View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1046_high_9 (Length: 455)

Name: NF1046_high_9
Description: NF1046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1046_high_9
NF1046_high_9
[»] chr5 (20 HSPs)
chr5 (31-455)||(40111371-40111776)
chr5 (42-82)||(32197847-32197887)
chr5 (42-80)||(32010059-32010097)
chr5 (42-83)||(14331480-14331521)
chr5 (42-78)||(9107204-9107240)
chr5 (42-82)||(34198535-34198575)
chr5 (48-80)||(40335791-40335823)
chr5 (42-80)||(10640067-10640105)
chr5 (53-83)||(12074361-12074391)
chr5 (45-79)||(14932413-14932447)
chr5 (42-80)||(17369317-17369355)
chr5 (42-83)||(32941583-32941625)
chr5 (42-79)||(499650-499687)
chr5 (43-80)||(35299880-35299917)
chr5 (42-79)||(36796626-36796663)
chr5 (42-79)||(39594921-39594958)
chr5 (42-79)||(41419433-41419470)
chr5 (42-79)||(41534552-41534589)
chr5 (43-80)||(42647005-42647042)
chr5 (50-78)||(39105587-39105615)
[»] chr3 (26 HSPs)
chr3 (42-82)||(25447161-25447201)
chr3 (42-77)||(26911705-26911740)
chr3 (41-79)||(26990144-26990182)
chr3 (42-76)||(33405114-33405148)
chr3 (42-83)||(30657400-30657441)
chr3 (46-83)||(36507007-36507044)
chr3 (43-79)||(31615479-31615515)
chr3 (48-79)||(32582857-32582888)
chr3 (52-83)||(47903995-47904026)
chr3 (42-80)||(16072959-16072997)
chr3 (42-84)||(20501982-20502024)
chr3 (42-80)||(29114539-29114577)
chr3 (41-83)||(45432868-45432910)
chr3 (47-80)||(849823-849856)
chr3 (42-79)||(3775770-3775807)
chr3 (42-79)||(20210847-20210884)
chr3 (42-79)||(20874230-20874267)
chr3 (47-84)||(21271079-21271116)
chr3 (42-83)||(41848631-41848672)
chr3 (31-80)||(42747700-42747749)
chr3 (42-83)||(50946201-50946242)
chr3 (51-83)||(2100094-2100126)
chr3 (47-83)||(24887215-24887251)
chr3 (48-80)||(36769881-36769913)
chr3 (47-79)||(43875585-43875617)
chr3 (48-80)||(44014716-44014748)
[»] chr4 (31 HSPs)
chr4 (42-83)||(27043745-27043786)
chr4 (49-83)||(7367969-7368003)
chr4 (42-80)||(22662169-22662207)
chr4 (42-80)||(22666648-22666686)
chr4 (42-80)||(25571373-25571411)
chr4 (42-83)||(26590638-26590679)
chr4 (42-79)||(41336874-41336911)
chr4 (45-82)||(52315113-52315150)
chr4 (46-79)||(52428782-52428815)
chr4 (47-83)||(679410-679446)
chr4 (42-82)||(41433489-41433529)
chr4 (41-81)||(46415708-46415748)
chr4 (48-79)||(3891711-3891742)
chr4 (42-81)||(9720571-9720610)
chr4 (48-83)||(28615454-28615489)
chr4 (49-83)||(7297660-7297694)
chr4 (42-80)||(17822783-17822821)
chr4 (42-80)||(32071977-32072015)
chr4 (42-80)||(42403941-42403979)
chr4 (42-80)||(55437190-55437228)
chr4 (42-83)||(2244165-2244206)
chr4 (42-83)||(18512430-18512471)
chr4 (50-83)||(21953395-21953428)
chr4 (46-83)||(25309310-25309347)
chr4 (42-83)||(37636101-37636142)
chr4 (50-79)||(52169939-52169968)
chr4 (42-79)||(55870261-55870298)
chr4 (51-79)||(12163006-12163034)
chr4 (42-78)||(15173223-15173259)
chr4 (51-79)||(37575855-37575883)
chr4 (47-83)||(53315445-53315481)
[»] chr7 (27 HSPs)
chr7 (42-86)||(28691748-28691792)
chr7 (31-82)||(34036020-34036071)
chr7 (42-80)||(30812252-30812290)
chr7 (42-80)||(44822072-44822110)
chr7 (42-83)||(47046023-47046064)
chr7 (43-83)||(35808865-35808905)
chr7 (49-83)||(7612551-7612585)
chr7 (42-80)||(19302481-19302519)
chr7 (40-82)||(30134244-30134286)
chr7 (42-83)||(529476-529517)
chr7 (42-79)||(1418533-1418570)
chr7 (42-79)||(11619077-11619114)
chr7 (46-79)||(11782962-11782995)
chr7 (42-79)||(19624291-19624328)
chr7 (50-79)||(20526568-20526597)
chr7 (42-79)||(24048654-24048691)
chr7 (42-83)||(24975990-24976031)
chr7 (50-83)||(29287348-29287381)
chr7 (42-79)||(33266405-33266442)
chr7 (46-83)||(37064383-37064420)
chr7 (46-83)||(41040283-41040320)
chr7 (42-79)||(44917445-44917482)
chr7 (51-83)||(28340992-28341024)
chr7 (55-83)||(29281935-29281963)
chr7 (42-78)||(34464141-34464177)
chr7 (53-85)||(47134671-47134703)
chr7 (42-78)||(47941422-47941458)
[»] chr2 (21 HSPs)
chr2 (42-78)||(40059381-40059417)
chr2 (42-78)||(40085281-40085317)
chr2 (42-80)||(1830153-1830191)
chr2 (43-80)||(7103391-7103428)
chr2 (42-83)||(8017548-8017589)
chr2 (42-83)||(18179063-18179104)
chr2 (49-85)||(2142775-2142811)
chr2 (44-80)||(10619138-10619174)
chr2 (43-79)||(23974412-23974448)
chr2 (43-79)||(33197180-33197216)
chr2 (48-79)||(37419586-37419617)
chr2 (42-77)||(42419907-42419942)
chr2 (42-80)||(15370241-15370279)
chr2 (42-80)||(27317493-27317531)
chr2 (42-80)||(41170724-41170762)
chr2 (42-79)||(2416427-2416464)
chr2 (49-82)||(6561458-6561491)
chr2 (42-83)||(7193776-7193817)
chr2 (42-79)||(22878212-22878249)
chr2 (42-79)||(30331865-30331902)
chr2 (42-79)||(40837356-40837393)
[»] chr8 (23 HSPs)
chr8 (48-83)||(10727464-10727499)
chr8 (42-80)||(38602441-38602479)
chr8 (54-87)||(18930821-18930854)
chr8 (42-82)||(40728327-40728367)
chr8 (49-83)||(1892139-1892173)
chr8 (42-80)||(7008712-7008750)
chr8 (42-80)||(14280339-14280377)
chr8 (42-80)||(15180653-15180691)
chr8 (42-80)||(30251372-30251410)
chr8 (49-83)||(40357049-40357083)
chr8 (42-79)||(1096604-1096641)
chr8 (42-83)||(1889050-1889091)
chr8 (42-79)||(2487927-2487964)
chr8 (42-79)||(2606163-2606200)
chr8 (42-79)||(30657696-30657733)
chr8 (42-78)||(4560616-4560652)
chr8 (48-80)||(5349504-5349536)
chr8 (42-78)||(6496811-6496847)
chr8 (42-74)||(6950436-6950468)
chr8 (48-80)||(16162880-16162912)
chr8 (42-82)||(35928646-35928686)
chr8 (47-83)||(38537710-38537746)
chr8 (49-81)||(42893407-42893439)
[»] chr1 (20 HSPs)
chr1 (42-85)||(6292606-6292649)
chr1 (48-82)||(30013995-30014029)
chr1 (48-79)||(172492-172523)
chr1 (42-77)||(17009503-17009538)
chr1 (50-85)||(24417648-24417683)
chr1 (48-79)||(29045852-29045883)
chr1 (42-77)||(30257798-30257833)
chr1 (42-76)||(2522710-2522744)
chr1 (42-80)||(26184857-26184895)
chr1 (43-80)||(24460319-24460356)
chr1 (50-79)||(37617384-37617413)
chr1 (42-79)||(41505788-41505825)
chr1 (42-79)||(50644174-50644211)
chr1 (48-76)||(5894113-5894141)
chr1 (49-77)||(23445454-23445482)
chr1 (42-78)||(24334309-24334345)
chr1 (47-83)||(25719790-25719826)
chr1 (42-82)||(33204310-33204350)
chr1 (43-83)||(33976293-33976333)
chr1 (42-78)||(39976130-39976166)
[»] chr6 (20 HSPs)
chr6 (42-80)||(30536883-30536921)
chr6 (42-79)||(4308891-4308928)
chr6 (42-83)||(7351586-7351627)
chr6 (42-83)||(21405069-21405110)
chr6 (42-81)||(9202902-9202941)
chr6 (42-80)||(7785662-7785700)
chr6 (42-80)||(34404644-34404682)
chr6 (42-79)||(1231218-1231255)
chr6 (42-83)||(3525238-3525279)
chr6 (42-79)||(31594296-31594333)
chr6 (42-83)||(31624374-31624415)
chr6 (46-79)||(31776191-31776224)
chr6 (49-82)||(31811640-31811673)
chr6 (42-79)||(33027706-33027743)
chr6 (42-79)||(33089620-33089657)
chr6 (42-83)||(33737684-33737725)
chr6 (49-81)||(2386575-2386607)
chr6 (51-83)||(29270023-29270055)
chr6 (47-83)||(31623669-31623705)
chr6 (42-82)||(33068518-33068558)
[»] scaffold1252 (1 HSPs)
scaffold1252 (42-82)||(390-430)


