View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1046_high_4 (Length: 515)

Name: NF1046_high_4
Description: NF1046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1046_high_4
NF1046_high_4
[»] chr7 (6 HSPs)
chr7 (180-419)||(1971118-1971365)
chr7 (161-395)||(37362401-37362622)
chr7 (11-83)||(1971415-1971487)
chr7 (287-375)||(7841360-7841448)
chr7 (186-239)||(7841460-7841512)
chr7 (78-118)||(1971360-1971400)
[»] chr1 (8 HSPs)
chr1 (265-419)||(40981488-40981640)
chr1 (265-419)||(50290459-50290611)
chr1 (165-264)||(31770870-31770966)
chr1 (185-263)||(7607901-7607977)
chr1 (342-415)||(29836269-29836342)
chr1 (296-391)||(27843642-27843737)
chr1 (287-391)||(6919604-6919708)
chr1 (293-386)||(14184747-14184840)
[»] chr3 (10 HSPs)
chr3 (186-419)||(53689267-53689487)
chr3 (288-411)||(12812821-12812944)
chr3 (185-395)||(52311477-52311676)
chr3 (287-419)||(45458409-45458540)
chr3 (265-361)||(14459162-14459256)
chr3 (165-252)||(52130959-52131043)
chr3 (293-386)||(52130851-52130943)
chr3 (342-415)||(29129160-29129233)
chr3 (268-363)||(25489560-25489653)
chr3 (373-420)||(43399475-43399522)
[»] chr8 (4 HSPs)
chr8 (11-131)||(19962380-19962499)
chr8 (292-419)||(29729269-29729396)
chr8 (342-391)||(16395613-16395662)
chr8 (296-391)||(765562-765657)
[»] chr4 (17 HSPs)
chr4 (265-419)||(14209362-14209514)
chr4 (265-419)||(14210313-14210465)
chr4 (265-419)||(14211282-14211434)
chr4 (265-419)||(14212233-14212385)
chr4 (265-419)||(14214170-14214322)
chr4 (265-419)||(14215139-14215291)
chr4 (265-419)||(14216108-14216260)
chr4 (265-419)||(14217059-14217211)
chr4 (265-419)||(14218010-14218162)
chr4 (265-419)||(14219949-14220101)
chr4 (265-419)||(14220900-14221052)
chr4 (288-419)||(14213223-14213354)
chr4 (288-419)||(14219001-14219132)
chr4 (265-419)||(14221869-14222021)
chr4 (265-419)||(14222838-14222990)
chr4 (165-376)||(41810243-41810445)
chr4 (310-391)||(1068910-1068991)
[»] chr2 (1 HSPs)
chr2 (265-419)||(31409598-31409750)
[»] scaffold0096 (1 HSPs)
scaffold0096 (287-391)||(32812-32916)


Alignment Details
Target: chr7 (Bit Score: 127; Significance: 2e-65; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 180 - 419
Target Start/End: Complemental strand, 1971365 - 1971118
Alignment:
Q  180 agaaagagaagaagagggaagcatggggctctgtacagtttgcattggtattgaacaa------attaatggagaggtgagatagtaacat----tgttt 269  Q
    |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||      | |||||||||||||||||||||||||    ||| |    
T  1971365 agaaggagaagaagagggaagcatggggctctgtagagtttgcattggtattgaacaataaataaataatggagaggtgagatagtaacatcagttgtgt 1971266  T
Q  270 tgtttccctacatgcacgtgtatcaattttcaatgagtgagatttgatcaacggctgatatgttaacctcctctaattacaatgatctaacggtttggat 369  Q
    |||||| ||  |||| ||||||||||||||||| ||||||  ||||||||||||||||| || |||||||| ||||||| |||||||||||||| |||||    
T  1971265 tgtttctctgtatgcgcgtgtatcaattttcaaagagtga--tttgatcaacggctgatgtgctaacctcccctaattataatgatctaacggtctggat 1971168  T
Q  370 agattggagccaaaaaagtaggtttaatgttaggaaattagggtaagcat 419  Q
    ||||||||||||||||||||| ||||  ||| ||||||||||||||||||    
T  1971167 agattggagccaaaaaagtagatttagggtttggaaattagggtaagcat 1971118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 161 - 395
Target Start/End: Original strand, 37362401 - 37362622
Alignment:
Q  161 tgtttaatcaaaatgtgacagaaagagaagaagagggaagcatggggctctgtacagtttgcattggtattgaacaaattaatggagaggtgagatagta 260  Q
    ||||||||||||||||||||||  |||||||||||||||||||||||||||||| |||||||||  ||||||||||||| |||||||| |    | ||      
T  37362401 tgtttaatcaaaatgtgacagagggagaagaagagggaagcatggggctctgtagagtttgcatcagtattgaacaaat-aatggagaaga---agag-- 37362494  T
Q  261 acattgttttgtttccctacatgcacgtgtatcaattttcaatgagtgagatttgatcaacggctgatatgttaacctcctctaattacaatgatctaac 360  Q
         ||||||||||||||  ||| ||||| ||||||||||| ||||||||||||||||||||||||| || ||||| |  |||||||||||||||||||    
