View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1046_high_5 (Length: 491)
Name: NF1046_high_5
Description: NF1046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1046_high_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 10 - 422
Target Start/End: Original strand, 984781 - 985195
Alignment:
| Q |
10 |
tcataggtaaattaaacttgag--cttgatagagaaaaaactcattagagttcatgttgattatttggtataaaatgtgagttgtgtaaataattttcat |
107 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
984781 |
tcataggtaaattaaacttgagagcttgatagagaaaaaactcattagagttcatgttgattatttggtataagatgtgagttgtgtacataattttcat |
984880 |
T |
|
| Q |
108 |
gtttatagaactcaatttttacatacaaattgagaaactaacttctaactactttcctnnnnnnnttaatttctaaccactaacttactcaatatttctg |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
984881 |
gtttatagaactcaatttttacatacaaattgagaaactaacttctaactactttcctaaaaaaattaatttctaaccactaacttactcaatatttctg |
984980 |
T |
|
| Q |
208 |
gtaacaacaacaatttataaccttagcaaccatagttatttgcatttgtaactactaaagagagtgaaacaactatggaaattagagacaacaaaaacca |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
984981 |
gtaacaacaacaatttataaccttagcaaccatagttatttgcatttgtaactactaaagagagtgaaacaactatggaaattagagacaacaaaaacca |
985080 |
T |
|
| Q |
308 |
atttggtcgccatatttggcatctctatttctttgcgctaattaannnnnnnctagtagcatgcgaactaggatgtagggtgtgtttgatctgttaaaca |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
985081 |
atttggtcgccatatttggcatctctatttctttgcgctaattaatttttttctagtagcatgcgaactaggatgtagggtgtgtttgatttattaaaca |
985180 |
T |
|
| Q |
408 |
gtaagtattagatag |
422 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
985181 |
gtaagtattagatag |
985195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 384 - 416
Target Start/End: Complemental strand, 32468099 - 32468067
Alignment:
| Q |
384 |
agggtgtgtttgatctgttaaacagtaagtatt |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
32468099 |
agggtgtgtttgatctgttaaacagtaagtatt |
32468067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University