View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1046_high_8 (Length: 456)
Name: NF1046_high_8
Description: NF1046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1046_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 10 - 427
Target Start/End: Complemental strand, 5140368 - 5139944
Alignment:
| Q |
10 |
attatacttgagctttgacatggtttagaaggaacattttaatcatgttatagtggaaaatgtaattaaataccaaaattgtcttagatgttgttcaaat |
109 |
Q |
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| T |
5140368 |
attatacttgagctttgacatggtttagaaggaacattttaatcatattatagtggaaaatataattaagtaccaaaattgtcttagatgttgttcaaat |
5140269 |
T |
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| Q |
110 |
atcactannnnnnnnnctttt-ctgatnnnnnnnnnnttaa-taagaatgtgtatgaaaaataaaagttgttgaattgctcnnnnnnnnnnta-----tt |
202 |
Q |
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| T |
5140268 |
atcactatttttttttctttttctgataaaaaaaaaattaaataagaatgtgtatgaaaaataaaagttgttgaattgctcaaaaaaaaaaaaaaaatta |
5140169 |
T |
|
| Q |
203 |
gttgaaatatagttggtaaaaattcaatcttgatgtgagcataaccaaaacacacgcagtataccaaaaccatcaaacttatccctatgacagacacaac |
302 |
Q |
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| T |
5140168 |
gttgaaatatagttggtaaaaattcaatcttgatgtgagcataaccaaaacacacgcagtataccaaaaccatcaaacttatccctatgacagacacaac |
5140069 |
T |
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| Q |
303 |
gaacaaaactgtcgccacgtggcgtaacatccccaatttaaccaccatctccaacgacgccgtttcacccaaccaccttttcaacaactccaccttcact |
402 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5140068 |
gaacaaaactgtcgccacgtggcgtaacatccctaatttaaccaccatctccgacgacgccgtttcacccaaccaccttttcaacaactccaccttcact |
5139969 |
T |
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| Q |
403 |
ttcaccgacgcaaccaccaccattc |
427 |
Q |
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| T |
5139968 |
ttcaccgacgcaaccaccaccattc |
5139944 |
T |
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