T  37362495 -----gttttgtttcccta--tgcgcgtgtgtcaattttcaaggagtgagatttgatcaacggctgatgtgctaaccgctcctaattacaatgatctaac 37362587  T
Q  361 ggtttggatagattggagccaaaaaagtaggttta 395  Q
    | | |||||||||||||||||||||||||||||||    
T  37362588 gatctggatagattggagccaaaaaagtaggttta 37362622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 11 - 83
Target Start/End: Complemental strand, 1971487 - 1971415
Alignment:
Q  11 cagagacggttgcagcggagacaaaacgaccaaaattgatgccgccatggatgatggtggtgatacggggggt 83  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  1971487 cagagacggttgcagcggagacaaaacgaccaaaattgatgccgccatggatgatggtggtgatacggagggt 1971415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 287 - 375
Target Start/End: Complemental strand, 7841448 - 7841360
Alignment:
Q  287 gtgtatcaattttcaatgagtgagatttgatcaacggctgatatgttaacctcctctaattacaatgatctaacggtttggatagattg 375  Q
    |||| ||||||||||| |||||||||||||||||||||||||  | ||||  |  ||| |||||||||||||||||| ||||| |||||    
T  7841448 gtgtttcaattttcaaggagtgagatttgatcaacggctgatgcgctaacagctcctacttacaatgatctaacggtctggattgattg 7841360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 186 - 239
Target Start/End: Complemental strand, 7841512 - 7841460
Alignment:
Q  186 agaagaagagggaagcatggggctctgtacagtttgcattggtattgaacaaat 239  Q
    |||||||||||||||||||||| |||||| |||||||| |||||||||||||||    
T  7841512 agaagaagagggaagcatggggttctgtagagtttgca-tggtattgaacaaat 7841460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 78 - 118
Target Start/End: Complemental strand, 1971400 - 1971360
Alignment:
Q  78 gggggtaggggaggaagttgaggaaaggaagatgaagaagg 118  Q
    |||||||||||| |||| |||||||||||||||||||||||    
T  1971400 gggggtaggggaagaaggtgaggaaaggaagatgaagaagg 1971360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 96; Significance: 7e-47; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 265 - 419
Target Start/End: Original strand, 40981488 - 40981640
Alignment:
Q  265 tgttttgtttccctacatgcacgtgtatcaattttcaatgagtgagatttgatcaacggctgatatgttaacctcctctaattacaatgatctaacggtt 364  Q
    ||||| |||||||||  ||| |||||||||||||| || ||||||| ||||||||||||||||  || |||||||||||||||||||||||||||||||     
T  40981488 tgtttggtttcccta--tgcgcgtgtatcaatttttaaagagtgagttttgatcaacggctgaagtgctaacctcctctaattacaatgatctaacggtc 40981585  T
Q  365 tggatagattggagccaaaaaagtaggtttaatgttaggaaattagggtaagcat 419  Q
    |||||||||||||||||||||||||||||||  ||| ||||||||||||||||||    
T  40981586 tggatagattggagccaaaaaagtaggtttagggtttggaaattagggtaagcat 40981640  T

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Target: chr1; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 265 - 419
Target Start/End: Complemental strand, 50290611 - 50290459
Alignment:
Q  265 tgttttgtttccctacatgcacgtgtatcaattttcaatgagtgagatttgatcaacggctgatatgttaacctcctctaattacaatgatctaacggtt 364  Q
    |||||||||||||||  ||  ||| ||||||||||||| ||||||||||| ||||||| ||||| || |||||||||||||||| ||||||||||||||     
T  50290611 tgttttgtttcccta--tgagcgtctatcaattttcaaggagtgagattttatcaacgactgatgtgctaacctcctctaattataatgatctaacggtc 50290514  T
Q  365 tggatagattggagccaaaaaagtaggtttaatgttaggaaattagggtaagcat 419  Q
    |||||| ||||||||||||||| ||||||||  ||| |||| ||||| |||||||    
T  50290513 tggataaattggagccaaaaaaataggtttagggtttggaatttaggttaagcat 50290459  T

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Target: chr1; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 165 - 264
Target Start/End: Original strand, 31770870 - 31770966
Alignment:
Q  165 taatcaaaatgtgacagaaagagaagaagagggaagcatggggctctgtacagtttgcattggtattgaacaaattaatggagaggtgagatagtaacat 264  Q
    ||||||||| ||||||||  |||||||||||||||||||||||| ||||| ||||||||| ||||||||||||  ||||||||||||| |||| ||||||    
T  31770870 taatcaaaa-gtgacagagggagaagaagagggaagcatggggcactgtagagtttgcatgggtattgaacaa--taatggagaggtgtgataataacat 31770966  T

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Target: chr1; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 185 - 263