Alignment Details
Target: chr5 (Bit Score: 343; Significance: 0; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 31 - 455
Target Start/End: Original strand, 40111371 - 40111776
Alignment:
Q  31 ctcacaatagctatgtcagtagataaactcaaataagtcaatccaaacagaccatttgatggttgttatagtaagaaaatatggatgataattttttata 130  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40111371 ctcacaatagctatgtcagtagataaactcaaataagtcaatcgaaacagaccatttgatggttgttatagtaagaaaatatggatgataattttttata 40111470  T
Q  131 ttttctattttgttgatggatgtataataggtgggattctgaaggcccttttaaaccattgcatgtgatgaatccaacaagacttgcttttgttcggtct 230  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  40111471 ttttctattttgttgatgtatgtataataggtgggattctgaaggcccttttaaaccattgcatgtgatgaatccaacaagacttgctttcgttcggtct 40111570  T
Q  231 gcattgtgtagacatttcaagtaagcaacctcttttatggttctgttttctaatatagtgcttagtttttctaatttattggttatctcttgttgttgtt 330  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  40111571 gcattgtgtagacatttcaagtaagcaacctcttttatgtttctgttttctaatatagttcttagtttttctaatttattggttatctcttgttgttgtt 40111670  T
Q  331 acctctattttgaatctggtagaatgtggtatgatgtttactgtgtataatttcattgttttacttgtggaatttagtaaattatacgacataatctggc 430  Q
    ||||||||||||||||||||||||||||                   |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40111671 acctctattttgaatctggtagaatgtg-------------------taatttcattgttttacttgtggaatttagtaaattatacgacataatctggc 40111751  T
Q  431 tgtgctgggttagaaacttagatac 455  Q
    |||||||||||||||||||||||||    
T  40111752 tgtgctgggttagaaacttagatac 40111776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 42 - 82
Target Start/End: Original strand, 32197847 - 32197887
Alignment:
Q  42 tatgtcagtagataaactcaaataagtcaatccaaacagac 82  Q
    |||||||||||||||||||||| ||||||||||||||||||    
T  32197847 tatgtcagtagataaactcaaaaaagtcaatccaaacagac 32197887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 42 - 80
Target Start/End: Original strand, 32010059 - 32010097
Alignment:
Q  42 tatgtcagtagataaactcaaataagtcaatccaaacag 80  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  32010059 tatgtgagtagataaactcaaataagtcaatccaaacag 32010097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 42 - 83
Target Start/End: Original strand, 14331480 - 14331521
Alignment:
Q  42 tatgtcagtagataaactcaaataagtcaatccaaacagacc 83  Q
    |||| |||||||||| ||||||||||||||||||||||||||    
T  14331480 tatgacagtagataagctcaaataagtcaatccaaacagacc 14331521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 42 - 78
Target Start/End: Original strand, 9107204 - 9107240
Alignment:
Q  42 tatgtcagtagataaactcaaataagtcaatccaaac 78  Q
    ||||||| |||||||||||||||||||||||||||||    
T  9107204 tatgtcactagataaactcaaataagtcaatccaaac 9107240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 42 - 82
Target Start/End: Original strand, 34198535 - 34198575
Alignment:
Q  42 tatgtcagtagataaactcaaataagtcaatccaaacagac 82  Q
    ||||| |||| ||||||||||||||||||||||||||||||    
T  34198535 tatgttagtaaataaactcaaataagtcaatccaaacagac 34198575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 48 - 80
Target Start/End: Complemental strand, 40335823 - 40335791
Alignment:
Q  48 agtagataaactcaaataagtcaatccaaacag 80  Q
    |||||||||||||||||||||||||||||||||    
T  40335823 agtagataaactcaaataagtcaatccaaacag 40335791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 42 - 80
Target Start/End: Original strand, 10640067 - 10640105
Alignment:
Q  42 tatgtcagtagataaactcaaataagtcaatccaaacag 80  Q
    ||||||||||||||||||||||||||  |||||||||||    
T  10640067 tatgtcagtagataaactcaaataagctaatccaaacag 10640105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 53 - 83
Target Start/End: Complemental strand, 12074391 - 12074361
Alignment:
Q  53 ataaactcaaataagtcaatccaaacagacc 83  Q
    |||||||||||||||||||||||||||||||    
T  12074391 ataaactcaaataagtcaatccaaacagacc 12074361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 45 - 79
Target Start/End: Original strand, 14932413 - 14932447
Alignment:
Q  45 gtcagtagataaactcaaataagtcaatccaaaca 79  Q
    |||||||||||| ||||||||||||||||||||||    
T  14932413 gtcagtagataagctcaaataagtcaatccaaaca 14932447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 42 - 80
Target Start/End: Original strand, 17369317 - 17369355
Alignment:
Q  42 tatgtcagtagataaactcaaataagtcaatccaaacag 80  Q
    |||||||||||||||  ||||||||||||||||||||||    
T  17369317 tatgtcagtagataagttcaaataagtcaatccaaacag 17369355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 42 - 83
Target Start/End: Original strand, 32941583 - 32941625
Alignment:
Q  42 tatgtcagtagataaa-ctcaaataagtcaatccaaacagacc 83  Q
    |||||||||||||||| ||| ||||||||||||||||||||||    
T  32941583 tatgtcagtagataaagctctaataagtcaatccaaacagacc 32941625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 79
Target Start/End: Complemental strand, 499687 - 499650
Alignment:
Q  42 tatgtcagtagataaactcaaataagtcaatccaaaca 79  Q
    ||||||||||| ||| ||||||||||||||||||||||    
T  499687 tatgtcagtaggtaagctcaaataagtcaatccaaaca 499650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 80
Target Start/End: Original strand, 35299880 - 35299917
Alignment:
Q  43 atgtcagtagataaactcaaataagtcaatccaaacag 80  Q
    |||||| ||||||| |||||||||||||||||||||||    
T  35299880 atgtcaatagataagctcaaataagtcaatccaaacag 35299917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 79
Target Start/End: Complemental strand, 36796663 - 36796626
Alignment:
Q  42 tatgtcagtagataaactcaaataagtcaatccaaaca 79  Q
    ||||||| ||||||| ||||||||||||||||||||||    
T  36796663 tatgtcattagataagctcaaataagtcaatccaaaca 36796626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 79
Target Start/End: Original strand, 39594921 - 39594958
Alignment:
Q  42 tatgtcagtagataaactcaaataagtcaatccaaaca 79  Q
    |||||| |||||||| ||||||||||||||||||||||    
T  39594921 tatgtcggtagataagctcaaataagtcaatccaaaca 39594958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 79
Target Start/End: Original strand, 41419433 - 41419470
Alignment:
Q  42 tatgtcagtagataaactcaaataagtcaatccaaaca 79  Q
    ||||||||||||| | ||||||||||||||||||||||    
T  41419433 tatgtcagtagattagctcaaataagtcaatccaaaca 41419470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 79
Target Start/End: Original strand, 41534552 - 41534589
Alignment:
Q  42 tatgtcagtagataaactcaaataagtcaatccaaaca 79  Q
    ||||||||||||| | ||||||||||||||||||||||    
T  41534552 tatgtcagtagattagctcaaataagtcaatccaaaca 41534589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 80
Target Start/End: Original strand, 42647005 - 42647042
Alignment:
Q  43 atgtcagtagataaactcaaataagtcaatccaaacag 80  Q
    |||||||||||||| |||||||||| ||||||||||||    
T  42647005 atgtcagtagataagctcaaataagccaatccaaacag 42647042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 50 - 78
Target Start/End: Original strand, 39105587 - 39105615
Alignment:
Q  50 tagataaactcaaataagtcaatccaaac 78  Q
    |||||||||||||||||||||||||||||    
T  39105587 tagataaactcaaataagtcaatccaaac 39105615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 42 - 82
Target Start/End: Complemental strand, 25447201 - 25447161
Alignment:
Q  42 tatgtcagtagataaactcaaataagtcaatccaaacagac 82  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  25447201 tatgtcagtagataaactcaaataagtcaatccaaacagac 25447161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 42 - 77
Target Start/End: Original strand, 26911705 - 26911740
Alignment:
Q  42 tatgtcagtagataaactcaaataagtcaatccaaa 77  Q
    ||||||||||||||||||||||||||||||||||||    
T  26911705 tatgtcagtagataaactcaaataagtcaatccaaa 26911740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 41 - 79
Target Start/End: Complemental strand, 26990182 - 26990144
Alignment:
Q  41 ctatgtcagtagataaactcaaataagtcaatccaaaca 79  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  26990182 ctatgtcagtagataagctcaaataagtcaatccaaaca 26990144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 42 - 76
Target Start/End: Complemental strand, 33405148 - 33405114
Alignment:
Q  42 tatgtcagtagataaactcaaataagtcaatccaa 76  Q
    |||||||||||||||||||||||||||||||||||    
T  33405148 tatgtcagtagataaactcaaataagtcaatccaa 33405114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 42 - 83
Target Start/End: Original strand, 30657400 - 30657441
Alignment:
Q  42 tatgtcagtagataaactcaaataagtcaatccaaacagacc 83  Q
    ||||||||||||||||||||||||| ||||| ||||||||||    
T  30657400 tatgtcagtagataaactcaaataaatcaattcaaacagacc 30657441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 46 - 83
Target Start/End: Complemental strand, 36507044 - 36507007
Alignment:
Q  46 tcagtagataaactcaaataagtcaatccaaacagacc 83  Q
    |||||||||||||||||||||| |||||||||||||||    
T  36507044 tcagtagataaactcaaataagccaatccaaacagacc 36507007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 43 - 79
Target Start/End: Complemental strand, 31615515 - 31615479
Alignment:
Q  43 atgtcagtagataaactcaaataagtcaatccaaaca 79  Q
    ||||| |||||||||||||||||||||||||||||||    
T  31615515 atgtccgtagataaactcaaataagtcaatccaaaca 31615479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 48 - 79
Target Start/End: Original strand, 32582857 - 32582888
Alignment:
Q  48 agtagataaactcaaataagtcaatccaaaca 79  Q
    ||||||||||||||||||||||||||||||||    
T  32582857 agtagataaactcaaataagtcaatccaaaca 32582888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 52 - 83
Target Start/End: Complemental strand, 47904026 - 47903995
Alignment:
Q  52 gataaactcaaataagtcaatccaaacagacc 83  Q
    ||||||||||||||||||||||||||||||||    
T  47904026 gataaactcaaataagtcaatccaaacagacc 47903995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 42 - 80
Target Start/End: Complemental strand, 16072997 - 16072959
Alignment:
Q  42 tatgtcagtagataaactcaaataagtcaatccaaacag 80  Q
    ||||||| ||||||| |||||||||||||||||||||||    
T  16072997 tatgtcattagataagctcaaataagtcaatccaaacag 16072959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 42 - 84
Target Start/End: Complemental strand, 20502024 - 20501982
Alignment:
Q  42 tatgtcagtagataaactcaaataagtcaatccaaacagacca 84  Q
    |||| ||| ||||||||| ||||||||||||||||||||||||    
T  20502024 tatgccaggagataaactgaaataagtcaatccaaacagacca 20501982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 42 - 80
Target Start/End: Original strand, 29114539 - 29114577
Alignment:
Q  42 tatgtcagtagataaactcaaataagtcaatccaaacag 80  Q
