View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1046_low_12 (Length: 443)
Name: NF1046_low_12
Description: NF1046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1046_low_12 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 106; Significance: 7e-53; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 287 - 443
Target Start/End: Original strand, 6785923 - 6786080
Alignment:
| Q |
287 |
acagtgcacaaacattataagttacttcctgctagtgccatcaagaaaatatccacccttcatgacttcagaactgatcttg-tttcacgtagtagtgtg |
385 |
Q |
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| T |
6785923 |
acagtgcacaaacattataagttacttcctgttagtgccatcaagaaaatattcacccttcatgacttcagaactgatcttgttttcatgtggtagtgtg |
6786022 |
T |
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| Q |
386 |
ggaagcatcgaactaacaaagctttcaacatggatttcgcaactccgcccttacattt |
443 |
Q |
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| T |
6786023 |
ggaagcatagaactaagaaagctttcaacacagatttcgcacctctacccttacattt |
6786080 |
T |
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Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 166 - 251
Target Start/End: Original strand, 6785709 - 6785794
Alignment:
| Q |
166 |
tatagggagttacaatgatcaaaagttaaaacagaaaataaaggcaaatgagacagctaggcaacctaggtatgagaaagctcaaa |
251 |
Q |
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| T |
6785709 |
tatagggagatacaatgatcataagttaaaacagaaaataaaggaaaaagagacagctaggcaagctaggtataagaaagctcaaa |
6785794 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 236 - 281
Target Start/End: Original strand, 6785802 - 6785847
Alignment:
| Q |
236 |
tatgagaaagctcaaattcatgaatgcaaatgaaataactaatact |
281 |
Q |
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| T |
6785802 |
tatgagaaagctcaaattcatgaatgcaaatcaaataactaatact |
6785847 |
T |
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