Target Start/End: Original strand, 7607901 - 7607977
Alignment:
Q  185 gagaagaagagggaagcatggggctctgtacagtttgcattggtattgaacaaattaatggagaggtgagatagtaaca 263  Q
    |||||||||||||||||||||||| ||||| ||||||||| ||||||||||||  ||||||||||||| |||| |||||    
T  7607901 gagaagaagagggaagcatggggcactgtagagtttgcatgggtattgaacaa--taatggagaggtgtgataataaca 7607977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 342 - 415
Target Start/End: Complemental strand, 29836342 - 29836269
Alignment:
Q  342 ctaattacaatgatctaacggtttggatagattggagccaaaaaagtaggtttaatgttaggaaattagggtaa 415  Q
    ||||||| | ||||||||||||  ||||||||||||||||||||||||||||||  ||| || |||||||||||    
T  29836342 ctaattagattgatctaacggtcaggatagattggagccaaaaaagtaggtttagggtttggcaattagggtaa 29836269  T

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Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 296 - 391
Target Start/End: Original strand, 27843642 - 27843737
Alignment:
Q  296 ttttcaatgagtgagatttgatc-aacggctgatatgttaacctcctctaattacaatgatctaacggtttggatagattggagccaaaaaagtagg 391  Q
    ||||||| ||||| ||||||||| |||||||||| || ||| || || |||||||||||||||||||||  ||||| | ||||||||||||||||||    
T  27843642 ttttcaaggagtgtgatttgatctaacggctgatgtgctaatcttct-taattacaatgatctaacggtcaggataaaatggagccaaaaaagtagg 27843737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 287 - 391
Target Start/End: Complemental strand, 6919708 - 6919604
Alignment:
Q  287 gtgtatcaattttcaatgagtgagatttgatc-aacggctgatatgttaacctcctctaattacaatgatctaacggtttggatagattggagccaaaaa 385  Q
    |||| ||| ||||||| ||||| ||||||||| |||||||||| || |||  |  |||||||||||||||||||||||  | ||| | ||||||||||||    
T  6919708 gtgtttcatttttcaaagagtgtgatttgatctaacggctgatgtgctaatttt-tctaattacaatgatctaacggtcagaataaaatggagccaaaaa 6919610  T
Q  386 agtagg 391  Q
    ||||||    
T  6919609 agtagg 6919604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 293 - 386
Target Start/End: Complemental strand, 14184840 - 14184747
Alignment:
Q  293 caattttcaatgagtgagatttgatcaacggctgatatgttaacctcctctaattacaatgatctaacggtttggatagattggagccaaaaaa 386  Q
    ||||||| || |||||| |||||||||| | ||||| || ||||| || ||| ||| ||||||||||| |||||||| |||||| ||| |||||    
T  14184840 caatttttaaggagtgacatttgatcaatgactgatgtgctaaccgcccctacttataatgatctaacagtttggattgattggcgcctaaaaa 14184747  T

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Target: chr3 (Bit Score: 91; Significance: 7e-44; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 186 - 419
Target Start/End: Complemental strand, 53689487 - 53689267
Alignment:
Q  186 agaagaagagggaagcatggggctctgtacagtttgcattggtattgaacaaattaatggagaggtgagatagtaacattgttttgtttccctacatgca 285  Q
    ||||||||||||||||||||||||||||| ||||||||| |||||||||||||| ||| ||||    |||  |       ||||||||||||||  |||     
T  53689487 agaagaagagggaagcatggggctctgtagagtttgcatcggtattgaacaaat-aatagaga----agaaggg------gttttgtttcccta--tgcg 53689401  T
Q  286 cgtgtatcaattttcaatgagtgagatttgatcaacggctgatatgttaacctcctctaattacaatgatctaacggtttggatagattggagccaaaaa 385  Q
    ||||| | ||||||||| ||||||||||||||||| ||||||| || ||||||||  |||||||||||||||||||||  ||||||||||||||||||||    
T  53689400 cgtgtgttaattttcaaggagtgagatttgatcaatggctgatgtgctaacctcccttaattacaatgatctaacggtcaggatagattggagccaaaaa 53689301  T
Q  386 agtaggtttaatgttaggaaattagggtaagcat 419  Q
    ||||||||||  ||| || |||||||||||||||    
T  53689300 agtaggtttagggtttggcaattagggtaagcat 53689267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 288 - 411
Target Start/End: Original strand, 12812821 - 12812944
Alignment:
Q  288 tgtatcaattttcaatgagtgagatttgatcaacggctgatatgttaacctcctctaattacaatgatctaacggtttggatagattggagccaaaaaag 387  Q
    ||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||||||| ||||||||||||||| |||||||    
T  12812821 tgtatcaattttcaatgagtgagatttgatcaacggctgatgtgctaacctcccctaattacaatgatctaacggtctggatagattggagcgaaaaaag 12812920  T