    |||||||||||||||| ||||||||||||||| ||||||    
T  29114539 tatgtcagtagataaagtcaaataagtcaatcgaaacag 29114577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 41 - 83
Target Start/End: Complemental strand, 45432910 - 45432868
Alignment:
Q  41 ctatgtcagtagataaactcaaataagtcaatccaaacagacc 83  Q
    ||||||||||||||||  | |||||||||||||||||||||||    
T  45432910 ctatgtcagtagataagttaaaataagtcaatccaaacagacc 45432868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 80
Target Start/End: Original strand, 849823 - 849856
Alignment:
Q  47 cagtagataaactcaaataagtcaatccaaacag 80  Q
    ||||||||||| ||||||||||||||||||||||    
T  849823 cagtagataaattcaaataagtcaatccaaacag 849856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 79
Target Start/End: Complemental strand, 3775807 - 3775770
Alignment:
Q  42 tatgtcagtagataaactcaaataagtcaatccaaaca 79  Q
    |||| ||||||||||||||||||||| |||||||||||    
T  3775807 tatgccagtagataaactcaaataaggcaatccaaaca 3775770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 79
Target Start/End: Complemental strand, 20210884 - 20210847
Alignment:
Q  42 tatgtcagtagataaactcaaataagtcaatccaaaca 79  Q
    ||||||||||||||| ||||||||| ||||||||||||    
T  20210884 tatgtcagtagataacctcaaataaatcaatccaaaca 20210847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 79
Target Start/End: Complemental strand, 20874267 - 20874230
Alignment:
Q  42 tatgtcagtagataaactcaaataagtcaatccaaaca 79  Q
    ||||||| || |||||||||||||||||||||||||||    
T  20874267 tatgtcattatataaactcaaataagtcaatccaaaca 20874230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 84
Target Start/End: Original strand, 21271079 - 21271116
Alignment:
Q  47 cagtagataaactcaaataagtcaatccaaacagacca 84  Q
    ||||| ||||||||||||||||||| ||||||||||||    
T  21271079 cagtatataaactcaaataagtcaacccaaacagacca 21271116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 83
Target Start/End: Complemental strand, 41848672 - 41848631
Alignment:
Q  42 tatgtcagtagataaactcaaataagtcaatccaaacagacc 83  Q
    ||||| |||||||||||||||||||||||||| ||| |||||    
T  41848672 tatgttagtagataaactcaaataagtcaatctaaatagacc 41848631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 80
Target Start/End: Complemental strand, 42747749 - 42747700
Alignment:
Q  31 ctcacaatagctatgtcagtagataaactcaaataagtcaatccaaacag 80  Q
    |||||||||  ||||  |||||||||||||||||||||||| ||||||||    
T  42747749 ctcacaatacttatggaagtagataaactcaaataagtcaaaccaaacag 42747700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 83
Target Start/End: Complemental strand, 50946242 - 50946201
Alignment:
Q  42 tatgtcagtagataaactcaaataagtcaatccaaacagacc 83  Q
    ||||| || |||||||||||||||||||| ||||||||||||    
T  50946242 tatgttaggagataaactcaaataagtcattccaaacagacc 50946201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 51 - 83
Target Start/End: Complemental strand, 2100126 - 2100094
Alignment:
Q  51 agataaactcaaataagtcaatccaaacagacc 83  Q
    |||||| ||||||||||||||||||||||||||    
T  2100126 agataagctcaaataagtcaatccaaacagacc 2100094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 47 - 83
Target Start/End: Complemental strand, 24887251 - 24887215
Alignment:
Q  47 cagtagataaactcaaataagtcaatccaaacagacc 83  Q
    |||||||||||||||||| ||| ||||||||||||||    
T  24887251 cagtagataaactcaaatcagtaaatccaaacagacc 24887215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 48 - 80
Target Start/End: Complemental strand, 36769913 - 36769881
Alignment:
Q  48 agtagataaactcaaataagtcaatccaaacag 80  Q
    |||||||||| ||||||||||||||||||||||    
T  36769913 agtagataaaatcaaataagtcaatccaaacag 36769881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 47 - 79
Target Start/End: Original strand, 43875585 - 43875617
Alignment:
Q  47 cagtagataaactcaaataagtcaatccaaaca 79  Q
    |||||||||||||||||||||||||| ||||||    
T  43875585 cagtagataaactcaaataagtcaattcaaaca 43875617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 48 - 80
Target Start/End: Complemental strand, 44014748 - 44014716
Alignment:
Q  48 agtagataaactcaaataagtcaatccaaacag 80  Q
    |||||||||||||||||||| ||||||||||||    
T  44014748 agtagataaactcaaataagccaatccaaacag 44014716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 42 - 83
Target Start/End: Complemental strand, 27043786 - 27043745
Alignment:
Q  42 tatgtcagtagataaactcaaataagtcaatccaaacagacc 83  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  27043786 tatgtcagtagataagctcaaataagtcaatccaaacagacc 27043745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 49 - 83
Target Start/End: Complemental strand, 7368003 - 7367969
Alignment:
Q  49 gtagataaactcaaataagtcaatccaaacagacc 83  Q
    |||||||||||||||||||||||||||||||||||    
T  7368003 gtagataaactcaaataagtcaatccaaacagacc 7367969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 42 - 80
Target Start/End: Complemental strand, 22662207 - 22662169
Alignment:
Q  42 tatgtcagtagataaactcaaataagtcaatccaaacag 80  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  22662207 tatgttagtagataaactcaaataagtcaatccaaacag 22662169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 42 - 80
Target Start/End: Complemental strand, 22666686 - 22666648
Alignment:
Q  42 tatgtcagtagataaactcaaataagtcaatccaaacag 80  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  22666686 tatgttagtagataaactcaaataagtcaatccaaacag 22666648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 42 - 80
Target Start/End: Original strand, 25571373 - 25571411
Alignment:
Q  42 tatgtcagtagataaactcaaataagtcaatccaaacag 80  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  25571373 tatgtcagtagataaactcaaataagccaatccaaacag 25571411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 42 - 83
Target Start/End: Original strand, 26590638 - 26590679
Alignment:
Q  42 tatgtcagtagataaactcaaataagtcaatccaaacagacc 83  Q
    ||||| ||||||||||||||||||| ||||||||||||||||    
T  26590638 tatgtaagtagataaactcaaataattcaatccaaacagacc 26590679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 42 - 79
Target Start/End: Original strand, 41336874 - 41336911
Alignment:
Q  42 tatgtcagtagataaactcaaataagtcaatccaaaca 79  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  41336874 tatgtgagtagataaactcaaataagtcaatccaaaca 41336911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 45 - 82
Target Start/End: Complemental strand, 52315150 - 52315113
Alignment:
Q  45 gtcagtagataaactcaaataagtcaatccaaacagac 82  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  52315150 gtcagtagataaactcaaataagtcaatccaaagagac 52315113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 46 - 79
Target Start/End: Original strand, 52428782 - 52428815
Alignment:
Q  46 tcagtagataaactcaaataagtcaatccaaaca 79  Q
    ||||||||||||||||||||||||||||||||||    
T  52428782 tcagtagataaactcaaataagtcaatccaaaca 52428815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 47 - 83
Target Start/End: Original strand, 679410 - 679446
Alignment:
Q  47 cagtagataaactcaaataagtcaatccaaacagacc 83  Q
    |||||||||||||||||||||||||| ||||||||||    
T  679410 cagtagataaactcaaataagtcaattcaaacagacc 679446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 42 - 82
Target Start/End: Original strand, 41433489 - 41433529
Alignment:
Q  42 tatgtcagtagataaactcaaataagtcaatccaaacagac 82  Q
    |||||||| |||||||||||||||||||||| |||||||||    
T  41433489 tatgtcaggagataaactcaaataagtcaattcaaacagac 41433529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 41 - 81
Target Start/End: Complemental strand, 46415748 - 46415708
Alignment:
Q  41 ctatgtcagtagataaactcaaataagtcaatccaaacaga 81  Q
    |||||||||| ||| ||||||||||||||||||||||||||    
T  46415748 ctatgtcagtggatgaactcaaataagtcaatccaaacaga 46415708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 48 - 79
Target Start/End: Original strand, 3891711 - 3891742
Alignment:
Q  48 agtagataaactcaaataagtcaatccaaaca 79  Q
    ||||||||||||||||||||||||||||||||    
T  3891711 agtagataaactcaaataagtcaatccaaaca 3891742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 42 - 81
Target Start/End: Complemental strand, 9720610 - 9720571
Alignment:
Q  42 tatgtcagtagataaactcaaataagtcaatccaaacaga 81  Q
    ||||| ||||||||||||||||||||||||||| ||||||    
T  9720610 tatgttagtagataaactcaaataagtcaatcccaacaga 9720571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 48 - 83
Target Start/End: Original strand, 28615454 - 28615489
Alignment:
Q  48 agtagataaactcaaataagtcaatccaaacagacc 83  Q
    |||||||||||| |||||||||||||||||||||||    
T  28615454 agtagataaacttaaataagtcaatccaaacagacc 28615489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 49 - 83
Target Start/End: Original strand, 7297660 - 7297694
Alignment:
Q  49 gtagataaactcaaataagtcaatccaaacagacc 83  Q
    |||||||||||||||||| ||||||||||||||||    
T  7297660 gtagataaactcaaataaatcaatccaaacagacc 7297694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 42 - 80
Target Start/End: Complemental strand, 17822821 - 17822783
Alignment:
Q  42 tatgtcagtagataaactcaaataagtcaatccaaacag 80  Q
    ||||||||||||||| ||||||||||| |||||||||||    
T  17822821 tatgtcagtagataagctcaaataagttaatccaaacag 17822783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 42 - 80
Target Start/End: Original strand, 32071977 - 32072015
Alignment:
Q  42 tatgtcagtagataaactcaaataagtcaatccaaacag 80  Q
    ||||||| ||||||||||||||||||||| |||||||||    
T  32071977 tatgtcaatagataaactcaaataagtcagtccaaacag 32072015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 42 - 80
Target Start/End: Complemental strand, 42403979 - 42403941
Alignment:
Q  42 tatgtcagtagataaactcaaataagtcaatccaaacag 80  Q
    ||||||||| ||||| |||||||||||||||||||||||    
T  42403979 tatgtcagttgataagctcaaataagtcaatccaaacag 42403941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 42 - 80
Target Start/End: Original strand, 55437190 - 55437228
Alignment:
Q  42 tatgtcagtagataaactcaaataagtcaatccaaacag 80  Q
    |||| ||||||||||||||||||||| ||||||||||||    
T  55437190 tatggcagtagataaactcaaataagccaatccaaacag 55437228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 83
Target Start/End: Original strand, 2244165 - 2244206
Alignment:
Q  42 tatgtcagtagataaactcaaataagtcaatccaaacagacc 83  Q
    |||||||||||||||||||  |||| ||||||||||||||||    
T  2244165 tatgtcagtagataaactcggataaatcaatccaaacagacc 2244206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 83
Target Start/End: Complemental strand, 18512471 - 18512430
Alignment:
