatgtaggaaggaaccgaaagttttcagtttgaagagaacat |
192 |
Q |
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| T |
5164552 |
ttttcctctcctcactgattccttatatttttcaatgtaggcaggaaccgaaagttttcagtttgatgagaacat |
5164626 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 119 - 200
Target Start/End: Original strand, 5191949 - 5192031
Alignment:
| Q |
119 |
ttttcctctattcactgattccatatctt-tccaatgtaggaaggaaccgaaagttttcagtttgaagagaacatgaaatttt |
200 |
Q |
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| T |
5191949 |
ttttcctctcctcactgattccttattttgtccgatgtaggaaggtcccgaaagttttcagtttgaagagaacaagaattttt |
5192031 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 101
Target Start/End: Original strand, 5164349 - 5164446
Alignment:
| Q |
5 |
caatgtaaagatttttt-cactcgtaatttttatatcattaaaagcatgtaactttaacgataactacttctaaactcgtacatatgattgattgtga |
101 |
Q |
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| T |
5164349 |
caatttaaagattttttacacttgcaattgtcatatcattgaaatcatttaacttcaatgataactacttctaaagttgtacatataattaattgtga |
5164446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 5186136 - 5186214
Alignment:
| Q |
1 |
ccgtcaatgtaaagatttttt-cactcgtaatttttatatcattaaaagcatgtaactttaacgataactacttctaaa |
78 |
Q |
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| T |
5186136 |
ccgtcaatttacagattttttacactcgcaattgtcatatcattaaaaccatttaacttcattgataactacttctaaa |
5186214 |
T |
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