Q  388 taggtttaatgttaggaaattagg 411  Q
    |||||||   ||| ||||||||||    
T  12812921 taggtttggggtttggaaattagg 12812944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 185 - 395
Target Start/End: Original strand, 52311477 - 52311676
Alignment:
Q  185 gagaagaagagggaagcatggggctctgtacagtttgcattggtattgaacaaattaatggagaggtgagatagtaacattgttttgtttccctacatgc 284  Q
    ||||||||||||| | |||||||||||||| ||||||||| |||||||||||||| |||||||| |    | ||       |||||||||||| | ||||    
T  52311477 gagaagaagagggcaacatggggctctgtagagtttgcatcggtattgaacaaat-aatggagaaga---agag-------gttttgtttccccatatgc 52311565  T
Q  285 acgtgtatcaattttcaatgagtgagatttgatcaacggctgatatgttaacctcctctaattacaatgatctaacggtttggatagattggagccaaaa 384  Q
     | ||| ||||||||||| ||||||||||||||||||| ||||| || |||||||| ||||||||||| ||||||||||  ||||||||||||| |||||    
T  52311566 gcatgtgtcaattttcaaggagtgagatttgatcaacgactgatgtgctaacctcccctaattacaatcatctaacggtcaggatagattggaggcaaaa 52311665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 287 - 419
Target Start/End: Original strand, 45458409 - 45458540
Alignment:
Q  287 gtgtatcaattttcaatgagtgagatttgatcaacggctgatatgttaacc-tcctctaattacaatgatctaacggtttggatagattggagccaaaaa 385  Q
    |||| ||||||||||| ||||||||||||||||| |||| || |||||||| |||| ||||||||||||||||||| ||||||| |||||||| ||||||    
T  45458409 gtgtttcaattttcaaggagtgagatttgatcaagggctcatgtgttaaccatcct-taattacaatgatctaacgatttggatggattggagtcaaaaa 45458507  T
Q  386 agtaggtttaatgttaggaaattagggtaagcat 419  Q
    ||||| ||||| ||| ||||||||||||||||||    
T  45458508 agtagatttaaggtt-ggaaattagggtaagcat 45458540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 265 - 361
Target Start/End: Original strand, 14459162 - 14459256
Alignment:
Q  265 tgttttgtttccctacatgcacgtgtatcaattttcaatgagtgagatttgatcaacggctgatatgttaacctcctctaattacaatgatctaacg 361  Q
    |||||||||||||||  ||| ||||||||||||||||| ||||||||||||||||||| ||||| || |||||||| ||| ||| ||||||||||||    
T  14459162 tgttttgtttcccta--tgctcgtgtatcaattttcaaggagtgagatttgatcaacgactgatgtgctaacctcccctagttataatgatctaacg 14459256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 165 - 252
Target Start/End: Complemental strand, 52131043 - 52130959
Alignment:
Q  165 taatcaaaatgtgacagaaagagaagaagagggaagcatggggctctgtacagtttgcattggtattgaacaaattaatggagaggtg 252  Q
    ||||||||| ||||||||  |||||||||||||||||||||||| ||||| ||||||||| ||||||||||||  |||||||||||||    
T  52131043 taatcaaaa-gtgacagagggagaagaagagggaagcatggggcactgtagagtttgcatcggtattgaacaa--taatggagaggtg 52130959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 293 - 386
Target Start/End: Complemental strand, 52130943 - 52130851
Alignment:
Q  293 caattttcaatgagtgagatttgatcaacggctgatatgttaacctcctctaattacaatgatctaacggtttggatagattggagccaaaaaa 386  Q
    |||||||||| ||||||||||||||||| || |||| || |||||||| ||| |||||||||||||||||| ||||| |||||| ||| |||||    
T  52130943 caattttcaa-gagtgagatttgatcaatggttgatgtgctaacctcccctacttacaatgatctaacggtctggattgattggcgcctaaaaa 52130851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 342 - 415
Target Start/End: Complemental strand, 29129233 - 29129160
Alignment:
Q  342 ctaattacaatgatctaacggtttggatagattggagccaaaaaagtaggtttaatgttaggaaattagggtaa 415  Q
    ||||||| | ||||||||||||  ||||||||||||||||||||||||||||||  ||| || |||||||||||    
T  29129233 ctaattagattgatctaacggtcaggatagattggagccaaaaaagtaggtttagggtttggcaattagggtaa 29129160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 268 - 363
Target Start/End: Complemental strand, 25489653 - 25489560
Alignment:
Q  268 tttgtttccctacatgcacgtgtatcaattttcaatgagtgagatttgatcaacggctgatatgttaacctcctctaattacaatgatctaacggt 363  Q
    ||||||||||||  ||||||||| |||||||| ||  ||||||||||||| |||||||||| |  ||||| |  ||||||||||||||||||||||    
T  25489653 tttgtttcccta--tgcacgtgtttcaatttttaagaagtgagatttgataaacggctgatgtactaaccgctcctaattacaatgatctaacggt 25489560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 373 - 420