Q  42 tatgtcagtagataaactcaaataagtcaatccaaacagacc 83  Q
    ||||||||||||||| ||||||||||| |||| |||||||||    
T  18512471 tatgtcagtagataagctcaaataagttaatcgaaacagacc 18512430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 83
Target Start/End: Original strand, 21953395 - 21953428
Alignment:
Q  50 tagataaactcaaataagtcaatccaaacagacc 83  Q
    ||||||| ||||||||||||||||||||||||||    
T  21953395 tagataagctcaaataagtcaatccaaacagacc 21953428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 46 - 83
Target Start/End: Original strand, 25309310 - 25309347
Alignment:
Q  46 tcagtagataaactcaaataagtcaatccaaacagacc 83  Q
    |||||||||||  |||||||||||||||||||||||||    
T  25309310 tcagtagataagttcaaataagtcaatccaaacagacc 25309347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 83
Target Start/End: Complemental strand, 37636142 - 37636101
Alignment:
Q  42 tatgtcagtagataaactcaaataagtcaatccaaacagacc 83  Q
    ||||| ||||||||||||||||||| |||||||||| |||||    
T  37636142 tatgttagtagataaactcaaataaatcaatccaaatagacc 37636101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 79
Target Start/End: Complemental strand, 52169968 - 52169939
Alignment:
Q  50 tagataaactcaaataagtcaatccaaaca 79  Q
    ||||||||||||||||||||||||||||||    
T  52169968 tagataaactcaaataagtcaatccaaaca 52169939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 79
Target Start/End: Complemental strand, 55870298 - 55870261
Alignment:
Q  42 tatgtcagtagataaactcaaataagtcaatccaaaca 79  Q
    ||||||| ||||||||||||||||||| ||||||||||    
T  55870298 tatgtcattagataaactcaaataagttaatccaaaca 55870261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 51 - 79
Target Start/End: Original strand, 12163006 - 12163034
Alignment:
Q  51 agataaactcaaataagtcaatccaaaca 79  Q
    |||||||||||||||||||||||||||||    
T  12163006 agataaactcaaataagtcaatccaaaca 12163034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 42 - 78
Target Start/End: Complemental strand, 15173259 - 15173223
Alignment:
Q  42 tatgtcagtagataaactcaaataagtcaatccaaac 78  Q
    |||||||||||||||  ||||||||||||||||||||    
T  15173259 tatgtcagtagataagttcaaataagtcaatccaaac 15173223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 51 - 79
Target Start/End: Complemental strand, 37575883 - 37575855
Alignment:
Q  51 agataaactcaaataagtcaatccaaaca 79  Q
    |||||||||||||||||||||||||||||    
T  37575883 agataaactcaaataagtcaatccaaaca 37575855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 47 - 83
Target Start/End: Original strand, 53315445 - 53315481
Alignment:
Q  47 cagtagataaactcaaataagtcaatccaaacagacc 83  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  53315445 cagtggataagctcaaataagtcaatccaaacagacc 53315481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 42 - 86
Target Start/End: Complemental strand, 28691792 - 28691748
Alignment:
Q  42 tatgtcagtagataaactcaaataagtcaatccaaacagaccatt 86  Q
    ||||| || ||||||||||||||||||||||||||||||||||||    
T  28691792 tatgttagcagataaactcaaataagtcaatccaaacagaccatt 28691748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 31 - 82
Target Start/End: Original strand, 34036020 - 34036071
Alignment:
Q  31 ctcacaatagctatgtcagtagataaactcaaataagtcaatccaaacagac 82  Q
    |||||||||  ||||||||||||||| ||||||||||||||| |||||||||    
T  34036020 ctcacaatacatatgtcagtagataagctcaaataagtcaattcaaacagac 34036071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 42 - 80
Target Start/End: Original strand, 30812252 - 30812290
Alignment:
Q  42 tatgtcagtagataaactcaaataagtcaatccaaacag 80  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  30812252 tatgtcagtaggtaaactcaaataagtcaatccaaacag 30812290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 42 - 80
Target Start/End: Original strand, 44822072 - 44822110
Alignment:
Q  42 tatgtcagtagataaactcaaataagtcaatccaaacag 80  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  44822072 tatgtcagcagataaactcaaataagtcaatccaaacag 44822110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 42 - 83
Target Start/End: Complemental strand, 47046064 - 47046023
Alignment:
Q  42 tatgtcagtagataaactcaaataagtcaatccaaacagacc 83  Q
    ||||||||||||||| | ||||||||||||||||||||||||    
T  47046064 tatgtcagtagataagcacaaataagtcaatccaaacagacc 47046023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 43 - 83
Target Start/End: Complemental strand, 35808905 - 35808865
Alignment:
Q  43 atgtcagtagataaactcaaataagtcaatccaaacagacc 83  Q
    ||||||||||||||||| |||| ||||||||||||||||||    
T  35808905 atgtcagtagataaactgaaattagtcaatccaaacagacc 35808865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 49 - 83
Target Start/End: Original strand, 7612551 - 7612585
Alignment:
Q  49 gtagataaactcaaataagtcaatccaaacagacc 83  Q
    ||||||||||||||||||||||||||||| |||||    
T  7612551 gtagataaactcaaataagtcaatccaaatagacc 7612585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 42 - 80
Target Start/End: Complemental strand, 19302519 - 19302481
Alignment:
Q  42 tatgtcagtagataaactcaaataagtcaatccaaacag 80  Q
    ||||||||||||||| ||||||||||||||| |||||||    
T  19302519 tatgtcagtagataagctcaaataagtcaattcaaacag 19302481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 40 - 82
Target Start/End: Original strand, 30134244 - 30134286
Alignment:
Q  40 gctatgtcagtagataaactcaaataagtcaatccaaacagac 82  Q
    ||||||||||||||||| ||||||||||| ||| |||||||||    
T  30134244 gctatgtcagtagataagctcaaataagttaattcaaacagac 30134286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 83
Target Start/End: Original strand, 529476 - 529517
Alignment:
Q  42 tatgtcagtagataaactcaaataagtcaatccaaacagacc 83  Q
    |||| |||||||||| ||||||||||||||||||| ||||||    
T  529476 tatgccagtagataagctcaaataagtcaatccaatcagacc 529517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 79
Target Start/End: Original strand, 1418533 - 1418570
Alignment:
Q  42 tatgtcagtagataaactcaaataagtcaatccaaaca 79  Q
    |||| |||||||||| ||||||||||||||||||||||    
T  1418533 tatgccagtagataagctcaaataagtcaatccaaaca 1418570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 79
Target Start/End: Complemental strand, 11619114 - 11619077
Alignment:
Q  42 tatgtcagtagataaactcaaataagtcaatccaaaca 79  Q
    ||||||||||||||| |||||||||| |||||||||||    
T  11619114 tatgtcagtagataagctcaaataagccaatccaaaca 11619077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 46 - 79
Target Start/End: Complemental strand, 11782995 - 11782962
Alignment:
Q  46 tcagtagataaactcaaataagtcaatccaaaca 79  Q
    ||||||||||| ||||||||||||||||||||||    
T  11782995 tcagtagataatctcaaataagtcaatccaaaca 11782962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 79
Target Start/End: Original strand, 19624291 - 19624328
Alignment:
Q  42 tatgtcagtagataaactcaaataagtcaatccaaaca 79  Q
    ||||||| |||||||||||||||||||||| |||||||    
T  19624291 tatgtcaatagataaactcaaataagtcaagccaaaca 19624328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 79
Target Start/End: Original strand, 20526568 - 20526597
Alignment:
Q  50 tagataaactcaaataagtcaatccaaaca 79  Q
    ||||||||||||||||||||||||||||||    
T  20526568 tagataaactcaaataagtcaatccaaaca 20526597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 79
Target Start/End: Original strand, 24048654 - 24048691
Alignment:
Q  42 tatgtcagtagataaactcaaataagtcaatccaaaca 79  Q
    ||||||||||||||||||||||||||| ||| ||||||    
T  24048654 tatgtcagtagataaactcaaataagtaaattcaaaca 24048691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 83
Target Start/End: Original strand, 24975990 - 24976031
Alignment:
Q  42 tatgtcagtagataaactcaaataagtcaatccaaacagacc 83  Q
    ||||| ||||||||| ||||||| ||||||||||||||||||    
T  24975990 tatgttagtagataagctcaaattagtcaatccaaacagacc 24976031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 83
Target Start/End: Original strand, 29287348 - 29287381
Alignment:
Q  50 tagataaactcaaataagtcaatccaaacagacc 83  Q
    ||||||||||||||| ||||||||||||||||||    
T  29287348 tagataaactcaaattagtcaatccaaacagacc 29287381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 79
Target Start/End: Complemental strand, 33266442 - 33266405
Alignment:
Q  42 tatgtcagtagataaactcaaataagtcaatccaaaca 79  Q
    |||||| |||||||| ||||||||||||||||||||||    
T  33266442 tatgtcggtagataagctcaaataagtcaatccaaaca 33266405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 46 - 83
Target Start/End: Complemental strand, 37064420 - 37064383
Alignment:
Q  46 tcagtagataaactcaaataagtcaatccaaacagacc 83  Q
    |||||||||||  |||||||||||||||||||||||||    
T  37064420 tcagtagataagatcaaataagtcaatccaaacagacc 37064383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 46 - 83
Target Start/End: Original strand, 41040283 - 41040320
Alignment:
Q  46 tcagtagataaactcaaataagtcaatccaaacagacc 83  Q
    ||||||||||||||||||||| ||||| ||||||||||    
T  41040283 tcagtagataaactcaaataaatcaattcaaacagacc 41040320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 79
Target Start/End: Complemental strand, 44917482 - 44917445
Alignment:
Q  42 tatgtcagtagataaactcaaataagtcaatccaaaca 79  Q
    |||||| | |||||||||||||||||||||||||||||    
T  44917482 tatgtcgggagataaactcaaataagtcaatccaaaca 44917445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 51 - 83
Target Start/End: Complemental strand, 28341024 - 28340992
Alignment:
Q  51 agataaactcaaataagtcaatccaaacagacc 83  Q
    |||||| ||||||||||||||||||||||||||    
T  28341024 agataagctcaaataagtcaatccaaacagacc 28340992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 55 - 83
Target Start/End: Original strand, 29281935 - 29281963
Alignment:
Q  55 aaactcaaataagtcaatccaaacagacc 83  Q
    |||||||||||||||||||||||||||||    
T  29281935 aaactcaaataagtcaatccaaacagacc 29281963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 42 - 78
Target Start/End: Complemental strand, 34464177 - 34464141
Alignment:
Q  42 tatgtcagtagataaactcaaataagtcaatccaaac 78  Q
    ||||||| ||||||||||||||||| |||||||||||    
T  34464177 tatgtcaatagataaactcaaataaatcaatccaaac 34464141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 53 - 85
Target Start/End: Complemental strand, 47134703 - 47134671
Alignment:
Q  53 ataaactcaaataagtcaatccaaacagaccat 85  Q
    |||||||||||||||||||||||||||| ||||    
T  47134703 ataaactcaaataagtcaatccaaacaggccat 47134671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 42 - 78
Target Start/End: Original strand, 47941422 - 47941458
Alignment:
Q  42 tatgtcagtagataaactcaaataagtcaatccaaac 78  Q