Target Start/End: Complemental strand, 43399522 - 43399475
Alignment:
Q  373 ttggagccaaaaaagtaggtttaatgttaggaaattagggtaagcatt 420  Q
    |||||||||||||  |||| |||| |||||||||||||||||||||||    
T  43399522 ttggagccaaaaacttaggattaaggttaggaaattagggtaagcatt 43399475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 85; Significance: 3e-40; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 11 - 131
Target Start/End: Complemental strand, 19962499 - 19962380
Alignment:
Q  11 cagagacggttgcagcggagacaaaacgaccaaaattgatgccgccatggatgatggtggtgatacggggggtaggggaggaagttgaggaaaggaagat 110  Q
    |||||||||||||||  ||||||||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||| |||    
T  19962499 cagagacggttgcagtagagacaaaacgaccaaagttggtgccgccatggatgatggtggtgatacg-ggggtaggggaagaaggtgaggaaaggatgat 19962401  T
Q  111 gaagaagggttcaagaaacca 131  Q
    |||||||||||||||||||||    
T  19962400 gaagaagggttcaagaaacca 19962380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 292 - 419
Target Start/End: Original strand, 29729269 - 29729396
Alignment:
Q  292 tcaattttcaatgagtgagatttgatcaacggctgatatgttaacctcctctaattacaatgatctaacggtttggatagattggagccaaaaaagtagg 391  Q
    ||||||||||  |||||||||||||||||||| |||| |||||||| |  |||||||||||||||||| ||| ||||| |||||||||||||||| ||||    
T  29729269 tcaattttcatggagtgagatttgatcaacggttgatgtgttaaccgctcctaattacaatgatctaatggtctggattgattggagccaaaaaattagg 29729368  T
Q  392 tttaatgttaggaaattagggtaagcat 419  Q
    ||||| ||| || |||||||||||||||    
T  29729369 tttaaggtttggcaattagggtaagcat 29729396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 342 - 391
Target Start/End: Complemental strand, 16395662 - 16395613
Alignment:
Q  342 ctaattacaatgatctaacggtttggatagattggagccaaaaaagtagg 391  Q
    ||||||||||||||||||||||  ||||| | ||||||||||||||||||    
T  16395662 ctaattacaatgatctaacggtcaggataaaatggagccaaaaaagtagg 16395613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 296 - 391
Target Start/End: Complemental strand, 765657 - 765562
Alignment:
Q  296 ttttcaatgagtgagatttgatc-aacggctgatatgttaacctcctctaattacaatgatctaacggtttggatagattggagccaaaaaagtagg 391  Q
    ||||||| ||||| |||||| || |||||||||| || ||| || | |||||||||| ||||||||| |  ||||| | ||||||||||||||||||    
T  765657 ttttcaaagagtgtgatttggtctaacggctgatgtgctaatcttc-ctaattacaaggatctaacgatcaggataaaatggagccaaaaaagtagg 765562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 84; Significance: 1e-39; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 265 - 419
Target Start/End: Original strand, 14209362 - 14209514
Alignment:
Q  265 tgttttgtttccctacatgcacgtgtatcaattttcaatgagtgagatttgatcaacggctgatatgttaacctcctctaattacaatgatctaacggtt 364  Q
    |||||||||| ||||  ||| ||||||||||||||||| || |||||||||||||| |||| || || |||||||| ||||||||||||||||||||||     
T  14209362 tgttttgttttccta--tgcgcgtgtatcaattttcaaggaatgagatttgatcaatggctcatgtgctaacctcccctaattacaatgatctaacggtc 14209459  T
Q  365 tggatagattggagccaaaaaagtaggtttaatgttaggaaattagggtaagcat 419  Q
    ||||||| ||||||||||||||||||||| |  ||| ||||||||||||||||||    
T  14209460 tggatagtttggagccaaaaaagtaggttaagggtttggaaattagggtaagcat 14209514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 265 - 419
Target Start/End: Original strand, 14210313 - 14210465
Alignment:
Q  265 tgttttgtttccctacatgcacgtgtatcaattttcaatgagtgagatttgatcaacggctgatatgttaacctcctctaattacaatgatctaacggtt 364  Q
    |||||||||| ||||  ||| ||||||||||||||||| || |||||||||||||| |||| || || |||||||| ||||||||||||||||||||||     
T  14210313 tgttttgttttccta--tgcgcgtgtatcaattttcaaggaatgagatttgatcaatggctcatgtgctaacctcccctaattacaatgatctaacggtc 14210410  T
Q  365 tggatagattggagccaaaaaagtaggtttaatgttaggaaattagggtaagcat 419  Q
    ||||||| ||||||||||||||||||||| |  ||| ||||||||||||||||||    
T  14210411 tggatagtttggagccaaaaaagtaggttaagggtttggaaattagggtaagcat 14210465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 265 - 419
Target Start/End: Original strand, 14211282 - 14211434
Alignment:
Q  265 tgttttgtttccctacatgcacgtgtatcaattttcaatgagtgagatttgatcaacggctgatatgttaacctcctctaattacaatgatctaacggtt 364  Q
    |||||||||| ||||  ||| ||||||||||||||||| || |||||||||||||| |||| || || |||||||| ||||||||||||||||||||||     
T  14211282 tgttttgttttccta--tgcgcgtgtatcaattttcaaggaatgagatttgatcaatggctcatgtgctaacctcccctaattacaatgatctaacggtc 14211379  T
Q  365 tggatagattggagccaaaaaagtaggtttaatgttaggaaattagggtaagcat 419  Q
    ||||||| ||||||||||||||||||||| |  ||| ||||||||||||||||||    
T  14211380 tggatagtttggagccaaaaaagtaggttaagggtttggaaattagggtaagcat 14211434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 265 - 419
Target Start/End: Original strand, 14212233 - 14212385
Alignment:
Q  265 tgttttgtttccctacatgcacgtgtatcaattttcaatgagtgagatttgatcaacggctgatatgttaacctcctctaattacaatgatctaacggtt 364  Q
    |||||||||| ||||  ||| ||||||||||||||||| || |||||||||||||| |||| || || |||||||| ||||||||||||||||||||||     
T  14212233 tgttttgttttccta--tgcgcgtgtatcaattttcaaggaatgagatttgatcaatggctcatgtgctaacctcccctaattacaatgatctaacggtc 14212330  T
Q  365 tggatagattggagccaaaaaagtaggtttaatgttaggaaattagggtaagcat 419  Q
    ||||||| ||||||||||||||||||||| |  ||| ||||||||||||||||||    
T  14212331 tggatagtttggagccaaaaaagtaggttaagggtttggaaattagggtaagcat 14212385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 265 - 419
Target Start/End: Original strand, 14214170 - 14214322
Alignment:
Q  265 tgttttgtttccctacatgcacgtgtatcaattttcaatgagtgagatttgatcaacggctgatatgttaacctcctctaattacaatgatctaacggtt 364  Q
    |||||||||| ||||  ||| ||||||||||||||||| || |||||||||||||| |||| || || |||||||| ||||||||||||||||||||||     
T  14214170 tgttttgttttccta--tgcgcgtgtatcaattttcaaggaatgagatttgatcaatggctcatgtgctaacctcccctaattacaatgatctaacggtc 14214267  T
Q  365 tggatagattggagccaaaaaagtaggtttaatgttaggaaattagggtaagcat 419  Q
    ||||||| ||||||||||||||||||||| |  ||| ||||||||||||||||||    
T  14214268 tggatagtttggagccaaaaaagtaggttaagggtttggaaattagggtaagcat 14214322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 265 - 419
Target Start/End: Original strand, 14215139 - 14215291
Alignment:
Q  265 tgttttgtttccctacatgcacgtgtatcaattttcaatgagtgagatttgatcaacggctgatatgttaacctcctctaattacaatgatctaacggtt 364  Q
    |||||||||| ||||  ||| ||||||||||||||||| || |||||||||||||| |||| || || |||||||| ||||||||||||||||||||||     
T  14215139 tgttttgttttccta--tgcgcgtgtatcaattttcaaggaatgagatttgatcaatggctcatgtgctaacctcccctaattacaatgatctaacggtc 14215236  T
Q  365 tggatagattggagccaaaaaagtaggtttaatgttaggaaattagggtaagcat 419  Q
    ||||||| ||||||||||||||||||||| |  ||| ||||||||||||||||||    
T  14215237 tggatagtttggagccaaaaaagtaggttaagggtttggaaattagggtaagcat 14215291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 265 - 419
Target Start/End: Original strand, 14216108 - 14216260
Alignment:
Q  265 tgttttgtttccctacatgcacgtgtatcaattttcaatgagtgagatttgatcaacggctgatatgttaacctcctctaattacaatgatctaacggtt 364  Q
    |||||||||| ||||  ||| ||||||||||||||||| || |||||||||||||| |||| || || |||||||| ||||||||||||||||||||||     
T  14216108 tgttttgttttccta--tgcgcgtgtatcaattttcaaggaatgagatttgatcaatggctcatgtgctaacctcccctaattacaatgatctaacggtc 14216205  T
Q  365 tggatagattggagccaaaaaagtaggtttaatgttaggaaattagggtaagcat 419  Q
    ||||||| ||||||||||||||||||||| |  ||| ||||||||||||||||||    
T  14216206 tggatagtttggagccaaaaaagtaggttaagggtttggaaattagggtaagcat 14216260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 265 - 419
Target Start/End: Original strand, 14217059 - 14217211
Alignment:
Q  265 tgttttgtttccctacatgcacgtgtatcaattttcaatgagtgagatttgatcaacggctgatatgttaacctcctctaattacaatgatctaacggtt 364  Q
    |||||||||| ||||  ||| ||||||||||||||||| || |||||||||||||| |||| || || |||||||| ||||||||||||||||||||||     
T  14217059 tgttttgttttccta--tgcgcgtgtatcaattttcaaggaatgagatttgatcaatggctcatgtgctaacctcccctaattacaatgatctaacggtc 14217156  T