    |||||||||||||||||||||||||  ||||||||||    
T  47941422 tatgtcagtagataaactcaaataaaccaatccaaac 47941458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 42 - 78
Target Start/End: Complemental strand, 40059417 - 40059381
Alignment:
Q  42 tatgtcagtagataaactcaaataagtcaatccaaac 78  Q
    |||||||||||||||||||||||||||||||||||||    
T  40059417 tatgtcagtagataaactcaaataagtcaatccaaac 40059381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 42 - 78
Target Start/End: Complemental strand, 40085317 - 40085281
Alignment:
Q  42 tatgtcagtagataaactcaaataagtcaatccaaac 78  Q
    |||||||||||||||||||||||||||||||||||||    
T  40085317 tatgtcagtagataaactcaaataagtcaatccaaac 40085281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 42 - 80
Target Start/End: Original strand, 1830153 - 1830191
Alignment:
Q  42 tatgtcagtagataaactcaaataagtcaatccaaacag 80  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  1830153 tatgtcagtaaataaactcaaataagtcaatccaaacag 1830191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 43 - 80
Target Start/End: Complemental strand, 7103428 - 7103391
Alignment:
Q  43 atgtcagtagataaactcaaataagtcaatccaaacag 80  Q
    |||||| |||||||||||||||||||||||||||||||    
T  7103428 atgtcaatagataaactcaaataagtcaatccaaacag 7103391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 42 - 83
Target Start/End: Original strand, 8017548 - 8017589
Alignment:
Q  42 tatgtcagtagataaactcaaataagtcaatccaaacagacc 83  Q
    ||||||| ||||||| ||||||||||||||||||||||||||    
T  8017548 tatgtcaatagataacctcaaataagtcaatccaaacagacc 8017589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 42 - 83
Target Start/End: Original strand, 18179063 - 18179104
Alignment:
Q  42 tatgtcagtagataaactcaaataagtcaatccaaacagacc 83  Q
    ||||| ||||||||| ||||||||||||||||||||||||||    
T  18179063 tatgttagtagataagctcaaataagtcaatccaaacagacc 18179104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 49 - 85
Target Start/End: Original strand, 2142775 - 2142811
Alignment:
Q  49 gtagataaactcaaataagtcaatccaaacagaccat 85  Q
    ||||||||||||||||||||||| |||||||||||||    
T  2142775 gtagataaactcaaataagtcaaaccaaacagaccat 2142811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 44 - 80
Target Start/End: Complemental strand, 10619174 - 10619138
Alignment:
Q  44 tgtcagtagataaactcaaataagtcaatccaaacag 80  Q
    ||||||||||||||||||||| |||||||||||||||    
T  10619174 tgtcagtagataaactcaaatgagtcaatccaaacag 10619138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 43 - 79
Target Start/End: Complemental strand, 23974448 - 23974412
Alignment:
Q  43 atgtcagtagataaactcaaataagtcaatccaaaca 79  Q
    |||||||||||||||| ||||||||||||||||||||    
T  23974448 atgtcagtagataaacccaaataagtcaatccaaaca 23974412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 43 - 79
Target Start/End: Complemental strand, 33197216 - 33197180
Alignment:
Q  43 atgtcagtagataaactcaaataagtcaatccaaaca 79  Q
    |||||||| ||||||||||||||||||||||||||||    
T  33197216 atgtcagttgataaactcaaataagtcaatccaaaca 33197180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 48 - 79
Target Start/End: Complemental strand, 37419617 - 37419586
Alignment:
Q  48 agtagataaactcaaataagtcaatccaaaca 79  Q
    ||||||||||||||||||||||||||||||||    
T  37419617 agtagataaactcaaataagtcaatccaaaca 37419586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 42 - 77
Target Start/End: Original strand, 42419907 - 42419942
Alignment:
Q  42 tatgtcagtagataaactcaaataagtcaatccaaa 77  Q
    |||||||| |||||||||||||||||||||||||||    
T  42419907 tatgtcagaagataaactcaaataagtcaatccaaa 42419942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 42 - 80
Target Start/End: Complemental strand, 15370279 - 15370241
Alignment:
Q  42 tatgtcagtagataaactcaaataagtcaatccaaacag 80  Q
    |||| |||||||||| |||||||||||||||||||||||    
T  15370279 tatgccagtagataagctcaaataagtcaatccaaacag 15370241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 42 - 80
Target Start/End: Original strand, 27317493 - 27317531
Alignment:
Q  42 tatgtcagtagataaactcaaataagtcaatccaaacag 80  Q
    |||||| |||||||| |||||||||||||||||||||||    
T  27317493 tatgtcggtagataagctcaaataagtcaatccaaacag 27317531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 42 - 80
Target Start/End: Original strand, 41170724 - 41170762
Alignment:
Q  42 tatgtcagtagataaactcaaataagtcaatccaaacag 80  Q
    ||||| |||||||||||||||||||| ||||||||||||    
T  41170724 tatgttagtagataaactcaaataagccaatccaaacag 41170762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 79
Target Start/End: Original strand, 2416427 - 2416464
Alignment:
Q  42 tatgtcagtagataaactcaaataagtcaatccaaaca 79  Q
    ||||| |||||||||||||||||||||||||| |||||    
T  2416427 tatgttagtagataaactcaaataagtcaatctaaaca 2416464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 49 - 82
Target Start/End: Original strand, 6561458 - 6561491
Alignment:
Q  49 gtagataaactcaaataagtcaatccaaacagac 82  Q
    |||||||||||||||||||||||| |||||||||    
T  6561458 gtagataaactcaaataagtcaattcaaacagac 6561491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 83
Target Start/End: Complemental strand, 7193817 - 7193776
Alignment:
Q  42 tatgtcagtagataaactcaaataagtcaatccaaacagacc 83  Q
    ||||||||||||| || ||| |||||||||||||||||||||    
T  7193817 tatgtcagtagatgaattcagataagtcaatccaaacagacc 7193776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 79
Target Start/End: Original strand, 22878212 - 22878249
Alignment:
Q  42 tatgtcagtagataaactcaaataagtcaatccaaaca 79  Q
    ||||||||| ||||| ||||||||||||||||||||||    
T  22878212 tatgtcagtggataagctcaaataagtcaatccaaaca 22878249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 79
Target Start/End: Original strand, 30331865 - 30331902
Alignment:
Q  42 tatgtcagtagataaactcaaataagtcaatccaaaca 79  Q
    ||||||||||||||| || |||||||||||||||||||    
T  30331865 tatgtcagtagataagctgaaataagtcaatccaaaca 30331902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 79
Target Start/End: Complemental strand, 40837393 - 40837356
Alignment:
Q  42 tatgtcagtagataaactcaaataagtcaatccaaaca 79  Q
    ||||||||||||||| |||||||||| |||||||||||    
T  40837393 tatgtcagtagataagctcaaataagccaatccaaaca 40837356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 48 - 83
Target Start/End: Original strand, 10727464 - 10727499
Alignment:
Q  48 agtagataaactcaaataagtcaatccaaacagacc 83  Q
    ||||||||||||||||||||||||||||||||||||    
T  10727464 agtagataaactcaaataagtcaatccaaacagacc 10727499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 42 - 80
Target Start/End: Original strand, 38602441 - 38602479
Alignment:
Q  42 tatgtcagtagataaactcaaataagtcaatccaaacag 80  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  38602441 tatgtcagtagataagctcaaataagtcaatccaaacag 38602479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 54 - 87
Target Start/End: Original strand, 18930821 - 18930854
Alignment:
Q  54 taaactcaaataagtcaatccaaacagaccattt 87  Q
    ||||||||||||||||||||||||||||||||||    
T  18930821 taaactcaaataagtcaatccaaacagaccattt 18930854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 42 - 82
Target Start/End: Complemental strand, 40728367 - 40728327
Alignment:
Q  42 tatgtcagtagataaactcaaataagtcaatccaaacagac 82  Q
    |||| ||||||||| ||||||||||||||||||||||||||    
T  40728367 tatgccagtagatagactcaaataagtcaatccaaacagac 40728327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 49 - 83
Target Start/End: Complemental strand, 1892173 - 1892139
Alignment:
Q  49 gtagataaactcaaataagtcaatccaaacagacc 83  Q
    ||||||||||||||||||||||||| |||||||||    
T  1892173 gtagataaactcaaataagtcaatctaaacagacc 1892139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 42 - 80
Target Start/End: Original strand, 7008712 - 7008750
Alignment:
Q  42 tatgtcagtagataaactcaaataagtcaatccaaacag 80  Q
    |||| |||||||||||||||||||||||||| |||||||    
T  7008712 tatgccagtagataaactcaaataagtcaattcaaacag 7008750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 42 - 80
Target Start/End: Complemental strand, 14280377 - 14280339
Alignment:
Q  42 tatgtcagtagataaactcaaataagtcaatccaaacag 80  Q
    |||| ||||||||||| ||||||||||||||||||||||    
T  14280377 tatgccagtagataaaatcaaataagtcaatccaaacag 14280339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 42 - 80
Target Start/End: Original strand, 15180653 - 15180691
Alignment:
Q  42 tatgtcagtagataaactcaaataagtcaatccaaacag 80  Q
    |||| ||||||||||||||||||||| ||||||||||||    
T  15180653 tatggcagtagataaactcaaataagccaatccaaacag 15180691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 42 - 80
Target Start/End: Complemental strand, 30251410 - 30251372
Alignment:
Q  42 tatgtcagtagataaactcaaataagtcaatccaaacag 80  Q
    ||||||||||||||| |||||||||| ||||||||||||    
T  30251410 tatgtcagtagataagctcaaataagccaatccaaacag 30251372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 49 - 83
Target Start/End: Original strand, 40357049 - 40357083
Alignment:
Q  49 gtagataaactcaaataagtcaatccaaacagacc 83  Q
    |||||||||||||||||| ||||||||||||||||    
T  40357049 gtagataaactcaaataaatcaatccaaacagacc 40357083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 79
Target Start/End: Original strand, 1096604 - 1096641
Alignment:
Q  42 tatgtcagtagataaactcaaataagtcaatccaaaca 79  Q
    ||||||| || |||||||||||||||||||||||||||    
T  1096604 tatgtcactaaataaactcaaataagtcaatccaaaca 1096641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 83
Target Start/End: Complemental strand, 1889091 - 1889050
Alignment:
Q  42 tatgtcagtagataaactcaaataagtcaatccaaacagacc 83  Q
    |||| ||||||||||||||||||||||| ||| |||||||||    
T  1889091 tatgccagtagataaactcaaataagtccatctaaacagacc 1889050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 79
Target Start/End: Complemental strand, 2487964 - 2487927
Alignment:
Q  42 tatgtcagtagataaactcaaataagtcaatccaaaca 79  Q
    ||||||||||||| |||||||||||| |||||||||||    
T  2487964 tatgtcagtagatgaactcaaataagccaatccaaaca 2487927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 79
Target Start/End: Original strand, 2606163 - 2606200
Alignment:
Q  42 tatgtcagtagataaactcaaataagtcaatccaaaca 79  Q
    ||||||||||||||| ||| ||||||||||||||||||    
T  2606163 tatgtcagtagataagctcgaataagtcaatccaaaca 2606200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 79
Target Start/End: Complemental strand, 30657733 - 30657696
Alignment:
Q  42 tatgtcagtagataaactcaaataagtcaatccaaaca 79  Q