Q  365 tggatagattggagccaaaaaagtaggtttaatgttaggaaattagggtaagcat 419  Q
    ||||||| ||||||||||||||||||||| |  ||| ||||||||||||||||||    
T  14217157 tggatagtttggagccaaaaaagtaggttaagggtttggaaattagggtaagcat 14217211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 265 - 419
Target Start/End: Original strand, 14218010 - 14218162
Alignment:
Q  265 tgttttgtttccctacatgcacgtgtatcaattttcaatgagtgagatttgatcaacggctgatatgttaacctcctctaattacaatgatctaacggtt 364  Q
    |||||||||| ||||  ||| ||||||||||||||||| || |||||||||||||| |||| || || |||||||| ||||||||||||||||||||||     
T  14218010 tgttttgttttccta--tgcgcgtgtatcaattttcaaggaatgagatttgatcaatggctcatgtgctaacctcccctaattacaatgatctaacggtc 14218107  T
Q  365 tggatagattggagccaaaaaagtaggtttaatgttaggaaattagggtaagcat 419  Q
    ||||||| ||||||||||||||||||||| |  ||| ||||||||||||||||||    
T  14218108 tggatagtttggagccaaaaaagtaggttaagggtttggaaattagggtaagcat 14218162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 265 - 419
Target Start/End: Original strand, 14219949 - 14220101
Alignment:
Q  265 tgttttgtttccctacatgcacgtgtatcaattttcaatgagtgagatttgatcaacggctgatatgttaacctcctctaattacaatgatctaacggtt 364  Q
    |||||||||| ||||  ||| ||||||||||||||||| || |||||||||||||| |||| || || |||||||| ||||||||||||||||||||||     
T  14219949 tgttttgttttccta--tgcgcgtgtatcaattttcaaggaatgagatttgatcaatggctcatgtgctaacctcccctaattacaatgatctaacggtc 14220046  T
Q  365 tggatagattggagccaaaaaagtaggtttaatgttaggaaattagggtaagcat 419  Q
    ||||||| ||||||||||||||||||||| |  ||| ||||||||||||||||||    
T  14220047 tggatagtttggagccaaaaaagtaggttaagggtttggaaattagggtaagcat 14220101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 265 - 419
Target Start/End: Original strand, 14220900 - 14221052
Alignment:
Q  265 tgttttgtttccctacatgcacgtgtatcaattttcaatgagtgagatttgatcaacggctgatatgttaacctcctctaattacaatgatctaacggtt 364  Q
    |||||||||| ||||  ||| ||||||||||||||||| || |||||||||||||| |||| || || |||||||| ||||||||||||||||||||||     
T  14220900 tgttttgttttccta--tgcgcgtgtatcaattttcaaggaatgagatttgatcaatggctcatgtgctaacctcccctaattacaatgatctaacggtc 14220997  T
Q  365 tggatagattggagccaaaaaagtaggtttaatgttaggaaattagggtaagcat 419  Q
    ||||||| ||||||||||||||||||||| |  ||| ||||||||||||||||||    
T  14220998 tggatagtttggagccaaaaaagtaggttaagggtttggaaattagggtaagcat 14221052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 288 - 419
Target Start/End: Original strand, 14213223 - 14213354
Alignment:
Q  288 tgtatcaattttcaatgagtgagatttgatcaacggctgatatgttaacctcctctaattacaatgatctaacggtttggatagattggagccaaaaaag 387  Q
    ||||||||||||||| || |||||||||||||| |||| || || |||||||| |||||||||||||||||||||| ||||||| |||||||||||||||    
T  14213223 tgtatcaattttcaaggaatgagatttgatcaatggctcatgtgctaacctcccctaattacaatgatctaacggtctggatagtttggagccaaaaaag 14213322  T
Q  388 taggtttaatgttaggaaattagggtaagcat 419  Q
    |||||| |  ||| ||||||||||||||||||    
T  14213323 taggttaagggtttggaaattagggtaagcat 14213354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 288 - 419
Target Start/End: Original strand, 14219001 - 14219132
Alignment:
Q  288 tgtatcaattttcaatgagtgagatttgatcaacggctgatatgttaacctcctctaattacaatgatctaacggtttggatagattggagccaaaaaag 387  Q
    ||||||||||||||| || |||||||||||||| |||| || || |||||||| |||||||||||||||||||||| ||||||| |||||||||||||||    
T  14219001 tgtatcaattttcaaggaatgagatttgatcaatggctcatgtgctaacctcccctaattacaatgatctaacggtctggatagtttggagccaaaaaag 14219100  T
Q  388 taggtttaatgttaggaaattagggtaagcat 419  Q
    |||||| |  ||| ||||||||||||||||||    
T  14219101 taggttaagggtttggaaattagggtaagcat 14219132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 265 - 419
Target Start/End: Original strand, 14221869 - 14222021
Alignment:
Q  265 tgttttgtttccctacatgcacgtgtatcaattttcaatgagtgagatttgatcaacggctgatatgttaacctcctctaattacaatgatctaacggtt 364  Q
    |||||||||| ||||  ||| ||||||||||||||||| || |||||||||||||| |||| || || |||||||| ||||||| ||||||||||||||     
T  14221869 tgttttgttttccta--tgcgcgtgtatcaattttcaaggaatgagatttgatcaatggctcatgtgctaacctcccctaattaaaatgatctaacggtc 14221966  T
Q  365 tggatagattggagccaaaaaagtaggtttaatgttaggaaattagggtaagcat 419  Q
    ||||||| ||||||||||||||||||||| |  ||| ||||||||||||||||||    
T  14221967 tggatagtttggagccaaaaaagtaggttaagggtttggaaattagggtaagcat 14222021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 265 - 419
Target Start/End: Original strand, 14222838 - 14222990
Alignment:
Q  265 tgttttgtttccctacatgcacgtgtatcaattttcaatgagtgagatttgatcaacggctgatatgttaacctcctctaattacaatgatctaacggtt 364  Q
    |||||||||| ||||  ||| ||||||||||||||||| || |||||||||||||| |||| || || |||||||| |||||||||||||||||| |||     
T  14222838 tgttttgttttccta--tgcgcgtgtatcaattttcaaggaatgagatttgatcaatggctcatgtgctaacctcccctaattacaatgatctaatggtc 14222935  T
Q  365 tggatagattggagccaaaaaagtaggtttaatgttaggaaattagggtaagcat 419  Q
    ||||||| ||||||||||||||||||||| |  ||| ||||||||||||||||||    
T  14222936 tggatagtttggagccaaaaaagtaggttaagggtttggaaattagggtaagcat 14222990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 165 - 376
Target Start/End: Complemental strand, 41810445 - 41810243
Alignment:
Q  165 taatcaaaatgtgacagaaagagaagaagagggaagcatggggctctgtacagtttgcattggtattgaacaaattaatggagaggtgagatagtaacat 264  Q
    ||||||||| ||||||||  |||||||||||||||||||||||| ||||| ||||||||| ||||||||||||  ||||||||||||| |||| |||||     
T  41810445 taatcaaaa-gtgacagagggagaagaagagggaagcatggggcactgtagagtttgcatgggtattgaacaa--taatggagaggtgtgataataaca- 41810350  T
Q  265 tgttttgtttccctacatgcacgtgtatcaattttcaatgagtgagatttgatcaacggctgatatgttaacctcctctaattacaatgatctaacggtt 364  Q
       |  |||| || ||  || |||||  |||||||||| ||||||||||||||||| || ||||||| ||||| || ||| ||||||||||||||||||     
T  41810349 ---tcagttttccgac--gcgcgtgttacaattttcaaggagtgagatttgatcaatggttgatatgctaaccgcccctacttacaatgatctaacggtc 41810255  T
Q  365 tggatagattgg 376  Q
    ||||| ||||||    
T  41810254 tggattgattgg 41810243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 310 - 391
Target Start/End: Original strand, 1068910 - 1068991
Alignment:
Q  310 gatttgatc-aacggctgatatgttaacctcctctaattacaatgatctaacggtttggatagattggagccaaaaaagtagg 391  Q
    ||||||||| |||||||||| || ||| || | ||||||||||||||||||| ||  ||||| | ||||||||||||||||||    
T  1068910 gatttgatctaacggctgatgtgctaatcttc-ctaattacaatgatctaacagtcaggataaaatggagccaaaaaagtagg 1068991  T

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Target: chr2 (Bit Score: 84; Significance: 1e-39; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 265 - 419
Target Start/End: Original strand, 31409598 - 31409750
Alignment:
Q  265 tgttttgtttccctacatgcacgtgtatcaattttcaatgagtgagatttgatcaacggctgatatgttaacctcctctaattacaatgatctaacggtt 364  Q
    |||||||||| ||||  ||| ||||||||||||||||| || |||||||||||||| |||| || || |||||||| ||||||||||||||||||||||     
T  31409598 tgttttgttttccta--tgcgcgtgtatcaattttcaaggaatgagatttgatcaatggctcatgtgctaacctcccctaattacaatgatctaacggtc 31409695  T
Q  365 tggatagattggagccaaaaaagtaggtttaatgttaggaaattagggtaagcat 419  Q
    ||||||| ||||||||||||||||||||| |  ||| ||||||||||||||||||    
T  31409696 tggatagtttggagccaaaaaagtaggttaagggtttggaaattagggtaagcat 31409750  T

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Target: scaffold0096 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 287 - 391
Target Start/End: Original strand, 32812 - 32916
Alignment:
Q  287 gtgtatcaattttcaatgagtgagatttgatca-acggctgatatgttaacctcctctaattacaatgatctaacggtttggatagattggagccaaaaa 385  Q
    |||| ||| |||| || ||||| |||||||||  ||||||||| || ||| || || ||| |||||||||||||||||  ||||| | ||||||||||||    
T  32812 gtgtttcattttttaaagagtgtgatttgatctgacggctgatgtgctaatcttct-taaatacaatgatctaacggtcaggataaaatggagccaaaaa 32910  T
Q  386 agtagg 391  Q
    ||||||    
T  32911 agtagg 32916  T

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