    ||||||| |||||||||||||||||||| |||||||||    
T  30657733 tatgtcattagataaactcaaataagtcgatccaaaca 30657696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 42 - 78
Target Start/End: Original strand, 4560616 - 4560652
Alignment:
Q  42 tatgtcagtagataaactcaaataagtcaatccaaac 78  Q
    ||||||| ||||||| |||||||||||||||||||||    
T  4560616 tatgtcaatagataagctcaaataagtcaatccaaac 4560652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 48 - 80
Target Start/End: Complemental strand, 5349536 - 5349504
Alignment:
Q  48 agtagataaactcaaataagtcaatccaaacag 80  Q
    |||||||| ||||||||||||||||||||||||    
T  5349536 agtagatatactcaaataagtcaatccaaacag 5349504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 42 - 78
Target Start/End: Complemental strand, 6496847 - 6496811
Alignment:
Q  42 tatgtcagtagataaactcaaataagtcaatccaaac 78  Q
    ||||| |||||||||||||||| ||||||||||||||    
T  6496847 tatgttagtagataaactcaaacaagtcaatccaaac 6496811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 42 - 74
Target Start/End: Original strand, 6950436 - 6950468
Alignment:
Q  42 tatgtcagtagataaactcaaataagtcaatcc 74  Q
    |||| ||||||||||||||||||||||||||||    
T  6950436 tatgccagtagataaactcaaataagtcaatcc 6950468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 48 - 80
Target Start/End: Original strand, 16162880 - 16162912
Alignment:
Q  48 agtagataaactcaaataagtcaatccaaacag 80  Q
    |||||||||||||||||||| ||||||||||||    
T  16162880 agtagataaactcaaataagccaatccaaacag 16162912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 42 - 82
Target Start/End: Complemental strand, 35928686 - 35928646
Alignment:
Q  42 tatgtcagtagataaactcaaataagtcaatccaaacagac 82  Q
    ||||||||||||||| || ||||||| ||||||||||||||    
T  35928686 tatgtcagtagataagctaaaataagacaatccaaacagac 35928646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 47 - 83
Target Start/End: Original strand, 38537710 - 38537746
Alignment:
Q  47 cagtagataaactcaaataagtcaatccaaacagacc 83  Q
    |||||||||||||||||| |||||| |||||||||||    
T  38537710 cagtagataaactcaaatgagtcaacccaaacagacc 38537746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 49 - 81
Target Start/End: Complemental strand, 42893439 - 42893407
Alignment:
Q  49 gtagataaactcaaataagtcaatccaaacaga 81  Q
    |||||||||||||||||||| ||||||||||||    
T  42893439 gtagataaactcaaataagttaatccaaacaga 42893407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 42 - 85
Target Start/End: Original strand, 6292606 - 6292649
Alignment:
Q  42 tatgtcagtagataaactcaaataagtcaatccaaacagaccat 85  Q
    ||||||||||||||| |||||||||||||||||||||| |||||    
T  6292606 tatgtcagtagataagctcaaataagtcaatccaaacaaaccat 6292649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 48 - 82
Target Start/End: Complemental strand, 30014029 - 30013995
Alignment:
Q  48 agtagataaactcaaataagtcaatccaaacagac 82  Q
    |||||||||||||||||||||||||||||||||||    
T  30014029 agtagataaactcaaataagtcaatccaaacagac 30013995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 48 - 79
Target Start/End: Complemental strand, 172523 - 172492
Alignment:
Q  48 agtagataaactcaaataagtcaatccaaaca 79  Q
    ||||||||||||||||||||||||||||||||    
T  172523 agtagataaactcaaataagtcaatccaaaca 172492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 42 - 77
Target Start/End: Complemental strand, 17009538 - 17009503
Alignment:
Q  42 tatgtcagtagataaactcaaataagtcaatccaaa 77  Q
    ||||||||||||||||||||||||||||||| ||||    
T  17009538 tatgtcagtagataaactcaaataagtcaattcaaa 17009503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 50 - 85
Target Start/End: Complemental strand, 24417683 - 24417648
Alignment:
Q  50 tagataaactcaaataagtcaatccaaacagaccat 85  Q
    ||||||||||||||||||||||||||||| ||||||    
T  24417683 tagataaactcaaataagtcaatccaaaccgaccat 24417648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 48 - 79
Target Start/End: Complemental strand, 29045883 - 29045852
Alignment:
Q  48 agtagataaactcaaataagtcaatccaaaca 79  Q
    ||||||||||||||||||||||||||||||||    
T  29045883 agtagataaactcaaataagtcaatccaaaca 29045852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 42 - 77
Target Start/End: Original strand, 30257798 - 30257833
Alignment:
Q  42 tatgtcagtagataaactcaaataagtcaatccaaa 77  Q
    ||||||||||||||||||||||||||| ||||||||    
T  30257798 tatgtcagtagataaactcaaataagtaaatccaaa 30257833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 42 - 76
Target Start/End: Original strand, 2522710 - 2522744
Alignment:
Q  42 tatgtcagtagataaactcaaataagtcaatccaa 76  Q
    |||| ||||||||||||||||||||||||||||||    
T  2522710 tatgccagtagataaactcaaataagtcaatccaa 2522744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 42 - 80
Target Start/End: Original strand, 26184857 - 26184895
Alignment:
Q  42 tatgtcagtagataaactcaaataagtcaatccaaacag 80  Q
    ||||||| |||| ||||||||||||||||||||||||||    
T  26184857 tatgtcaatagaaaaactcaaataagtcaatccaaacag 26184895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 80
Target Start/End: Complemental strand, 24460356 - 24460319
Alignment:
Q  43 atgtcagtagataaactcaaataagtcaatccaaacag 80  Q
    ||||||||||||||  ||||||||||||||||||||||    
T  24460356 atgtcagtagataagttcaaataagtcaatccaaacag 24460319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 79
Target Start/End: Complemental strand, 37617413 - 37617384
Alignment:
Q  50 tagataaactcaaataagtcaatccaaaca 79  Q
    ||||||||||||||||||||||||||||||    
T  37617413 tagataaactcaaataagtcaatccaaaca 37617384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 79
Target Start/End: Original strand, 41505788 - 41505825
Alignment:
Q  42 tatgtcagtagataaactcaaataagtcaatccaaaca 79  Q
    ||||||||||||||| |||||||||| |||||||||||    
T  41505788 tatgtcagtagataagctcaaataagccaatccaaaca 41505825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 79
Target Start/End: Complemental strand, 50644211 - 50644174
Alignment:
Q  42 tatgtcagtagataaactcaaataagtcaatccaaaca 79  Q
    ||||| ||||||||| ||||||||||||||||||||||    
T  50644211 tatgttagtagataagctcaaataagtcaatccaaaca 50644174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 48 - 76
Target Start/End: Complemental strand, 5894141 - 5894113
Alignment:
Q  48 agtagataaactcaaataagtcaatccaa 76  Q
    |||||||||||||||||||||||||||||    
T  5894141 agtagataaactcaaataagtcaatccaa 5894113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 49 - 77
Target Start/End: Original strand, 23445454 - 23445482
Alignment:
Q  49 gtagataaactcaaataagtcaatccaaa 77  Q
    |||||||||||||||||||||||||||||    
T  23445454 gtagataaactcaaataagtcaatccaaa 23445482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 42 - 78
Target Start/End: Original strand, 24334309 - 24334345
Alignment:
Q  42 tatgtcagtagataaactcaaataagtcaatccaaac 78  Q
    |||||| || |||||||||||||||||||||||||||    
T  24334309 tatgtccgttgataaactcaaataagtcaatccaaac 24334345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 47 - 83
Target Start/End: Original strand, 25719790 - 25719826
Alignment:
Q  47 cagtagataaactcaaataagtcaatccaaacagacc 83  Q
    ||||| |||||||||||||| ||||||||||||||||    
T  25719790 cagtaaataaactcaaataaatcaatccaaacagacc 25719826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 42 - 82
Target Start/End: Complemental strand, 33204350 - 33204310
Alignment:
Q  42 tatgtcagtagataaactcaaataagtcaatccaaacagac 82  Q
    ||||||||||||||| |||||||||||| ||| ||||||||    
T  33204350 tatgtcagtagataagctcaaataagtcgatctaaacagac 33204310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 83
Target Start/End: Original strand, 33976293 - 33976333
Alignment:
Q  43 atgtcagtagataaactcaaataagtcaatccaaacagacc 83  Q
    |||||| || |||| ||||||||||||||||||||||||||    
T  33976293 atgtcattaaataagctcaaataagtcaatccaaacagacc 33976333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 42 - 78
Target Start/End: Complemental strand, 39976166 - 39976130
Alignment:
Q  42 tatgtcagtagataaactcaaataagtcaatccaaac 78  Q
    ||||||||||||||| ||||||||||||| |||||||    
T  39976166 tatgtcagtagataatctcaaataagtcagtccaaac 39976130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 42 - 80
Target Start/End: Complemental strand, 30536921 - 30536883
Alignment:
Q  42 tatgtcagtagataaactcaaataagtcaatccaaacag 80  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  30536921 tatgtaagtagataaactcaaataagtcaatccaaacag 30536883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 42 - 79
Target Start/End: Original strand, 4308891 - 4308928
Alignment:
Q  42 tatgtcagtagataaactcaaataagtcaatccaaaca 79  Q
    |||||||||||||||||||||||||| |||||||||||    
T  4308891 tatgtcagtagataaactcaaataagccaatccaaaca 4308928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 42 - 83
Target Start/End: Complemental strand, 7351627 - 7351586
Alignment:
Q  42 tatgtcagtagataaactcaaataagtcaatccaaacagacc 83  Q
    |||||||||||||||||||||||||||||||  |||||||||    
T  7351627 tatgtcagtagataaactcaaataagtcaatttaaacagacc 7351586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 42 - 83
Target Start/End: Complemental strand, 21405110 - 21405069
Alignment:
Q  42 tatgtcagtagataaactcaaataagtcaatccaaacagacc 83  Q
    |||||||||| |||| ||||||||||||||||||||||||||    
T  21405110 tatgtcagtatataagctcaaataagtcaatccaaacagacc 21405069  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 42 - 81
Target Start/End: Complemental strand, 9202941 - 9202902
Alignment:
Q  42 tatgtcagtagataaactcaaataagtcaatccaaacaga 81  Q
    |||| |||||||||| ||||||||||||||||||||||||    
T  9202941 tatgccagtagataagctcaaataagtcaatccaaacaga 9202902  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 42 - 80
Target Start/End: Complemental strand, 7785700 - 7785662
Alignment:
Q  42 tatgtcagtagataaactcaaataagtcaatccaaacag 80  Q
    |||||||||||||||| ||||||||| ||||||||||||    
T  7785700 tatgtcagtagataaattcaaataagacaatccaaacag 7785662  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 42 - 80
Target Start/End: Complemental strand, 34404682 - 34404644
Alignment:
Q  42 tatgtcagtagataaactcaaataagtcaatccaaacag 80  Q
    ||||||||| ||||||||||||||||| |||||||||||    
T  34404682 tatgtcagttgataaactcaaataagtaaatccaaacag 34404644  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 79
Target Start/End: Complemental strand, 1231255 - 1231218
Alignment:
Q  42 tatgtcagtagataaactcaaataagtcaatccaaaca 79  Q
    ||||||| ||||||||||||||||| ||||||||||||    
T  1231255 tatgtcaatagataaactcaaataaatcaatccaaaca 1231218  T

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Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 83
Target Start/End: Original strand, 3525238 - 3525279
Alignment:
Q  42 tatgtcagtagataaactcaaataagtcaatccaaacagacc 83  Q
    ||||||| |||||||||| |||| ||||||||||||||||||    
T  3525238 tatgtcactagataaacttaaattagtcaatccaaacagacc 3525279  T

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Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 79
Target Start/End: Complemental strand, 31594333 - 31594296
Alignment:
Q  42 tatgtcagtagataaactcaaataagtcaatccaaaca 79  Q
    ||||| ||||||||||| ||||||||||||||||||||    
T  31594333 tatgtaagtagataaacacaaataagtcaatccaaaca 31594296  T

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Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 83
Target Start/End: Original strand, 31624374 - 31624415
Alignment:
Q  42 tatgtcagtagataaactcaaataagtcaatccaaacagacc 83  Q
    |||||||||| |||| |||||||||| |||||||||||||||    
T  31624374 tatgtcagtatataagctcaaataagccaatccaaacagacc 31624415  T

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Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 46 - 79
Target Start/End: Complemental strand, 31776224 - 31776191
Alignment:
Q  46 tcagtagataaactcaaataagtcaatccaaaca 79  Q
    ||||||||||| ||||||||||||||||||||||    
T  31776224 tcagtagataagctcaaataagtcaatccaaaca 31776191  T

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Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 49 - 82
Target Start/End: Complemental strand, 31811673 - 31811640
Alignment:
Q  49 gtagataaactcaaataagtcaatccaaacagac 82  Q
    ||||||||||||||||| ||||||||||||||||    
T  31811673 gtagataaactcaaatatgtcaatccaaacagac 31811640  T

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Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 79
Target Start/End: Original strand, 33027706 - 33027743
Alignment:
Q  42 tatgtcagtagataaactcaaataagtcaatccaaaca 79  Q
    ||||||||||||||| ||||||||| ||||||||||||    
T  33027706 tatgtcagtagataagctcaaataaatcaatccaaaca 33027743  T

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Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 79
Target Start/End: Original strand, 33089620 - 33089657
Alignment:
Q  42 tatgtcagtagataaactcaaataagtcaatccaaaca 79  Q
    ||||||||||||||| |||||||||||||| |||||||    
T  33089620 tatgtcagtagataagctcaaataagtcaacccaaaca 33089657  T

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Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 83
Target Start/End: Original strand, 33737684 - 33737725
Alignment:
Q  42 tatgtcagtagataaactcaaataagtcaatccaaacagacc 83  Q
    ||||||| ||||||||||| ||||||||| ||||||||||||    
T  33737684 tatgtcaatagataaactcgaataagtcattccaaacagacc 33737725  T

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Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 49 - 81
Target Start/End: Complemental strand, 2386607 - 2386575
Alignment:
Q  49 gtagataaactcaaataagtcaatccaaacaga 81  Q
    ||||||||||| |||||||||||||||||||||    
T  2386607 gtagataaacttaaataagtcaatccaaacaga 2386575  T

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Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 51 - 83
Target Start/End: Original strand, 29270023 - 29270055
Alignment:
Q  51 agataaactcaaataagtcaatccaaacagacc 83  Q
    ||||||| |||||||||||||||||||||||||    
T  29270023 agataaagtcaaataagtcaatccaaacagacc 29270055  T

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Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 47 - 83
Target Start/End: Original strand, 31623669 - 31623705
Alignment:
Q  47 cagtagataaactcaaataagtcaatccaaacagacc 83  Q
    ||||||||||| |||||||||||||| ||||||||||    
T  31623669 cagtagataaattcaaataagtcaattcaaacagacc 31623705  T

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Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 42 - 82
Target Start/End: Complemental strand, 33068558 - 33068518
Alignment:
Q  42 tatgtcagtagataaactcaaataagtcaatccaaacagac 82  Q
    |||||||||||||||  ||||||||| ||||||||||||||    
T  33068558 tatgtcagtagataagttcaaataagccaatccaaacagac 33068518  T

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Target: scaffold1252 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold1252
Description:

Target: scaffold1252; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 42 - 82
Target Start/End: Original strand, 390 - 430
Alignment:
Q  42 tatgtcagtagataaactcaaataagtcaatccaaacagac 82  Q
    |||| ||||| |||||||||||||||| |||||||||||||    
T  390 tatggcagtatataaactcaaataagttaatccaaacagac 430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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